Rh6CG013100

Senescence-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002216
Physical Location & Seq
Reverse (-)
1477851 .. 1481686
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG013100.1

Sequence Viewer

Length: 1128 bp
ATGTCTTCAAATCCCAACTCTCTGTACCCACAAGTCATCCAAACCAACCCAGAAGCCACCTCTCCTTTCACCACAAAACCCACTTCTTCTTCTTCATCCTCCTCCATGTACCCTTCAGCCGACGTGACCCACCTCGCCGAGGACCTCTTCCCGGAAACCGACGCCGCTTCGGAAAATACCCAATCCTCTGAAGAGATCCTGGTCAAGATTCCAGGCGCAATCGTCCACCTGATCCAGAAGGACTACAGCATCGAATTGGCATGCGGCGAACTCACCGTCGTCGGTCTCCGGCAAGGCGGCAACGTAGTCGCGGTTCTCGCGCGCGTCGGCGACGAGATTCAGTGGCCGTTGGCCAAGGACGAAGCGGCTGTCAAGCTCGACCACTCCCACTACTTCTTCAACCTCCGCGTTCCGGCGAGTGGGGATAATGGCGAGATGGAGCTGCTCAACTATGGGTTGACGATTGCGACCAAGGGGCAGGACAGCTTGATGAGGGAGTTGGACCGGGTTTTGGAGACGTATAGTTGCTTTTCCGAGCAGAAGATGGAGGGTTTGGAGCACTGGGATGTTTTGGAGGGGTGTGCGGCGAGGGAGACTTCGCCGGAGGATTTAGATTCTGAAGATAAGAAGAAACTGATCGGTGACAGTTCCGCGGCGTACTGGACTACGCTGGCTCCGAATGTAGAGGATTACAGTGGGCGCTGTGCGAGGATGATTGCTTCGGGCTCGGGTCAGCTGATTAGGGGGATCTTATGGTGTGGGGATGTGACTGTGGATAGGCTTAATTGGGGAAATGAGTTCTTGAAGAAGAGGATGGGACCGTGTTCGAGTTCCGAGATTAGTCCAGAATCCTTGAAGAGGGTGCAAAGGGTTAAGAGGTTGACGAAGATGACTGAGGATTTGGCCTCTGGAATCCTTTCTGGGGTTATTAAAGTATCTGGATTCTTTACGAGTGCAATTGTTAACTCGAGAGTGGGCAAGAAATTTTTTAGCCTTCTTCCTGGAGAAATTATCCTGGCTTCCTTGGATGGATTCAGTAAGTCTTTTTATCTAAACAACTTATATTACAAATATGCACTTTTTTGTGCTTTGTTGACATGCTTTACATATTATAAGATGGATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Senescence

Protein Analysis

375

Amino Acids

41.38

Weight (kDa)

5.04

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence PF06911 238 - 347 2e-22 Senescence domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AccII CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
AciI CCGC 9 cut(s) 165, 264, 297, 311, 365, 406, 584, 651, 653
AclWI GGATC 3 cut(s) 190, 226, 755
AcoI YGGCCR 2 cut(s) 344, 351
AcsI RAATTY 1 cut(s) 983
AcuI CTGAAG 3 cut(s) 99, 210, 639
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 3 cut(s) 26, 110, 659
AfiI CCNNNNNNNGG 7 cut(s) 139, 151, 412, 419, 511, 858, 922
AgsI TTSAA 4 cut(s) 9, 400, 805, 856
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 4 cut(s) 198, 211, 1000, 1014
AluBI AGCT 4 cut(s) 376, 442, 486, 736
AluI AGCT 4 cut(s) 376, 442, 486, 736
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 3 cut(s) 290, 509, 587
AlwI GGATC 3 cut(s) 190, 226, 755
Ama87I CYCGRG 2 cut(s) 727, 967
AoxI GGCC 3 cut(s) 344, 351, 903
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 983
ArsI GACNNNNNNTTYG 6 cut(s) 261, 293, 354, 386, 883, 915
Asp700I GAANNNNTTC 1 cut(s) 916
AspLEI GCGC 4 cut(s) 218, 322, 324, 702
AspS9I GGNCC 3 cut(s) 142, 502, 818
AsuC2I CCSGG 2 cut(s) 152, 506
AsuHPI GGTGA 3 cut(s) 61, 265, 653
AvaI CYCGRG 2 cut(s) 727, 967
AvaII GGWCC 3 cut(s) 142, 502, 818
BalI TGGCCA 1 cut(s) 353
BanII GRGCYC 1 cut(s) 728
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 429
BccI CCATC 5 cut(s) 430, 538, 808, 1022, 1111
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 4 cut(s) 200, 213, 1002, 1016
BcnI CCSGG 2 cut(s) 152, 506
BcoDI GTCTC 3 cut(s) 290, 509, 587
BfaI CTAG 1 cut(s) 1126
BfmI CTRYAG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 703
BisI GCNGC 7 cut(s) 165, 265, 298, 366, 443, 585, 654
BlsI GCNGC 7 cut(s) 166, 266, 299, 367, 444, 586, 655
Bme1390I CCNGG 6 cut(s) 152, 200, 213, 506, 1002, 1016
Bme18I GGWCC 3 cut(s) 142, 502, 818
BmeT110I CYCGRG 2 cut(s) 727, 967
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 142, 502, 818
BmiI GGNNCC 2 cut(s) 675, 819
BmrFI CCNGG 6 cut(s) 152, 200, 213, 506, 1002, 1016
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 1023
BpuMI CCSGG 2 cut(s) 152, 506
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 5 cut(s) 138, 354, 471, 651, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 7 cut(s) 139, 151, 412, 419, 511, 858, 922
Bse1I ACTGG 2 cut(s) 566, 665
BseBI CCWGG 4 cut(s) 200, 213, 1002, 1016
BseDI CCNNGG 5 cut(s) 138, 354, 471, 651, 1023
BseGI GGATG 7 cut(s) 36, 95, 571, 717, 769, 819, 1033
BseLI CCNNNNNNNGG 7 cut(s) 139, 151, 412, 419, 511, 858, 922
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 2 cut(s) 566, 665
BsePI GCGCGC 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 429
Bsh1236I CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
BshFI GGCC 3 cut(s) 346, 353, 905
BsiHKAI GWGCWC 1 cut(s) 561
BsiHKCI CYCGRG 2 cut(s) 727, 967
BsiSI CCGG 5 cut(s) 152, 289, 413, 505, 602
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 7 cut(s) 139, 151, 412, 419, 511, 858, 922
BsmAI GTCTC 3 cut(s) 290, 509, 587
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 3 cut(s) 346, 353, 905
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 2 cut(s) 727, 967
Bsp1286I GDGCHC 2 cut(s) 561, 728
Bsp143I GATC 4 cut(s) 195, 231, 636, 747
BspACI CCGC 9 cut(s) 165, 264, 297, 311, 365, 406, 584, 651, 653
BspANI GGCC 3 cut(s) 346, 353, 905
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
BspLI GGNNCC 2 cut(s) 675, 819
BspPI GGATC 3 cut(s) 190, 226, 755
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 2 cut(s) 566, 665
BssECI CCNNGG 5 cut(s) 138, 354, 471, 651, 1023
BssHII GCGCGC 1 cut(s) 320
BssMI GATC 4 cut(s) 195, 231, 636, 747
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 354, 471, 1023
Bst2UI CCWGG 4 cut(s) 200, 213, 1002, 1016
Bst4CI ACNGT 5 cut(s) 277, 647, 695, 772, 822
Bst6I CTCTTC 4 cut(s) 152, 186, 803, 851
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 262, 322, 672
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 2 cut(s) 137, 856
BstF5I GGATG 7 cut(s) 36, 95, 571, 717, 769, 819, 1033
BstFNI CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 4 cut(s) 218, 322, 324, 702
BstKTI GATC 4 cut(s) 198, 234, 639, 750
BstMAI GTCTC 3 cut(s) 290, 509, 587
BstMBI GATC 4 cut(s) 195, 231, 636, 747
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 4 cut(s) 200, 213, 1002, 1016
BstNSI RCATGY 2 cut(s) 264, 1101
BstSCI CCNGG 6 cut(s) 150, 198, 211, 504, 1000, 1014
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
BstV1I GCAGC 1 cut(s) 429
BstX2I RGATCY 2 cut(s) 195, 747
BstYI RGATCY 2 cut(s) 195, 747
BsuRI GGCC 3 cut(s) 346, 353, 905
BtgI CCRYGG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 7 cut(s) 36, 95, 571, 717, 769, 819, 1033
BtsIMutI CAGTG 3 cut(s) 347, 559, 700
Cac8I GCNNGC 3 cut(s) 262, 322, 672
CfoI GCGC 4 cut(s) 218, 322, 324, 702
Cfr13I GGNCC 3 cut(s) 142, 502, 818
Cfr42I CCGCGG 1 cut(s) 654
CseI GACGC 2 cut(s) 170, 313
Csp6I GTAC 3 cut(s) 25, 109, 658
CviAII CATG 3 cut(s) 106, 261, 1098
CviQI GTAC 3 cut(s) 25, 109, 658
DdeI CTNAG 1 cut(s) 894
DpnI GATC 4 cut(s) 197, 233, 638, 749
DpnII GATC 4 cut(s) 195, 231, 636, 747
EaeI YGGCCR 2 cut(s) 344, 351
Eam1104I CTCTTC 4 cut(s) 152, 186, 803, 851
EarI CTCTTC 4 cut(s) 152, 186, 803, 851
Eco130I CCWWGG 3 cut(s) 354, 471, 1023
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 3 cut(s) 142, 502, 818
Eco57I CTGAAG 3 cut(s) 99, 210, 639
Eco88I CYCGRG 2 cut(s) 727, 967
EcoNI CCTNNNNNAGG 2 cut(s) 137, 856
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 4 cut(s) 198, 211, 1000, 1014
EcoT14I CCWWGG 3 cut(s) 354, 471, 1023
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 3 cut(s) 354, 471, 1023
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 3 cut(s) 109, 264, 1101
FaqI GGGAC 1 cut(s) 831
FatI CATG 3 cut(s) 105, 260, 1097
Fnu4HI GCNGC 7 cut(s) 165, 265, 298, 366, 443, 585, 654
FokI GGATG 7 cut(s) 23, 82, 578, 724, 776, 826, 1040
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 7 cut(s) 165, 265, 298, 366, 443, 585, 654
FspBI CTAG 1 cut(s) 1126
GlaI GCGC 4 cut(s) 217, 321, 323, 701
GluI GCNGC 7 cut(s) 165, 265, 298, 366, 443, 585, 654
GsuI CTGGAG 1 cut(s) 1023
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 3 cut(s) 346, 353, 905
HapII CCGG 5 cut(s) 152, 289, 413, 505, 602
HgaI GACGC 2 cut(s) 170, 313
HhaI GCGC 4 cut(s) 218, 322, 324, 702
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 109, 264, 1101
Hin6I GCGC 4 cut(s) 216, 320, 322, 700
HinP1I GCGC 4 cut(s) 216, 320, 322, 700
HincII GTYRAC 4 cut(s) 459, 882, 964, 1095
HindII GTYRAC 4 cut(s) 459, 882, 964, 1095
HinfI GANTC 7 cut(s) 208, 337, 614, 848, 912, 942, 1032
HpaI GTTAAC 1 cut(s) 964
HpaII CCGG 5 cut(s) 152, 289, 413, 505, 602
HphI GGTGA 3 cut(s) 61, 265, 653
Hpy166II GTNNAC 5 cut(s) 226, 459, 882, 964, 1095
Hpy188I TCNGA 6 cut(s) 172, 190, 535, 619, 678, 835
Hpy188III TCNNGA 7 cut(s) 205, 235, 802, 845, 909, 939, 969
Hpy8I GTNNAC 5 cut(s) 226, 459, 882, 964, 1095
Hpy99I CGWCG 6 cut(s) 125, 164, 281, 284, 329, 335
HpyAV CCTTC 3 cut(s) 123, 232, 1004
HpyCH4III ACNGT 5 cut(s) 277, 647, 695, 772, 822
HpyCH4IV ACGT 3 cut(s) 123, 303, 518
HpyCH4V TGCA 3 cut(s) 865, 956, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 3 cut(s) 123, 303, 518
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 109, 264, 1101
HspAI GCGC 4 cut(s) 216, 320, 322, 700
KspAI GTTAAC 1 cut(s) 964
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 4 cut(s) 195, 231, 636, 747
LmnI GCTCC 3 cut(s) 439, 556, 679
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 1126
MaeII ACGT 3 cut(s) 123, 303, 518
MaeIII GTNAC 3 cut(s) 124, 641, 766
MalI GATC 4 cut(s) 197, 233, 638, 749
MauBI CGCGCGCG 1 cut(s) 320
MboI GATC 4 cut(s) 195, 231, 636, 747
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 2 cut(s) 195, 747
MhlI GDGCHC 2 cut(s) 561, 728
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 5 cut(s) 254, 784, 957, 983, 1008
MluNI TGGCCA 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 916
MscI TGGCCA 1 cut(s) 353
MseI TTAA 4 cut(s) 783, 873, 930, 963
MslI CAYNNNNRTG 1 cut(s) 564
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 653, 736
MspI CCGG 5 cut(s) 152, 289, 413, 505, 602
MspR9I CCNGG 6 cut(s) 152, 200, 213, 506, 1002, 1016
MunI CAATTG 1 cut(s) 957
MvaI CCWGG 4 cut(s) 200, 213, 1002, 1016
MvnI CGCG 6 cut(s) 311, 320, 322, 324, 408, 653
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 2 cut(s) 152, 506
NdeII GATC 4 cut(s) 195, 231, 636, 747
NlaIII CATG 3 cut(s) 109, 264, 1101
NlaIV GGNNCC 2 cut(s) 675, 819
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 3 cut(s) 124, 641, 766
NspI RCATGY 2 cut(s) 264, 1101
PaeI GCATGC 1 cut(s) 264
PaeR7I CTCGAG 1 cut(s) 967
PauI GCGCGC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 7 cut(s) 208, 337, 614, 848, 912, 942, 1032
PfoI TCCNGGA 2 cut(s) 150, 1000
PkrI GCNGC 7 cut(s) 166, 266, 299, 367, 444, 586, 655
PpuMI RGGWCCY 1 cut(s) 142
PsiI TTATAA 1 cut(s) 1113
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 4 cut(s) 198, 211, 1000, 1014
PspGI CCWGG 4 cut(s) 198, 211, 1000, 1014
PspN4I GGNNCC 2 cut(s) 675, 819
PspPI GGNCC 3 cut(s) 142, 502, 818
PspPPI RGGWCCY 1 cut(s) 142
PsrI GAACNNNNNNTAC 2 cut(s) 297, 329
PsuI RGATCY 2 cut(s) 195, 747
PteI GCGCGC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 3 cut(s) 26, 110, 659
RsaNI GTAC 3 cut(s) 25, 109, 658
RseI CAYNNNNRTG 1 cut(s) 564
SacII CCGCGG 1 cut(s) 654
SaqAI TTAA 4 cut(s) 783, 873, 930, 963
SatI GCNGC 7 cut(s) 165, 265, 298, 366, 443, 585, 654
Sau3AI GATC 4 cut(s) 195, 231, 636, 747
Sau96I GGNCC 3 cut(s) 142, 502, 818
ScrFI CCNGG 6 cut(s) 152, 200, 213, 506, 1002, 1016
SduI GDGCHC 2 cut(s) 561, 728
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 967
Sfr303I CCGCGG 1 cut(s) 654
SgrBI CCGCGG 1 cut(s) 654
SinI GGWCC 3 cut(s) 142, 502, 818
SlaI CTCGAG 1 cut(s) 967
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SphI GCATGC 1 cut(s) 264
Sse9I AATT 5 cut(s) 254, 784, 957, 983, 1008
SsiI CCGC 9 cut(s) 165, 264, 297, 311, 365, 406, 584, 651, 653
SspMI CTAG 1 cut(s) 1126
StyD4I CCNGG 6 cut(s) 150, 198, 211, 504, 1000, 1014
StyI CCWWGG 3 cut(s) 354, 471, 1023
TaaI ACNGT 5 cut(s) 277, 647, 695, 772, 822
TaiI ACGT 3 cut(s) 126, 306, 521
TaqI TCGA 4 cut(s) 252, 378, 827, 968
TaqII GACCGA 1 cut(s) 272
TasI AATT 5 cut(s) 254, 784, 957, 983, 1008
TauI GCSGC 6 cut(s) 167, 267, 300, 368, 587, 656
TfiI GAWTC 7 cut(s) 208, 337, 614, 848, 912, 942, 1032
Tru1I TTAA 4 cut(s) 783, 873, 930, 963
Tru9I TTAA 4 cut(s) 783, 873, 930, 963
TscAI CASTG 3 cut(s) 347, 566, 700
TseFI GTSAC 3 cut(s) 124, 641, 766
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 3 cut(s) 124, 641, 766
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 3 cut(s) 347, 566, 700
VpaK11BI GGWCC 3 cut(s) 142, 502, 818
XagI CCTNNNNNAGG 2 cut(s) 137, 856
XapI RAATTY 1 cut(s) 983
XceI RCATGY 2 cut(s) 264, 1101
XhoI CTCGAG 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.