Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002216

Physical Location & Seq

Genomic Coordinates Reverse (-)

6236619 .. 6237764

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGGACATGCGGAAGAGGCCCGGAGCTGACGTCACGACCGACGACGCGTCGTCCTCGTCCTCCGCGAAGAGGCGGCGAGATCAGGCCCAAGGAGGCGGTGGCATTTCGGTTGTTCCTCCGGTAGCGAACGACGTCGTCGTTGCGGACAGAGGCGACGTTTCGGTTACTCCGGCAGTGAACGACGTCGTTGCGGACAACGGCGACATTTTGGCTCCTCCTGCAGTGAACGGTGTCGTTGCGGACAGTGGAGACGTTTCGGTTCCTCCTGCAGCGAACGACGTCGTTGTGGAAAACGGCGACATTTCGGTTCCTCCGGCAATGAACGGCGTCGCTGCGGTTCCTCCGGCTGTGAAAGACGTGGTTGCGGAGAGCGGCGACGAGACGGCGAGCGAGCTCTCGAGGCTTCTGGAGACGGACTACCTGTCGCGGAACGCGGTCACTGCTCCGGCGAGATTGACGTTCTCGGAGCACCCTTCCAGGTCGCCGAAGCTGTTCCAGACGATGTCGACTTCGTACATCACGATAAACGGGAACGAGGAGAGTTGCGGCTCGTCGTTCTCGGACGCCGAGTCGTCGGTGATGGCGAGCGTGGACAGGACCGGGCGCGACGTGGAGCAGGTGAGGCTGGACTACGAGTGGTACGCGGCGGAGAGATGGGCGGAGGGGCACGGCGAGTCGGGATTCGACGACCGCGCGTGGGATGCTGCCGATCATTCGGCGCGTGAAAGAATGGTGCTCAACTTGGACTTGAATTCGGAGTGGGACGACGCCGCGCTGGCCAGGTTTGTAGGTGAAGACCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0030054 GO:0033993 GO:0042221 GO:0043207 GO:0044464 GO:0048511 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Senescence

Protein Analysis

269

Amino Acids

28.45

Weight (kDa)

4.24

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17840 AT2G17840 AT3G51250 AT3G51250 AT4G35985 AT4G35985 AT4G35985
fragaria_vesca	FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_1g11540 FvH4_2g01340 FvH4_2g01340 FvH4_2g01340
malus_domestica	MD02G1128400.v1.1 MD10G1123700.v1.1 MD15G1243600.v1.1
prunus_persica	Prupe.7G170600_v2.0.a1 Prupe.8G164100_v2.0.a1
pyrus_communis	pycom10g10590 pycom15g21450
rosa_chinensis	RchiOBHm_Chr2g0099181 RchiOBHm_Chr6g0252261
rosa_laevigata	RLG00000015400 RLG00000016853
rosa_multiflora	Rmu_co7982236.1_g000001 Rmu_sc0006252.1_g000017 Rmu_sc0006878.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143380 Rroxscaffold_7G00216200
rosa_rugosa	Rorug02G0077500 Rorug05G0506500 Rorug05G0506600
rosa_samantha	Rh2AG126400 Rh2BG129600 Rh2CG130600 Rh2DG131000 Rh6AG020300 Rh6BG015900 Rh6CG013100 Rh6DG014400
rosa_wichuraiana	Rw2G009750 Rw6G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
AatII	GACGTC	4 cut(s)	36, 138, 189, 285
Acc36I	ACCTGC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	754
AcyI	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
AfaI	GTAC	2 cut(s)	518, 644
AfiI	CCNNNNNNNGG	2 cut(s)	72, 700
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	754
AhdI	GACNNNNNGTC	4 cut(s)	49, 52, 424, 571
AjiI	CACGTC	2 cut(s)	361, 613
AjnI	CCWGG	2 cut(s)	479, 782
AluBI	AGCT	3 cut(s)	29, 397, 493
AluI	AGCT	3 cut(s)	29, 397, 493
Alw21I	GWGCWC	3 cut(s)	399, 474, 741
Alw26I	GTCTC	3 cut(s)	246, 377, 407
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	3 cut(s)	20, 87, 780
ApeKI	GCWGC	3 cut(s)	272, 335, 707
ApoI	RAATTY	1 cut(s)	754
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	4 cut(s)	609, 698, 724, 778
AspS9I	GGNCC	3 cut(s)	21, 88, 600
AsuC2I	CCSGG	2 cut(s)	24, 604
AsuHPI	GGTGA	3 cut(s)	592, 634, 806
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	672
BalI	TGGCCA	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	3 cut(s)	399, 474, 741
BbvI	GCAGC	3 cut(s)	284, 322, 694
BccI	CCATC	2 cut(s)	577, 651
BceAI	ACGGC	5 cut(s)	217, 313, 343, 402, 688
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	481, 784
BcnI	CCSGG	2 cut(s)	24, 604
BcoDI	GTCTC	3 cut(s)	246, 377, 407
BfmI	CTRYAG	2 cut(s)	222, 270
BfuAI	ACCTGC	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	779
BisI	GCNGC	8 cut(s)	77, 273, 336, 376, 550, 648, 708, 774
BlsI	GCNGC	8 cut(s)	78, 274, 337, 377, 551, 649, 709, 775
Bme1390I	CCNGG	4 cut(s)	24, 481, 604, 784
Bme18I	GGWCC	1 cut(s)	600
BmeRI	GACNNNNNGTC	4 cut(s)	49, 52, 424, 571
BmeT110I	CYCGRG	1 cut(s)	400
BmgBI	CACGTC	2 cut(s)	361, 613
BmgT120I	GGNCC	3 cut(s)	21, 88, 600
BmiI	GGNNCC	4 cut(s)	216, 264, 312, 342
BmrFI	CCNGG	4 cut(s)	24, 481, 604, 784
BmsI	GCATC	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	24, 604
BsaHI	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 700
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	481, 784
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	72, 700
BseMI	GCAATG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	207, 554
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	3 cut(s)	284, 322, 694
Bsh1285I	CGRYCG	2 cut(s)	42, 694
BshFI	GGCC	3 cut(s)	22, 89, 782
BsiEI	CGRYCG	2 cut(s)	42, 694
BsiHKAI	GWGCWC	3 cut(s)	399, 474, 741
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	7 cut(s)	24, 122, 173, 317, 347, 449, 603
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	2 cut(s)	72, 700
BsmAI	GTCTC	3 cut(s)	246, 377, 407
BsmBI	CGTCTC	3 cut(s)	246, 377, 407
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	3 cut(s)	22, 89, 782
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	4 cut(s)	399, 474, 672, 741
Bsp143I	GATC	2 cut(s)	82, 712
BspANI	GGCC	3 cut(s)	22, 89, 782
BspLI	GGNNCC	4 cut(s)	216, 264, 312, 342
BspMAI	CTGCAG	2 cut(s)	226, 274
BspMI	ACCTGC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	82, 712
BssNI	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	481, 784
Bst4CI	ACNGT	2 cut(s)	233, 248
Bst6I	CTCTTC	2 cut(s)	11, 65
BstACI	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
BstC8I	GCNNGC	4 cut(s)	391, 395, 589, 780
BstF5I	GGATG	1 cut(s)	709
BstHHI	GCGC	4 cut(s)	609, 698, 724, 778
BstKTI	GATC	2 cut(s)	85, 715
BstMAI	GTCTC	3 cut(s)	246, 377, 407
BstMBI	GATC	2 cut(s)	82, 712
BstMCI	CGRYCG	2 cut(s)	42, 694
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 221, 403, 443, 625, 704, 779
BstNI	CCWGG	2 cut(s)	481, 784
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	22, 479, 602, 782
BstSFI	CTRYAG	2 cut(s)	222, 270
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	284, 322, 694
BstV2I	GAAGAC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	22, 89, 782
BtrI	CACGTC	2 cut(s)	361, 613
BtsCI	GGATG	1 cut(s)	709
BtsI	GCAGTG	3 cut(s)	183, 231, 441
BtsIMutI	CAGTG	4 cut(s)	183, 231, 253, 441
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	391, 395, 589, 780
CfoI	GCGC	4 cut(s)	609, 698, 724, 778
Cfr13I	GGNCC	3 cut(s)	21, 88, 600
CseI	GACGC	5 cut(s)	39, 56, 319, 575, 779
Csp6I	GTAC	2 cut(s)	517, 643
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	517, 643
DpnI	GATC	2 cut(s)	84, 714
DpnII	GATC	2 cut(s)	82, 712
DriI	GACNNNNNGTC	4 cut(s)	49, 52, 424, 571
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	2 cut(s)	11, 65
Eam1105I	GACNNNNNGTC	4 cut(s)	49, 52, 424, 571
EarI	CTCTTC	2 cut(s)	11, 65
EciI	GGCGGA	2 cut(s)	665, 677
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	479, 782
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	3 cut(s)	246, 377, 407
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	8 cut(s)	77, 273, 336, 376, 550, 648, 708, 774
FokI	GGATG	1 cut(s)	716
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	8 cut(s)	77, 273, 336, 376, 550, 648, 708, 774
GlaI	GCGC	4 cut(s)	608, 697, 723, 777
GluI	GCNGC	8 cut(s)	77, 273, 336, 376, 550, 648, 708, 774
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	22, 89, 782
HapII	CCGG	7 cut(s)	24, 122, 173, 317, 347, 449, 603
HgaI	GACGC	5 cut(s)	39, 56, 319, 575, 779
HhaI	GCGC	4 cut(s)	609, 698, 724, 778
Hin1I	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	4 cut(s)	607, 696, 722, 776
HinP1I	GCGC	4 cut(s)	607, 696, 722, 776
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	3 cut(s)	572, 677, 684
HpaII	CCGG	7 cut(s)	24, 122, 173, 317, 347, 449, 603
HphI	GGTGA	3 cut(s)	592, 634, 806
Hpy166II	GTNNAC	4 cut(s)	181, 229, 510, 595
Hpy188I	TCNGA	3 cut(s)	469, 565, 760
Hpy188III	TCNNGA	6 cut(s)	37, 400, 410, 499, 523, 681
Hpy8I	GTNNAC	4 cut(s)	181, 229, 510, 595
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	233, 248
HpyCH4IV	ACGT	9 cut(s)	33, 135, 159, 186, 255, 282, 360, 461, 612
HpyCH4V	TGCA	2 cut(s)	224, 272
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 221, 403, 443, 625, 704, 779
HpySE526I	ACGT	9 cut(s)	33, 135, 159, 186, 255, 282, 360, 461, 612
Hsp92I	GRCGYC	7 cut(s)	33, 135, 186, 282, 330, 567, 771
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	4 cut(s)	607, 696, 722, 776
Kzo9I	GATC	2 cut(s)	82, 712
LmnI	GCTCC	5 cut(s)	26, 220, 451, 469, 616
Lsp1109I	GCAGC	3 cut(s)	284, 322, 694
LweI	GCATC	1 cut(s)	694
MaeII	ACGT	9 cut(s)	33, 135, 159, 186, 255, 282, 360, 461, 612
MaeIII	GTNAC	3 cut(s)	34, 166, 439
MalI	GATC	2 cut(s)	84, 714
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	2 cut(s)	82, 712
MboII	GAAGA	3 cut(s)	28, 82, 809
MfeI	CAATTG	1 cut(s)	805
MhlI	GDGCHC	4 cut(s)	399, 474, 672, 741
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	2 cut(s)	754, 805
MluI	ACGCGT	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	2 cut(s)	581, 686
Mox20I	TGGCCA	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	782
Msp20I	TGGCCA	1 cut(s)	782
MspI	CCGG	7 cut(s)	24, 122, 173, 317, 347, 449, 603
MspR9I	CCNGG	4 cut(s)	24, 481, 604, 784
MunI	CAATTG	1 cut(s)	805
MvaI	CCWGG	2 cut(s)	481, 784
MwoI	GCNNNNNNNGC	7 cut(s)	19, 221, 403, 443, 625, 704, 779
NciI	CCSGG	2 cut(s)	24, 604
NdeII	GATC	2 cut(s)	82, 712
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	4 cut(s)	216, 264, 312, 342
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	2 cut(s)	34, 439
NspI	RCATGY	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	5 cut(s)	39, 65, 138, 521, 584
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	684
PflFI	GACNNNGTC	2 cut(s)	137, 505
PkrI	GCNGC	8 cut(s)	78, 274, 337, 377, 551, 649, 709, 775
PleI	GAGTC	2 cut(s)	580, 685
PpsI	GAGTC	2 cut(s)	580, 685
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	479, 782
PspGI	CCWGG	2 cut(s)	479, 782
PspN4I	GGNNCC	4 cut(s)	216, 264, 312, 342
PspPI	GGNCC	3 cut(s)	21, 88, 600
PstI	CTGCAG	2 cut(s)	226, 274
PsyI	GACNNNGTC	2 cut(s)	137, 505
RsaI	GTAC	2 cut(s)	518, 644
RsaNI	GTAC	2 cut(s)	517, 643
SacI	GAGCTC	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	508
SatI	GCNGC	8 cut(s)	77, 273, 336, 376, 550, 648, 708, 774
Sau3AI	GATC	2 cut(s)	82, 712
Sau96I	GGNCC	3 cut(s)	21, 88, 600
SchI	GAGTC	2 cut(s)	581, 686
ScrFI	CCNGG	4 cut(s)	24, 481, 604, 784
SduI	GDGCHC	4 cut(s)	399, 474, 672, 741
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	222, 270
Sfr274I	CTCGAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	600
SlaI	CTCGAG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	754, 805
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	4 cut(s)	22, 479, 602, 782
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	233, 248
TaiI	ACGT	9 cut(s)	36, 138, 162, 189, 258, 285, 363, 464, 615
TaqI	TCGA	3 cut(s)	401, 509, 687
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	754, 805
TauI	GCSGC	5 cut(s)	79, 378, 552, 650, 776
TfiI	GAWTC	1 cut(s)	684
TscAI	CASTG	4 cut(s)	183, 231, 253, 448
TseFI	GTSAC	2 cut(s)	34, 439
TseI	GCWGC	3 cut(s)	272, 335, 707
Tsp45I	GTSAC	2 cut(s)	34, 439
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	4 cut(s)	183, 231, 253, 448
Tth111I	GACNNNGTC	2 cut(s)	137, 505
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	494
ZraI	GACGTC	4 cut(s)	34, 136, 187, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.