Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Forward (+)

11664573 .. 11672635

Gene Structure 8063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G083400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCCACCATAACTCTCAACAATGGCTTCGAGATGCCCGTCATCGGTCTCGGCCTCTGGCGTCTGGAGAAAGAAGAGCTCAGAAGTGCCATCTTAAACGCAATCAAGCTCGGATATCGCCATTTTGATGCTGCTGCTCATTACAAGACTGAGATAGACGTTGGGAACGCAATTGCAGAAGCAATTCAGAGTGGGCTTGTCAAGAGGGAGGAACTTTTCATCACCTCCAAGGTTTGGAATTCAGACCATGGGCATGTGGTTGAGGCCTGCAAAAATAGCCTGAAGAAGCTTCAGTTAGATTATCTGGATCTCTACCTTGTTCACTACCCATTAGCCACCAAGCATAGCGGAGTTGGTACAACTGCTAGTCTTTTGGACGAGAATAAGGTGTTGGACATAGACGTTACAGTCTCCCTGGAAACTACATGGCACGACATGGAAAAGACCGTCTCCCTCGGCCTAGTTCGTAGCATTGGTCTCAGCAACTACGAGCTCTTTCTGACCAGAGATTGCTTATCTTACGCCAAAATCAAGCCTCAAGTGAGCCAATTTGAAACTCACCCTTATTTCCAGCGTGAATCTCTCGTCAGATTCTGTAAGAAACATGGAGTTGTACCTATGGCCCACACCCCTCTAGGAGGTGCTACGGCTAATGTCAAAGCATTTGGTTCCATTTCACCTCTGGAAGATCCAGTTCTCATTGGTCTGGCTAAAAAGTACCAAAAGAGTGTGGCCCAGATTGCTCTGAGGTGGAACATTGAGAGGGGCACACCAGTGATTCCAAAGTCCTCAAAAGTTGAGAGGTTGAAAGAGAATTTGGAAGTCCTTAACTTCAAGCTGGAGAAAGAGGACATAGAGCTGATCAATACTATAGACAAGAAATTCAGGACCACTCTACCTTCCTTATCTTGGGGAGTAGATGTTTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

311

Amino Acids

34.82

Weight (kDa)

7.73

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	234
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	315, 683
AcsI	RAATTY	3 cut(s)	238, 814, 881
AcuI	CTGAAG	2 cut(s)	275, 302
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	3 cut(s)	358, 615, 719
AfiI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
AgsI	TTSAA	3 cut(s)	554, 808, 835
AjnI	CCWGG	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 800, 832
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	6 cut(s)	79, 109, 289, 493, 838, 859
AluI	AGCT	6 cut(s)	79, 109, 289, 493, 838, 859
Alw21I	GWGCWC	2 cut(s)	81, 495
Alw26I	GTCTC	4 cut(s)	53, 415, 454, 482
AlwI	GGATC	2 cut(s)	315, 683
AlwNI	CAGNNNCTG	1 cut(s)	594
AoxI	GGCC	5 cut(s)	52, 264, 457, 621, 732
ApeKI	GCWGC	2 cut(s)	131, 134
ApoI	RAATTY	3 cut(s)	238, 814, 881
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	622, 733, 888
AsuHPI	GGTGA	3 cut(s)	214, 551, 669
AvaII	GGWCC	1 cut(s)	888
BaeGI	GKGCMC	1 cut(s)	770
BanII	GRGCYC	2 cut(s)	81, 495
Bbv12I	GWGCWC	2 cut(s)	81, 495
BbvI	GCAGC	2 cut(s)	118, 121
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	4 cut(s)	53, 415, 454, 482
BfaI	CTAG	3 cut(s)	366, 461, 635
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	888
BmgT120I	GGNCC	3 cut(s)	622, 733, 888
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	24, 118
BpmI	CTGGAG	2 cut(s)	86, 860
BpuEI	CTTGAG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	61
BsaI	GGTCTC	2 cut(s)	53, 482
BsaJI	CCNNGG	4 cut(s)	228, 247, 414, 454
BsaXI	ACNNNNNCTCC	1 cut(s)	906
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
Bse1I	ACTGG	2 cut(s)	692, 773
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	4 cut(s)	228, 247, 414, 454
BseLI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
BseMII	CTCAG	4 cut(s)	94, 141, 493, 737
BseNI	ACTGG	2 cut(s)	692, 773
BseSI	GKGCMC	1 cut(s)	770
BseXI	GCAGC	2 cut(s)	118, 121
BshFI	GGCC	5 cut(s)	54, 266, 459, 623, 734
BsiHKAI	GWGCWC	2 cut(s)	81, 495
BslI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
BsmAI	GTCTC	4 cut(s)	53, 415, 454, 482
BsmBI	CGTCTC	1 cut(s)	454
BsnI	GGCC	5 cut(s)	54, 266, 459, 623, 734
Bso31I	GGTCTC	2 cut(s)	53, 482
Bsp1286I	GDGCHC	3 cut(s)	81, 495, 770
Bsp143I	GATC	3 cut(s)	307, 688, 861
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	5 cut(s)	54, 266, 459, 623, 734
BspCNI	CTCAG	4 cut(s)	93, 142, 492, 738
BspLI	GGNNCC	1 cut(s)	670
BspPI	GGATC	2 cut(s)	315, 683
BspQI	GCTCTTC	1 cut(s)	69
BspTNI	GGTCTC	2 cut(s)	53, 482
BsrI	ACTGG	2 cut(s)	692, 773
BssECI	CCNNGG	4 cut(s)	228, 247, 414, 454
BssMI	GATC	3 cut(s)	307, 688, 861
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	228, 247
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	409, 448
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	4 cut(s)	80, 150, 479, 746
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstKTI	GATC	3 cut(s)	310, 691, 864
BstMAI	GTCTC	4 cut(s)	53, 415, 454, 482
BstMBI	GATC	3 cut(s)	307, 688, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 740
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	118, 121
BstX2I	RGATCY	2 cut(s)	307, 688
BstYI	RGATCY	2 cut(s)	307, 688
BsuRI	GGCC	5 cut(s)	54, 266, 459, 623, 734
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	622, 733, 888
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	357, 614, 718
CviAII	CATG	5 cut(s)	248, 254, 426, 436, 605
CviQI	GTAC	3 cut(s)	357, 614, 718
DdeI	CTNAG	4 cut(s)	80, 150, 479, 746
DpnI	GATC	3 cut(s)	309, 690, 863
DpnII	GATC	3 cut(s)	307, 688, 861
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	2 cut(s)	79, 493
Eco130I	CCWWGG	2 cut(s)	228, 247
Eco147I	AGGCCT	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	81, 495
Eco31I	GGTCTC	2 cut(s)	53, 482
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	888
Eco53kI	GAGCTC	2 cut(s)	79, 493
Eco57I	CTGAAG	2 cut(s)	275, 302
EcoICRI	GAGCTC	2 cut(s)	79, 493
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	228, 247
EcoT22I	ATGCAT	1 cut(s)	931
EcoT38I	GRGCYC	2 cut(s)	81, 495
ErhI	CCWWGG	2 cut(s)	228, 247
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	5 cut(s)	251, 257, 429, 439, 608
FatI	CATG	5 cut(s)	247, 253, 425, 435, 604
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	132, 135
FriOI	GRGCYC	2 cut(s)	81, 495
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	3 cut(s)	366, 461, 635
GluI	GCNGC	2 cut(s)	132, 135
GsuI	CTGGAG	2 cut(s)	86, 860
HaeIII	GGCC	5 cut(s)	54, 266, 459, 623, 734
HgaI	GACGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	5 cut(s)	251, 257, 429, 439, 608
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	578, 591, 778
HphI	GGTGA	3 cut(s)	214, 551, 669
Hpy166II	GTNNAC	2 cut(s)	6, 322
Hpy188I	TCNGA	7 cut(s)	83, 113, 189, 244, 501, 590, 747
Hpy188III	TCNNGA	6 cut(s)	31, 65, 202, 305, 683, 886
Hpy8I	GTNNAC	2 cut(s)	6, 322
HpyAV	CCTTC	1 cut(s)	909
HpyCH4III	ACNGT	2 cut(s)	409, 448
HpyCH4IV	ACGT	2 cut(s)	159, 402
HpyCH4V	TGCA	3 cut(s)	176, 270, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 740
HpyF3I	CTNAG	4 cut(s)	80, 150, 479, 746
HpySE526I	ACGT	2 cut(s)	159, 402
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	251, 257, 429, 439, 608
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	3 cut(s)	307, 688, 861
LguI	GCTCTTC	1 cut(s)	69
Lsp1109I	GCAGC	2 cut(s)	118, 121
LweI	GCATC	2 cut(s)	24, 118
MaeI	CTAG	3 cut(s)	366, 461, 635
MaeII	ACGT	2 cut(s)	159, 402
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	309, 690, 863
MboI	GATC	3 cut(s)	307, 688, 861
MboII	GAAGA	3 cut(s)	86, 295, 698
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	307, 688
MhlI	GDGCHC	3 cut(s)	81, 495, 770
MluCI	AATT	6 cut(s)	171, 183, 238, 548, 814, 881
MmeI	TCCRAC	1 cut(s)	372
Mph1103I	ATGCAT	1 cut(s)	931
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	2 cut(s)	95, 828
MslI	CAYNNNNRTG	3 cut(s)	126, 252, 773
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	276, 740
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	3 cut(s)	307, 688, 861
NlaIII	CATG	5 cut(s)	251, 257, 429, 439, 608
NlaIV	GGNNCC	1 cut(s)	670
NmeAIII	GCCGAG	2 cut(s)	30, 435
NsiI	ATGCAT	1 cut(s)	931
NspI	RCATGY	1 cut(s)	257
OliI	CACNNNNGTG	1 cut(s)	773
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	578, 591, 778
PflMI	CCANNNNNTGG	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	133, 136
Psp124BI	GAGCTC	2 cut(s)	81, 495
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	3 cut(s)	622, 733, 888
PstNI	CAGNNNCTG	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	307, 688
RsaI	GTAC	3 cut(s)	358, 615, 719
RsaNI	GTAC	3 cut(s)	357, 614, 718
RseI	CAYNNNNRTG	3 cut(s)	126, 252, 773
SacI	GAGCTC	2 cut(s)	81, 495
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	95, 828
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	3 cut(s)	307, 688, 861
Sau96I	GGNCC	3 cut(s)	622, 733, 888
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	3 cut(s)	81, 495, 770
SfaNI	GCATC	2 cut(s)	24, 118
SfcI	CTRYAG	1 cut(s)	870
SinI	GGWCC	1 cut(s)	888
SmiMI	CAYNNNNRTG	3 cut(s)	126, 252, 773
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	6 cut(s)	171, 183, 238, 548, 814, 881
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	3 cut(s)	366, 461, 635
SstI	GAGCTC	2 cut(s)	81, 495
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	228, 247
TaaI	ACNGT	2 cut(s)	409, 448
TaiI	ACGT	2 cut(s)	162, 405
TaqI	TCGA	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	171, 183, 238, 548, 814, 881
TfiI	GAWTC	3 cut(s)	578, 591, 778
Tru1I	TTAA	2 cut(s)	95, 828
Tru9I	TTAA	2 cut(s)	95, 828
TscAI	CASTG	1 cut(s)	780
TseI	GCWGC	2 cut(s)	131, 134
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	780
Van91I	CCANNNNNTGG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	888
XagI	CCTNNNNNAGG	1 cut(s)	636
XapI	RAATTY	3 cut(s)	238, 814, 881
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	3 cut(s)	366, 461, 635
Zsp2I	ATGCAT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.