Rroxscaffold_7G00216200

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002216
Physical Location & Seq
Forward (+)
66887691 .. 66890359
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216200.1

Sequence Viewer

Length: 1317 bp
ATGTCTTCAAATCCCAACCCTCTCTACCCACAAGTCATCCAAACCAACCCAGAAGCCCACTCTCCTTTCACCACAAAACCCACTTCTTCTTCATCATCATCATCCTCCTCCATGTACCCTTCAGCCGACGTGACCCACCTCGCCGAGGACCTCTTCCCGGAAACCGACGCCGCTTCGGAAAATACCCAATCCTCTGAAGAGATCCTGGTCAAGATTCCGGGCGCGATCGTCCACCTGATCCAGAAGGACTACAGCATCGAATTGGCATGCGGCGAACTCACCATCGTCGGTCTCCGGCAAGGCGGCAACGTAGTCGCGGTGCTCGCGCGCGTCGGCGACGAGATTCAGTGGCCGCTGGCCAAGGACGAAGCCGCTGTGAAGCTCGACCACTCCCACTACTTCTTCAACCTACGCGTTCCGGCGAGTGGGGATAATGGTGAGATGGAGCTTCTCAACTATGGGTTGACGATTGCGACCAAGGGGCAGGACAGTTTGATGAAGGAGTTAGACCGGGTTTTGGAGATGTATAGTTGCTTTTCCGAGCAGAAGATGGAGGGTTTGGAGCACTGGGATGTTTTGGAGGGGTGTGCGGCGAGGGAGACTTCGCCGGAAGATTTAGATTCTGAAGATAAGAAGAAACTGATTGGTGACAGTTCCGCGGCGTACTGGACTACGCTGGCTCCGAATGTAGAGGATTACAGTGGGCGCTGTGCGAGGATGATTGCTTCGGGTTCGGGTCAGCTGATTAGGGGGATCTTGTGGTGTGGGGATGTGACTGTGGATAGGCTTAAGTGGGGAAATGAGTTCTTGAAGAAGAGGATGGGACCGTGTTCGAGTTCCGAGATTAGTCCAGAAAGCTTGAAGAGAGTGCAAAGGGTTAAGAGGTTGACAAAGATGACTGAGGATTTGGCCTCTGGAATCCTTTCTGGGGTTATTAAAGTATCTGGATTCTTTACGAGTGCAATTGTTAACTCGAGAGTGGGCAAGAAATTTTTTAGCCTTCTCCCTGGAGAAATTATCCTGGCTTCCTTGGATGGATTCAGCAAAGTCTGCGATGCCGTTGAAGTTGCTGGAAGGAATGTCATGTCAACCTCATCGGTTGTCACCACTGGACTTGTTTCACAGAGGTACGGAGAACCAGCAGCGAAGGTCACTAATGAAGGGCTTGATGCTGCAGGGCACGCGATAGGGACTGCTTGGGCGGTGTTCAAGATAAGAAAGGCTCTAAACCCCAAGAGTGTTATCAAGCCTACAACTCTTGCTAAAGCTGCTTCTGAAGCAAAGTCCTCCAAGTCGATGTCCACAAGTAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

438

Amino Acids

47.21

Weight (kDa)

5.78

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 240 - 424 5.2e-48 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
AclWI GGATC 3 cut(s) 196, 232, 761
AcoI YGGCCR 2 cut(s) 350, 357
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 4 cut(s) 105, 216, 645, 1296
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 116, 665, 1130
AfiI CCNNNNNNNGG 5 cut(s) 145, 157, 425, 517, 928
AflII CTTAAG 1 cut(s) 788
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 6 cut(s) 9, 406, 811, 862, 1064, 1210
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 3 cut(s) 204, 1006, 1020
AluBI AGCT 5 cut(s) 382, 448, 742, 858, 1268
AluI AGCT 5 cut(s) 382, 448, 742, 858, 1268
Alw21I GWGCWC 2 cut(s) 324, 567
Alw26I GTCTC 2 cut(s) 296, 593
AlwI GGATC 3 cut(s) 196, 232, 761
Ama87I CYCGRG 1 cut(s) 973
AoxI GGCC 3 cut(s) 350, 357, 909
ApeKI GCWGC 3 cut(s) 1142, 1172, 1268
ApoI RAATTY 1 cut(s) 989
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
Asp700I GAANNNNTTC 1 cut(s) 922
AspLEI GCGC 4 cut(s) 224, 328, 330, 708
AspS9I GGNCC 2 cut(s) 148, 824
AsuC2I CCSGG 3 cut(s) 158, 219, 512
AsuHPI GGTGA 5 cut(s) 61, 271, 449, 659, 1096
AvaI CYCGRG 1 cut(s) 973
AvaII GGWCC 2 cut(s) 148, 824
BaeGI GKGCMC 1 cut(s) 1182
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 2 cut(s) 324, 567
BbvI GCAGC 3 cut(s) 1154, 1159, 1255
BccI CCATC 5 cut(s) 290, 436, 544, 814, 1028
BceAI ACGGC 1 cut(s) 1043
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 3 cut(s) 206, 1008, 1022
BcnI CCSGG 3 cut(s) 158, 219, 512
BcoDI GTCTC 2 cut(s) 296, 593
BfmI CTRYAG 2 cut(s) 250, 1173
BfoI RGCGCY 1 cut(s) 709
BfrI CTTAAG 1 cut(s) 788
Bme1390I CCNGG 6 cut(s) 158, 206, 219, 512, 1008, 1022
Bme18I GGWCC 2 cut(s) 148, 824
BmeT110I CYCGRG 1 cut(s) 973
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 148, 824
BmiI GGNNCC 2 cut(s) 681, 825
BmrFI CCNGG 6 cut(s) 158, 206, 219, 512, 1008, 1022
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 3 cut(s) 264, 1045, 1159
BmuI ACTGGG 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 1029
BpuMI CCSGG 3 cut(s) 158, 219, 512
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 6 cut(s) 144, 360, 477, 657, 1006, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 157, 425, 517, 928
Bse1I ACTGG 3 cut(s) 572, 671, 1114
BseBI CCWGG 3 cut(s) 206, 1008, 1022
BseDI CCNNGG 6 cut(s) 144, 360, 477, 657, 1006, 1029
BseGI GGATG 7 cut(s) 36, 101, 577, 723, 775, 825, 1039
BseLI CCNNNNNNNGG 5 cut(s) 145, 157, 425, 517, 928
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 3 cut(s) 572, 671, 1114
BsePI GCGCGC 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 1182
BseXI GCAGC 3 cut(s) 1154, 1159, 1255
Bsh1236I CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 352, 359, 911
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 324, 567
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 6 cut(s) 158, 218, 295, 419, 511, 608
BslFI GGGAC 2 cut(s) 837, 1204
BslI CCNNNNNNNGG 5 cut(s) 145, 157, 425, 517, 928
BsmAI GTCTC 2 cut(s) 296, 593
BsmFI GGGAC 2 cut(s) 837, 1204
BsnI GGCC 3 cut(s) 352, 359, 911
Bso31I GGTCTC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 973
Bsp1286I GDGCHC 3 cut(s) 324, 567, 1182
Bsp143I GATC 4 cut(s) 201, 225, 237, 753
BspANI GGCC 3 cut(s) 352, 359, 911
BspCNI CTCAG 1 cut(s) 892
BspFNI CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
BspLI GGNNCC 2 cut(s) 681, 825
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 3 cut(s) 196, 232, 761
BspTI CTTAAG 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 3 cut(s) 572, 671, 1114
BssECI CCNNGG 6 cut(s) 144, 360, 477, 657, 1006, 1029
BssHII GCGCGC 1 cut(s) 326
BssMI GATC 4 cut(s) 201, 225, 237, 753
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 3 cut(s) 360, 477, 1029
Bst2UI CCWGG 3 cut(s) 206, 1008, 1022
Bst4CI ACNGT 5 cut(s) 491, 653, 701, 778, 828
Bst6I CTCTTC 4 cut(s) 158, 192, 809, 857
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 1050
BstC8I GCNNGC 6 cut(s) 268, 324, 328, 357, 678, 1182
BstDEI CTNAG 1 cut(s) 900
BstDSI CCRYGG 1 cut(s) 657
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 7 cut(s) 36, 101, 577, 723, 775, 825, 1039
BstFNI CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 4 cut(s) 224, 328, 330, 708
BstKTI GATC 4 cut(s) 204, 228, 240, 756
BstMAI GTCTC 2 cut(s) 296, 593
BstMBI GATC 4 cut(s) 201, 225, 237, 753
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 5 cut(s) 323, 1050, 1181, 1268, 1277
BstNI CCWGG 3 cut(s) 206, 1008, 1022
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 6 cut(s) 156, 204, 217, 510, 1006, 1020
BstSFI CTRYAG 2 cut(s) 250, 1173
BstSLI GKGCMC 1 cut(s) 1182
BstUI CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
BstV1I GCAGC 3 cut(s) 1154, 1159, 1255
BstX2I RGATCY 2 cut(s) 201, 753
BstYI RGATCY 2 cut(s) 201, 753
BsuRI GGCC 3 cut(s) 352, 359, 911
BtgI CCRYGG 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 1068
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 7 cut(s) 36, 101, 577, 723, 775, 825, 1039
BtsIMutI CAGTG 4 cut(s) 353, 565, 706, 1107
Cac8I GCNNGC 6 cut(s) 268, 324, 328, 357, 678, 1182
CfoI GCGC 4 cut(s) 224, 328, 330, 708
Cfr13I GGNCC 2 cut(s) 148, 824
Cfr42I CCGCGG 1 cut(s) 660
CseI GACGC 2 cut(s) 176, 319
Csp6I GTAC 3 cut(s) 115, 664, 1129
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 3 cut(s) 112, 267, 1084
CviQI GTAC 3 cut(s) 115, 664, 1129
DdeI CTNAG 1 cut(s) 900
DpnI GATC 4 cut(s) 203, 227, 239, 755
DpnII GATC 4 cut(s) 201, 225, 237, 753
EaeI YGGCCR 2 cut(s) 350, 357
Eam1104I CTCTTC 4 cut(s) 158, 192, 809, 857
EarI CTCTTC 4 cut(s) 158, 192, 809, 857
Eco130I CCWWGG 3 cut(s) 360, 477, 1029
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 148, 824
Eco57I CTGAAG 4 cut(s) 105, 216, 645, 1296
Eco88I CYCGRG 1 cut(s) 973
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 3 cut(s) 204, 1006, 1020
EcoT14I CCWWGG 3 cut(s) 360, 477, 1029
ErhI CCWWGG 3 cut(s) 360, 477, 1029
FaeI CATG 3 cut(s) 115, 270, 1087
FaiI YATR 5 cut(s) 113, 268, 459, 528, 1085
FaqI GGGAC 2 cut(s) 837, 1204
FatI CATG 3 cut(s) 111, 266, 1083
FokI GGATG 7 cut(s) 23, 88, 584, 730, 782, 832, 1046
GlaI GCGC 4 cut(s) 223, 327, 329, 707
GsuI CTGGAG 1 cut(s) 1029
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 3 cut(s) 352, 359, 911
HapII CCGG 6 cut(s) 158, 218, 295, 419, 511, 608
HgaI GACGC 2 cut(s) 176, 319
HhaI GCGC 4 cut(s) 224, 328, 330, 708
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 3 cut(s) 115, 270, 1087
Hin6I GCGC 4 cut(s) 222, 326, 328, 706
HinP1I GCGC 4 cut(s) 222, 326, 328, 706
HincII GTYRAC 4 cut(s) 465, 888, 970, 1089
HindII GTYRAC 4 cut(s) 465, 888, 970, 1089
HindIII AAGCTT 1 cut(s) 856
HinfI GANTC 6 cut(s) 214, 343, 620, 918, 948, 1038
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 6 cut(s) 158, 218, 295, 419, 511, 608
HphI GGTGA 5 cut(s) 61, 271, 449, 659, 1096
Hpy166II GTNNAC 6 cut(s) 232, 465, 888, 970, 1089, 1302
Hpy188I TCNGA 7 cut(s) 178, 196, 541, 625, 684, 841, 1276
Hpy188III TCNNGA 8 cut(s) 211, 241, 808, 851, 915, 945, 975, 1210
Hpy8I GTNNAC 6 cut(s) 232, 465, 888, 970, 1089, 1302
Hpy99I CGWCG 5 cut(s) 131, 170, 290, 335, 341
HpyAV CCTTC 7 cut(s) 129, 238, 493, 1010, 1068, 1141, 1154
HpyCH4III ACNGT 5 cut(s) 491, 653, 701, 778, 828
HpyCH4IV ACGT 2 cut(s) 129, 309
HpyCH4V TGCA 3 cut(s) 871, 962, 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 1050, 1181, 1268, 1277
HpyF3I CTNAG 1 cut(s) 900
HpySE526I ACGT 2 cut(s) 129, 309
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 3 cut(s) 115, 270, 1087
HspAI GCGC 4 cut(s) 222, 326, 328, 706
KspAI GTTAAC 1 cut(s) 970
KspI CCGCGG 1 cut(s) 660
Kzo9I GATC 4 cut(s) 201, 225, 237, 753
LmnI GCTCC 3 cut(s) 445, 562, 685
Lsp1109I GCAGC 3 cut(s) 1154, 1159, 1255
LweI GCATC 3 cut(s) 264, 1045, 1159
MaeII ACGT 2 cut(s) 129, 309
MaeIII GTNAC 5 cut(s) 130, 647, 772, 1102, 1150
MalI GATC 4 cut(s) 203, 227, 239, 755
MauBI CGCGCGCG 1 cut(s) 326
MboI GATC 4 cut(s) 201, 225, 237, 753
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 2 cut(s) 201, 753
MhlI GDGCHC 3 cut(s) 324, 567, 1182
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 4 cut(s) 260, 963, 989, 1014
MluI ACGCGT 1 cut(s) 412
MluNI TGGCCA 1 cut(s) 359
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 922
MscI TGGCCA 1 cut(s) 359
MseI TTAA 4 cut(s) 789, 879, 936, 969
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 359
MspA1I CMGCKG 4 cut(s) 355, 374, 659, 742
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 6 cut(s) 158, 218, 295, 419, 511, 608
MspR9I CCNGG 6 cut(s) 158, 206, 219, 512, 1008, 1022
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 3 cut(s) 206, 1008, 1022
MvnI CGCG 8 cut(s) 224, 317, 326, 328, 330, 414, 659, 1184
MwoI GCNNNNNNNGC 5 cut(s) 323, 1050, 1181, 1268, 1277
NciI CCSGG 3 cut(s) 158, 219, 512
NdeII GATC 4 cut(s) 201, 225, 237, 753
NlaIII CATG 3 cut(s) 115, 270, 1087
NlaIV GGNNCC 2 cut(s) 681, 825
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 5 cut(s) 130, 647, 772, 1102, 1150
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 973
PauI GCGCGC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 680
PdmI GAANNNNTTC 1 cut(s) 922
PfeI GAWTC 6 cut(s) 214, 343, 620, 918, 948, 1038
PfoI TCCNGGA 1 cut(s) 156
Ple19I CGATCG 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 204, 1006, 1020
PspGI CCWGG 3 cut(s) 204, 1006, 1020
PspN4I GGNNCC 2 cut(s) 681, 825
PspPI GGNCC 2 cut(s) 148, 824
PspPPI RGGWCCY 1 cut(s) 148
PstI CTGCAG 1 cut(s) 1177
PsuI RGATCY 2 cut(s) 201, 753
PteI GCGCGC 1 cut(s) 326
PvuI CGATCG 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 3 cut(s) 116, 665, 1130
RsaNI GTAC 3 cut(s) 115, 664, 1129
RseI CAYNNNNRTG 1 cut(s) 570
SacII CCGCGG 1 cut(s) 660
SaqAI TTAA 4 cut(s) 789, 879, 936, 969
Sau3AI GATC 4 cut(s) 201, 225, 237, 753
Sau96I GGNCC 2 cut(s) 148, 824
ScrFI CCNGG 6 cut(s) 158, 206, 219, 512, 1008, 1022
SduI GDGCHC 3 cut(s) 324, 567, 1182
SfaNI GCATC 3 cut(s) 264, 1045, 1159
SfcI CTRYAG 2 cut(s) 250, 1173
Sfr274I CTCGAG 1 cut(s) 973
Sfr303I CCGCGG 1 cut(s) 660
SgrBI CCGCGG 1 cut(s) 660
SinI GGWCC 2 cut(s) 148, 824
SlaI CTCGAG 1 cut(s) 973
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 788, 973
SmoI CTYRAG 2 cut(s) 788, 973
SphI GCATGC 1 cut(s) 270
Sse9I AATT 4 cut(s) 260, 963, 989, 1014
StyD4I CCNGG 6 cut(s) 156, 204, 217, 510, 1006, 1020
StyI CCWWGG 3 cut(s) 360, 477, 1029
TaaI ACNGT 5 cut(s) 491, 653, 701, 778, 828
TaiI ACGT 2 cut(s) 132, 312
TaqI TCGA 5 cut(s) 258, 384, 833, 974, 1295
TaqII GACCGA 1 cut(s) 278
TasI AATT 4 cut(s) 260, 963, 989, 1014
TauI GCSGC 7 cut(s) 173, 273, 306, 355, 374, 593, 662
TfiI GAWTC 6 cut(s) 214, 343, 620, 918, 948, 1038
Tru1I TTAA 4 cut(s) 789, 879, 936, 969
Tru9I TTAA 4 cut(s) 789, 879, 936, 969
TscAI CASTG 4 cut(s) 353, 572, 706, 1114
TseFI GTSAC 5 cut(s) 130, 647, 772, 1102, 1150
TseI GCWGC 3 cut(s) 1142, 1172, 1268
Tsp45I GTSAC 5 cut(s) 130, 647, 772, 1102, 1150
TspDTI ATGAA 3 cut(s) 81, 512, 1173
TspGWI ACGGA 1 cut(s) 1146
TspRI CASTG 4 cut(s) 353, 572, 706, 1114
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 148, 824
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 989
XceI RCATGY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 973
XmnI GAANNNNTTC 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.