FvH4_2g01340

Senescence-associated protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1270878 .. 1274034
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01340.t1

Sequence Viewer

Length: 1290 bp
ATGTCGAATCCCACCTCTCTCTACCCTCAAGTCATCCAGACCAACCCAGACGCCCCAAAGCCCTCTTCTTCTTCCTCCTCCTCTATGTACCCTTCAGTCGACGTGGCCCACCTCGCGGAGGACCTCTTCCCCGAAAACGACGCCGTTTCGGAAACGAACCAAAATCTCCAATCCTCGGAAGAAATCCTGGTCAAGATTCCGGGGGCGATCGTCCACCTCATCGAGAAATCCTACAGCATTGAGCTGGCCTGCGGCGACCTCACCATCGTCGCTCTCCGGCAAGGCGGCAACGTAGTCGCGGTCCTGGCGCGCGTTGGCGACGAGATCCAGTGGCCGTTGGCGAAAGACGAGGCGGCGGTGAAGCTTGATCACTCTCACTATTTCTTCAATCTTCGAGTCCCGGCGGATGGCTCGTCGGAGAATGGAGAAATAGAGCTGCTGAATTACGGGCTGACGATTGCGACCAAGGGGCAGGATGGCTTGATGAAGGAATTGGACCGGGTTTTGGAGACTTATAGTTGCTTTTCGGAGCAGAAGATGGAAGGATTGGAGCATTGGGATGTTCTGGACGGGACCGTGGCGAGGGAGACTACGCCGGAGGATTTGAGTTGTACTGACAGGAAGAAACTGATGGGCGACAGCTCGGCTGCGTACTGGACTACATTGGCTCCGAATGTGGAGGATTACAGCGGGAGGTGTGCCAGGATGATCGCTTCGGGGTCGGGGCAGCTTATTAGGGGGATTTTGTGGTGTGGGGATGTGACTGTGGACAGGCTCAAGTGGGGGAATGAGTTCTTGAAGAAGAGGATGGGGCCATGTTCCAGTTCCGAGATTAGTCCTGAGACATTGAAGAGGATCCAAAGGGTTAAGAGGTTGACGAAGATGTCGGAGAAAATGGCCTCTGGAATCCTTTCAGGGGTTATTAAAGTATCTGGATTCTTTACAAGTGCAATTGTTAACTCGAAAGTGGGCAAGAAATTTTTCAGCCTTCTCCCTGGAGAAATTGTCCTGGCTTCCTTGGATGGATTCAGCAAAGTCTGTGATGCCGTTGAAGTTGCTGGAAGGAATGTCATGTCAACCTCATCTGTTGTCACGACTGGACTTGTTTCACAGAGGTACGGCGAACCAGCAGCGAAGGTCACAAATGAAGGGCTTGATGCTGCAGGGTACGCTATTGGGACTGCTTGGGCAGTGTTCAAGATAAGAAAGGCTCTCAACCCGAAGAGTGTTATCAAGCCTACAACTCTTGCTAAAGCTGCTTCTGAAGCAAAGTCCTCCAAGTCGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

430

Amino Acids

46.3

Weight (kDa)

5.89

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 236 - 420 1.2e-47 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 883
AccI GTMKAC 1 cut(s) 99
AccII CGCG 4 cut(s) 116, 299, 310, 312
AciI CCGC 8 cut(s) 116, 252, 285, 299, 353, 356, 404, 690
AclWI GGATC 3 cut(s) 319, 850, 863
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 977
AcuI CTGAAG 2 cut(s) 78, 1284
AcyI GRCGYC 2 cut(s) 51, 141
AfaI GTAC 5 cut(s) 89, 613, 653, 1118, 1169
AfiI CCNNNNNNNGG 7 cut(s) 115, 118, 175, 407, 505, 582, 916
AgsI TTSAA 5 cut(s) 388, 799, 850, 1052, 1198
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 5 cut(s) 186, 303, 701, 994, 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 6 cut(s) 244, 364, 436, 642, 730, 1256
AluI AGCT 6 cut(s) 244, 364, 436, 642, 730, 1256
Alw26I GTCTC 3 cut(s) 503, 581, 836
AlwI GGATC 3 cut(s) 319, 850, 863
AoxI GGCC 5 cut(s) 105, 246, 332, 812, 897
ApeKI GCWGC 6 cut(s) 436, 647, 727, 1130, 1160, 1256
ApoI RAATTY 1 cut(s) 977
Asp700I GAANNNNTTC 3 cut(s) 791, 910, 980
AspLEI GCGC 2 cut(s) 310, 312
AspS9I GGNCC 6 cut(s) 106, 121, 301, 496, 573, 812
AsuC2I CCSGG 3 cut(s) 201, 401, 500
AsuHPI GGTGA 2 cut(s) 253, 370
AvaII GGWCC 4 cut(s) 121, 301, 496, 573
BamHI GGATCC 1 cut(s) 855
BbvI GCAGC 6 cut(s) 423, 634, 739, 1142, 1147, 1243
BccI CCATC 7 cut(s) 272, 401, 470, 532, 625, 802, 1016
BceAI ACGGC 4 cut(s) 128, 319, 1031, 1135
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 5 cut(s) 188, 305, 703, 996, 1010
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 3 cut(s) 201, 401, 500
BcoDI GTCTC 3 cut(s) 503, 581, 836
BfmI CTRYAG 2 cut(s) 232, 1161
BisI GCNGC 9 cut(s) 253, 286, 354, 437, 648, 728, 1131, 1161, 1257
BlsI GCNGC 9 cut(s) 254, 287, 355, 438, 649, 729, 1132, 1162, 1258
Bme1390I CCNGG 8 cut(s) 188, 201, 305, 401, 500, 703, 996, 1010
Bme18I GGWCC 4 cut(s) 121, 301, 496, 573
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 6 cut(s) 106, 121, 301, 496, 573, 812
BmiI GGNNCC 4 cut(s) 574, 669, 813, 857
BmrFI CCNGG 8 cut(s) 188, 201, 305, 401, 500, 703, 996, 1010
BmsI GCATC 2 cut(s) 1033, 1147
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 2 cut(s) 12, 761
BpuMI CCSGG 3 cut(s) 201, 401, 500
BsaHI GRCGYC 2 cut(s) 51, 141
BsaJI CCNNGG 6 cut(s) 174, 200, 465, 576, 994, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 652, 682, 990, 1020
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 118, 175, 407, 505, 582, 916
Bse1I ACTGG 4 cut(s) 328, 659, 822, 1102
BseBI CCWGG 5 cut(s) 188, 305, 703, 996, 1010
BseDI CCNNGG 6 cut(s) 174, 200, 465, 576, 994, 1017
BseGI GGATG 8 cut(s) 33, 412, 481, 565, 711, 763, 813, 1027
BseLI CCNNNNNNNGG 7 cut(s) 115, 118, 175, 407, 505, 582, 916
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 4 cut(s) 328, 659, 822, 1102
BsePI GCGCGC 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 67, 70
BseXI GCAGC 6 cut(s) 423, 634, 739, 1142, 1147, 1243
Bsh1236I CGCG 4 cut(s) 116, 299, 310, 312
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 5 cut(s) 107, 248, 334, 814, 899
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 5 cut(s) 200, 277, 401, 499, 596
BslFI GGGAC 3 cut(s) 383, 586, 1192
BslI CCNNNNNNNGG 7 cut(s) 115, 118, 175, 407, 505, 582, 916
BsmAI GTCTC 3 cut(s) 503, 581, 836
BsmFI GGGAC 3 cut(s) 383, 586, 1192
BsnI GGCC 5 cut(s) 107, 248, 334, 814, 899
Bsp143I GATC 5 cut(s) 207, 324, 367, 708, 855
BspACI CCGC 8 cut(s) 116, 252, 285, 299, 353, 356, 404, 690
BspANI GGCC 5 cut(s) 107, 248, 334, 814, 899
BspCNI CTCAG 1 cut(s) 832
BspFNI CGCG 4 cut(s) 116, 299, 310, 312
BspLI GGNNCC 4 cut(s) 574, 669, 813, 857
BspMAI CTGCAG 1 cut(s) 1165
BspPI GGATC 3 cut(s) 319, 850, 863
BsrI ACTGG 4 cut(s) 328, 659, 822, 1102
BssECI CCNNGG 6 cut(s) 174, 200, 465, 576, 994, 1017
BssHII GCGCGC 1 cut(s) 308
BssMI GATC 5 cut(s) 207, 324, 367, 708, 855
BssNI GRCGYC 2 cut(s) 51, 141
BssT1I CCWWGG 2 cut(s) 465, 1017
Bst2UI CCWGG 5 cut(s) 188, 305, 703, 996, 1010
Bst4CI ACNGT 2 cut(s) 577, 766
Bst6I CTCTTC 5 cut(s) 70, 131, 797, 845, 1217
BstACI GRCGYC 2 cut(s) 51, 141
BstC8I GCNNGC 3 cut(s) 246, 250, 310
BstDEI CTNAG 1 cut(s) 840
BstDSI CCRYGG 1 cut(s) 576
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 8 cut(s) 33, 412, 481, 565, 711, 763, 813, 1027
BstFNI CGCG 4 cut(s) 116, 299, 310, 312
BstHHI GCGC 2 cut(s) 310, 312
BstKTI GATC 5 cut(s) 210, 327, 370, 711, 858
BstMAI GTCTC 3 cut(s) 503, 581, 836
BstMBI GATC 5 cut(s) 207, 324, 367, 708, 855
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 5 cut(s) 113, 305, 1169, 1256, 1265
BstNI CCWGG 5 cut(s) 188, 305, 703, 996, 1010
BstSCI CCNGG 8 cut(s) 186, 199, 303, 399, 498, 701, 994, 1008
BstSFI CTRYAG 2 cut(s) 232, 1161
BstUI CGCG 4 cut(s) 116, 299, 310, 312
BstV1I GCAGC 6 cut(s) 423, 634, 739, 1142, 1147, 1243
BstX2I RGATCY 2 cut(s) 324, 855
BstYI RGATCY 2 cut(s) 324, 855
BsuRI GGCC 5 cut(s) 107, 248, 334, 814, 899
BtgI CCRYGG 1 cut(s) 576
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 8 cut(s) 33, 412, 481, 565, 711, 763, 813, 1027
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 2 cut(s) 335, 1197
Cac8I GCNNGC 3 cut(s) 246, 250, 310
CfoI GCGC 2 cut(s) 310, 312
Cfr13I GGNCC 6 cut(s) 106, 121, 301, 496, 573, 812
CseI GACGC 2 cut(s) 59, 149
Csp6I GTAC 5 cut(s) 88, 612, 652, 1117, 1168
CviAII CATG 2 cut(s) 816, 1072
CviQI GTAC 5 cut(s) 88, 612, 652, 1117, 1168
DdeI CTNAG 1 cut(s) 840
DpnI GATC 5 cut(s) 209, 326, 369, 710, 857
DpnII GATC 5 cut(s) 207, 324, 367, 708, 855
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 5 cut(s) 70, 131, 797, 845, 1217
EarI CTCTTC 5 cut(s) 70, 131, 797, 845, 1217
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 465, 1017
Eco47I GGWCC 4 cut(s) 121, 301, 496, 573
Eco57I CTGAAG 2 cut(s) 78, 1284
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 5 cut(s) 186, 303, 701, 994, 1008
EcoT14I CCWWGG 2 cut(s) 465, 1017
ErhI CCWWGG 2 cut(s) 465, 1017
FaeI CATG 2 cut(s) 819, 1075
FaiI YATR 4 cut(s) 86, 516, 817, 1073
FaqI GGGAC 3 cut(s) 383, 586, 1192
FatI CATG 2 cut(s) 815, 1071
FauI CCCGC 1 cut(s) 683
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 9 cut(s) 253, 286, 354, 437, 648, 728, 1131, 1161, 1257
FokI GGATG 8 cut(s) 20, 419, 488, 572, 718, 770, 820, 1034
Fsp4HI GCNGC 9 cut(s) 253, 286, 354, 437, 648, 728, 1131, 1161, 1257
GlaI GCGC 2 cut(s) 309, 311
GluI GCNGC 9 cut(s) 253, 286, 354, 437, 648, 728, 1131, 1161, 1257
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 5 cut(s) 107, 248, 334, 814, 899
HapII CCGG 5 cut(s) 200, 277, 401, 499, 596
HgaI GACGC 2 cut(s) 59, 149
HhaI GCGC 2 cut(s) 310, 312
Hin1I GRCGYC 2 cut(s) 51, 141
Hin1II CATG 2 cut(s) 819, 1075
Hin6I GCGC 2 cut(s) 308, 310
HinP1I GCGC 2 cut(s) 308, 310
HincII GTYRAC 4 cut(s) 100, 876, 958, 1077
HindII GTYRAC 4 cut(s) 100, 876, 958, 1077
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 6 cut(s) 7, 196, 396, 906, 936, 1026
HpaI GTTAAC 1 cut(s) 958
HpaII CCGG 5 cut(s) 200, 277, 401, 499, 596
HphI GGTGA 2 cut(s) 253, 370
Hpy166II GTNNAC 6 cut(s) 100, 214, 769, 876, 958, 1077
Hpy188I TCNGA 8 cut(s) 151, 178, 418, 529, 672, 829, 889, 1264
Hpy8I GTNNAC 6 cut(s) 100, 214, 769, 876, 958, 1077
Hpy99I CGWCG 5 cut(s) 104, 143, 272, 323, 418
HpyAV CCTTC 7 cut(s) 102, 481, 536, 998, 1056, 1129, 1142
HpyCH4III ACNGT 2 cut(s) 577, 766
HpyCH4IV ACGT 2 cut(s) 102, 291
HpyCH4V TGCA 2 cut(s) 950, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 305, 1169, 1256, 1265
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 2 cut(s) 102, 291
Hsp92I GRCGYC 2 cut(s) 51, 141
Hsp92II CATG 2 cut(s) 819, 1075
HspAI GCGC 2 cut(s) 308, 310
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 958
Kzo9I GATC 5 cut(s) 207, 324, 367, 708, 855
LmnI GCTCC 3 cut(s) 529, 550, 673
Lsp1109I GCAGC 6 cut(s) 423, 634, 739, 1142, 1147, 1243
LweI GCATC 2 cut(s) 1033, 1147
MaeII ACGT 2 cut(s) 102, 291
MaeIII GTNAC 3 cut(s) 760, 1090, 1138
MalI GATC 5 cut(s) 209, 326, 369, 710, 857
MboI GATC 5 cut(s) 207, 324, 367, 708, 855
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 2 cut(s) 324, 855
MluCI AATT 5 cut(s) 442, 491, 951, 977, 1002
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 2 cut(s) 396, 867
MroXI GAANNNNTTC 3 cut(s) 791, 910, 980
MseI TTAA 3 cut(s) 867, 924, 957
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 690
MspI CCGG 5 cut(s) 200, 277, 401, 499, 596
MspR9I CCNGG 8 cut(s) 188, 201, 305, 401, 500, 703, 996, 1010
MunI CAATTG 1 cut(s) 951
MvaI CCWGG 5 cut(s) 188, 305, 703, 996, 1010
MvnI CGCG 4 cut(s) 116, 299, 310, 312
MwoI GCNNNNNNNGC 5 cut(s) 113, 305, 1169, 1256, 1265
NciI CCSGG 3 cut(s) 201, 401, 500
NdeII GATC 5 cut(s) 207, 324, 367, 708, 855
NlaIII CATG 2 cut(s) 819, 1075
NlaIV GGNNCC 4 cut(s) 574, 669, 813, 857
NmeAIII GCCGAG 1 cut(s) 623
NmuCI GTSAC 3 cut(s) 760, 1090, 1138
PauI GCGCGC 1 cut(s) 308
PdmI GAANNNNTTC 3 cut(s) 791, 910, 980
PfeI GAWTC 5 cut(s) 7, 196, 906, 936, 1026
PkrI GCNGC 9 cut(s) 254, 287, 355, 438, 649, 729, 1132, 1162, 1258
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 5 cut(s) 186, 303, 701, 994, 1008
PspGI CCWGG 5 cut(s) 186, 303, 701, 994, 1008
PspN4I GGNNCC 4 cut(s) 574, 669, 813, 857
PspPI GGNCC 6 cut(s) 106, 121, 301, 496, 573, 812
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 324, 855
PteI GCGCGC 1 cut(s) 308
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 5 cut(s) 89, 613, 653, 1118, 1169
RsaNI GTAC 5 cut(s) 88, 612, 652, 1117, 1168
RseI CAYNNNNRTG 1 cut(s) 558
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 867, 924, 957
SatI GCNGC 9 cut(s) 253, 286, 354, 437, 648, 728, 1131, 1161, 1257
Sau3AI GATC 5 cut(s) 207, 324, 367, 708, 855
Sau96I GGNCC 6 cut(s) 106, 121, 301, 496, 573, 812
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 8 cut(s) 188, 201, 305, 401, 500, 703, 996, 1010
SfaNI GCATC 2 cut(s) 1033, 1147
SfcI CTRYAG 2 cut(s) 232, 1161
SinI GGWCC 4 cut(s) 121, 301, 496, 573
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 2 cut(s) 27, 776
SmoI CTYRAG 2 cut(s) 27, 776
Sse9I AATT 5 cut(s) 442, 491, 951, 977, 1002
SsiI CCGC 8 cut(s) 116, 252, 285, 299, 353, 356, 404, 690
StyD4I CCNGG 8 cut(s) 186, 199, 303, 399, 498, 701, 994, 1008
StyI CCWWGG 2 cut(s) 465, 1017
TaaI ACNGT 2 cut(s) 577, 766
TaiI ACGT 2 cut(s) 105, 294
TaqI TCGA 6 cut(s) 5, 99, 222, 394, 962, 1283
TasI AATT 5 cut(s) 442, 491, 951, 977, 1002
TatI WGTACW 1 cut(s) 611
TauI GCSGC 3 cut(s) 255, 288, 356
TfiI GAWTC 5 cut(s) 7, 196, 906, 936, 1026
Tru1I TTAA 3 cut(s) 867, 924, 957
Tru9I TTAA 3 cut(s) 867, 924, 957
TscAI CASTG 2 cut(s) 335, 1197
TseFI GTSAC 3 cut(s) 760, 1090, 1138
TseI GCWGC 6 cut(s) 436, 647, 727, 1130, 1160, 1256
Tsp45I GTSAC 3 cut(s) 760, 1090, 1138
TspDTI ATGAA 2 cut(s) 500, 1161
TspRI CASTG 2 cut(s) 335, 1197
VpaK11BI GGWCC 4 cut(s) 121, 301, 496, 573
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 977
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 3 cut(s) 791, 910, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.