Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Reverse (-)

9105583 .. 9107380

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGATTACACTGAACAGTGGCTTCAAAATGCCGATCATCGGCTTAGGAGTTTGGAGAATGGAGAAAGAAGAGCTTCGAGACCTTATCATCGATGCCATCAAGATCGGTTATCGTCATCTCGACTGTGCTGCTAATTATAAGAACGAAGCTGAAGTTGGTGAGGCTCTTACAGAAGCATTCACGACAGGTCTTGTCAAGAGGGAGGATCTCTTCATTACGACTAAGCTATGGAGTTCAGACCATGGCCATGTTATTGAGGCATGCAAAGACAGTCTCAAGAAACTTCAACTTGATTACCTCGACCTTTTCCTCGTTCATATACCCATAGCTACAAAACACACGGGAATAGGAACAACCGATAGTGCTTTGGGGGATGATGGGGTATTGGACATAGATACAACAATCTCTCTGGAAACTACATGGCACGACATGGAAAAGCTTGTTTCTATGGGTTTAGTCCGCAGCATTGGAATCAGTAACTATGATGTCTTTCTAACGAGAGATTGCTTGGCTTACTCCAAGATCAAACCTGCTGTGAATCAGATCGAGACACATCCTTACTTCCAACGCGATTCTCTAGTCAAATTCTGCCAGAAACATGGTATCTGTGTCACTGCTCATACTCCTCTGGGAGGTGCCACAGCCAATGCCGAATGGTTTGGCACCGTGTCATGTCTGGATGACCCAGTTCTCAAAGATGTGGCCGAGAAGTACAAACAGACAGTGGCACAGATTGTCCTGAGGTGGGGAATTCAGAGGAACACGGTGGTGATACCAAAGACATCGAAGCCTGAAAGATTGGAAGAGAATTTTCAGGTTTTCGACTTCCAACTATCGAAAGAGGACATGGAAGTGATCAAAAGCATGGAGAGGAATTACCGCACGCACCAAACAGCCAAGTTTTGGGGCATTGAGCTCTACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

309

Amino Acids

35.02

Weight (kDa)

5.61

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	16 - 222	1.5e-40	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	541
AccB1I	GGYRCC	2 cut(s)	638, 665
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccII	CGCG	1 cut(s)	573
AciI	CCGC	2 cut(s)	463, 883
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	2 cut(s)	247, 705
AcsI	RAATTY	3 cut(s)	587, 753, 811
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	4 cut(s)	41, 635, 748, 906
AgsI	TTSAA	2 cut(s)	28, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AleI	CACNNNNGTG	1 cut(s)	770
AluBI	AGCT	6 cut(s)	76, 152, 229, 332, 442, 919
AluI	AGCT	6 cut(s)	76, 152, 229, 332, 442, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	3 cut(s)	75, 281, 545
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	247, 705
ApeKI	GCWGC	2 cut(s)	131, 465
ApoI	RAATTY	3 cut(s)	587, 753, 811
Asp700I	GAANNNNTTC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	173, 784
AxyI	CCTNAGG	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	2 cut(s)	638, 665
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	2 cut(s)	118, 477
BccI	CCATC	2 cut(s)	107, 374
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	3 cut(s)	75, 281, 545
BfaI	CTAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	2 cut(s)	132, 466
BlsI	GCNGC	2 cut(s)	133, 467
BmiI	GGNNCC	2 cut(s)	640, 667
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 635, 748, 906
Bse1I	ACTGG	1 cut(s)	689
Bse21I	CCTNAGG	1 cut(s)	743
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	3 cut(s)	382, 556, 688
BseLI	CCNNNNNNNGG	4 cut(s)	41, 635, 748, 906
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	2 cut(s)	118, 477
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	2 cut(s)	249, 707
BshNI	GGYRCC	2 cut(s)	638, 665
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	921
BslI	CCNNNNNNNGG	4 cut(s)	41, 635, 748, 906
BsmAI	GTCTC	3 cut(s)	75, 281, 545
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	249, 707
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp143I	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	463, 883
BspANI	GGCC	2 cut(s)	249, 707
BspCNI	CTCAG	1 cut(s)	735
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	640, 667
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	2 cut(s)	638, 665
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	6 cut(s)	20, 128, 275, 670, 727, 769
Bst6I	CTCTTC	3 cut(s)	66, 218, 801
BstC8I	GCNNGC	2 cut(s)	265, 887
BstDEI	CTNAG	3 cut(s)	46, 225, 743
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	382, 556, 688
BstFNI	CGCG	1 cut(s)	573
BstKTI	GATC	6 cut(s)	39, 108, 211, 528, 549, 861
BstMAI	GTCTC	3 cut(s)	75, 281, 545
BstMBI	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
BstNSI	RCATGY	1 cut(s)	267
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	118, 477
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	249, 707
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	382, 556, 688
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	4 cut(s)	11, 25, 615, 732
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	265, 887
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	9 cut(s)	245, 251, 264, 423, 433, 602, 675, 850, 868
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	46, 225, 743
DpnI	GATC	6 cut(s)	38, 107, 210, 527, 548, 860
DpnII	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
EaeI	YGGCCR	2 cut(s)	247, 705
Eam1104I	CTCTTC	3 cut(s)	66, 218, 801
EarI	CTCTTC	3 cut(s)	66, 218, 801
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	743
EcoICRI	GAGCTC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	9 cut(s)	248, 254, 267, 426, 436, 605, 678, 853, 871
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	9 cut(s)	244, 250, 263, 422, 432, 601, 674, 849, 867
FbaI	TGATCA	1 cut(s)	858
Fnu4HI	GCNGC	2 cut(s)	132, 466
FokI	GGATG	3 cut(s)	389, 543, 695
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	132, 466
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	2 cut(s)	132, 466
HaeIII	GGCC	2 cut(s)	249, 707
Hin1II	CATG	9 cut(s)	248, 254, 267, 426, 436, 605, 678, 853, 871
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	474, 541, 575
HphI	GGTGA	2 cut(s)	173, 784
Hpy188I	TCNGA	3 cut(s)	241, 546, 759
HpyCH4III	ACNGT	6 cut(s)	20, 128, 275, 670, 727, 769
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	3 cut(s)	46, 225, 743
Hsp92II	CATG	9 cut(s)	248, 254, 267, 426, 436, 605, 678, 853, 871
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
LguI	GCTCTTC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	118, 477
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	479, 613
MalI	GATC	6 cut(s)	38, 107, 210, 527, 548, 860
MboI	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
MboII	GAAGA	3 cut(s)	83, 205, 818
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	921
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	5 cut(s)	136, 587, 753, 811, 877
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	592, 856
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	249
MslI	CAYNNNNRTG	3 cut(s)	249, 770, 854
Msp20I	TGGCCA	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
NlaIII	CATG	9 cut(s)	248, 254, 267, 426, 436, 605, 678, 853, 871
NlaIV	GGNNCC	2 cut(s)	640, 667
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	66
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	474, 541, 575
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	2 cut(s)	133, 467
PsiI	TTATAA	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	921
PspN4I	GGNNCC	2 cut(s)	640, 667
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	3 cut(s)	249, 770, 854
SacI	GAGCTC	1 cut(s)	921
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	132, 466
Sau3AI	GATC	6 cut(s)	36, 105, 208, 525, 546, 858
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	1 cut(s)	85
SmiMI	CAYNNNNRTG	3 cut(s)	249, 770, 854
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	5 cut(s)	136, 587, 753, 811, 877
SsiI	CCGC	2 cut(s)	463, 883
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	921
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	6 cut(s)	20, 128, 275, 670, 727, 769
TaqI	TCGA	8 cut(s)	79, 93, 123, 303, 549, 788, 825, 839
TasI	AATT	5 cut(s)	136, 587, 753, 811, 877
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	3 cut(s)	474, 541, 575
TscAI	CASTG	4 cut(s)	18, 25, 622, 732
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	131, 465
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	205, 308
TspRI	CASTG	4 cut(s)	18, 25, 622, 732
Van91I	CCANNNNNTGG	1 cut(s)	906
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	3 cut(s)	587, 753, 811
XceI	RCATGY	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.