Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Reverse (-)

5294269 .. 5297211

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCCACCGTTACACTCAGCAGTGGCTACGAGATGCCGGTCATCGGCCTCGGCCTCTGGCGTCTGGAGAATAACGAGCTCAAAGACGTCATCTTAAATGCTATTAAGCTTGGCTATCGCCATTTTGACTGTGCTGCTCATTACAAGAGTGAAGTAGACGCTGGGGAAGCATTTGCAGAAGCATTTAAGACTGGACTTGTCAAGAGGGAAGAACTTTTCATTAGCACCAAGATTTGGAATTCAGACCATGGGTATGTGGTTGAGGCCTGTAAAAACAGCCTCAAGAAGCTTCAGCTAGGTTATCTGGATCTCTACCTAGTTCACTACCCATTGCCCACGAGGCATAATGCCATTGGTCAAACTGCCAGTCTTCTGGGCAAGGACAAGGTGCTGGACCTAGATGTAACAATTTCCCTTCAACAAACCTGGGAGGGCATGGAAAAGACTGTCTCTTTGGGCTTAGTTCGTAGCATTGGTCTCAGCAACTACGACCTCTTTCTAACCAGAGATTGCTTGGCTTACTCCAAAATAAAGCCTGCAGTGAGCCAATTTGAAACTCACCCCTACTTCCAGCGTGACTCTCTCGTCAAATTCTGCTTGAAACACGGTGTTCTTCCCACAGCTCACACCCCTCTCGGTGGTGCTGCGGCCAACAAGGATATGTTTGGTTCAATTTCACCTTTGGATGATCCAGTTCTCAATGATGTGGCCAAGAAGTACGGAAAGAGTGTGGCACAAATCTGTCTGAGGTGGGGAATTCAAAGGAAAACAGCAGTGATTCCAAAGTCATCGAAAATTCAGAGATTGAAAGAGAATTTGGAGGTTTTTGAATTCCAGCTGAGTCATGAAGACATGGAGGTCATAAACAGTATAGACAGGAAATGTCGTGCCAGTCTACCTTCCAAGACTTGGGGCTTAGATGTGTACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

311

Amino Acids

34.76

Weight (kDa)

8.39

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	584, 857
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	2 cut(s)	234, 909
AccI	GTMKAC	2 cut(s)	156, 895
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	2 cut(s)	315, 683
AcoI	YGGCCR	2 cut(s)	648, 708
AcsI	RAATTY	6 cut(s)	238, 590, 756, 795, 814, 830
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	61, 87
AfaI	GTAC	2 cut(s)	719, 926
AfiI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
AgsI	TTSAA	7 cut(s)	419, 554, 601, 672, 761, 808, 830
AjnI	CCWGG	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	6 cut(s)	79, 109, 289, 295, 623, 838
AluI	AGCT	6 cut(s)	79, 109, 289, 295, 623, 838
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	454, 482
AlwI	GGATC	2 cut(s)	315, 683
AoxI	GGCC	5 cut(s)	46, 52, 264, 648, 708
ApeKI	GCWGC	2 cut(s)	134, 644
ApoI	RAATTY	6 cut(s)	238, 590, 756, 795, 814, 830
ArsI	GACNNNNNNTTYG	4 cut(s)	352, 384, 436, 468
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	551, 669
AvaII	GGWCC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	337
BbsI	GAAGAC	2 cut(s)	362, 855
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	121, 631
BciT130I	CCWGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	454, 482
BfaI	CTAG	3 cut(s)	296, 317, 398
BfmI	CTRYAG	1 cut(s)	537
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	135, 645, 648
BlsI	GCNGC	3 cut(s)	136, 646, 649
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	1 cut(s)	24
BpiI	GAAGAC	2 cut(s)	362, 855
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	61, 87
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	49, 247, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	196, 366, 692, 891
Bse3DI	GCAATG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	3 cut(s)	49, 247, 426
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	4 cut(s)	31, 493, 737, 830
BseNI	ACTGG	4 cut(s)	196, 366, 692, 891
BseXI	GCAGC	2 cut(s)	121, 631
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	5 cut(s)	48, 54, 266, 650, 710
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	4 cut(s)	44, 234, 638, 909
BsmAI	GTCTC	2 cut(s)	454, 482
BsnI	GGCC	5 cut(s)	48, 54, 266, 650, 710
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	307, 688
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	5 cut(s)	48, 54, 266, 650, 710
BspCNI	CTCAG	4 cut(s)	30, 492, 738, 831
BspHI	TCATGA	1 cut(s)	844
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	315, 683
BspTNI	GGTCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	196, 366, 692, 891
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	49, 247, 426
BssMI	GATC	2 cut(s)	307, 688
BssNI	GRCGYC	2 cut(s)	61, 87
BssSI	CACGAG	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	247
Bst2BI	CACGAG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	5 cut(s)	10, 131, 448, 608, 869
BstACI	GRCGYC	2 cut(s)	61, 87
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	6 cut(s)	17, 460, 479, 746, 839, 916
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	691
BstKTI	GATC	2 cut(s)	310, 691
BstMAI	GTCTC	2 cut(s)	454, 482
BstMBI	GATC	2 cut(s)	307, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 340
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	121, 631
BstV2I	GAAGAC	2 cut(s)	362, 855
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	5 cut(s)	48, 54, 266, 650, 710
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	3 cut(s)	28, 546, 780
BtsIMutI	CAGTG	3 cut(s)	28, 546, 780
Cac8I	GCNNGC	1 cut(s)	537
CciI	TCATGA	1 cut(s)	844
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	50, 167
Csp6I	GTAC	2 cut(s)	718, 925
CviAII	CATG	4 cut(s)	248, 436, 845, 853
CviQI	GTAC	2 cut(s)	718, 925
DdeI	CTNAG	6 cut(s)	17, 460, 479, 746, 839, 916
DpnI	GATC	2 cut(s)	309, 690
DpnII	GATC	2 cut(s)	307, 688
DrdI	GACNNNNNNGTC	2 cut(s)	584, 857
DseDI	GACNNNNNNGTC	2 cut(s)	584, 857
EaeI	YGGCCR	2 cut(s)	648, 708
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	79
EcoRI	GAATTC	3 cut(s)	238, 756, 830
EcoRII	CCWGG	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	251, 439, 848, 856
FatI	CATG	4 cut(s)	247, 435, 844, 852
FblI	GTMKAC	2 cut(s)	156, 895
Fnu4HI	GCNGC	3 cut(s)	135, 645, 648
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	135, 645, 648
FspBI	CTAG	3 cut(s)	296, 317, 398
GluI	GCNGC	3 cut(s)	135, 645, 648
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	48, 54, 266, 650, 710
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	2 cut(s)	50, 167
Hin1I	GRCGYC	2 cut(s)	61, 87
Hin1II	CATG	4 cut(s)	251, 439, 848, 856
HindIII	AAGCTT	2 cut(s)	107, 287
HinfI	GANTC	3 cut(s)	578, 778, 841
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	551, 669
Hpy166II	GTNNAC	5 cut(s)	6, 157, 322, 896, 925
Hpy188I	TCNGA	3 cut(s)	244, 747, 801
Hpy188III	TCNNGA	5 cut(s)	65, 202, 283, 305, 845
Hpy8I	GTNNAC	5 cut(s)	6, 157, 322, 896, 925
HpyAV	CCTTC	2 cut(s)	425, 909
HpyCH4III	ACNGT	5 cut(s)	10, 131, 448, 608, 869
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	176, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 340
HpyF3I	CTNAG	6 cut(s)	17, 460, 479, 746, 839, 916
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	61, 87
Hsp92II	CATG	4 cut(s)	251, 439, 848, 856
Kzo9I	GATC	2 cut(s)	307, 688
Lsp1109I	GCAGC	2 cut(s)	121, 631
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	296, 317, 398
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	10, 403, 575
MalI	GATC	2 cut(s)	309, 690
MboI	GATC	2 cut(s)	307, 688
MboII	GAAGA	4 cut(s)	221, 362, 605, 860
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	9 cut(s)	238, 408, 548, 590, 672, 756, 795, 814, 830
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	572, 850
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	3 cut(s)	95, 105, 186
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	838
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	167, 340
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	307, 688
NlaIII	CATG	4 cut(s)	251, 439, 848, 856
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	778
PflMI	CCANNNNNTGG	2 cut(s)	234, 909
PkrI	GCNGC	3 cut(s)	136, 646, 649
PleI	GAGTC	2 cut(s)	572, 849
PpsI	GAGTC	2 cut(s)	572, 849
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	2 cut(s)	719, 926
RsaNI	GTAC	2 cut(s)	718, 925
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	95, 105, 186
SatI	GCNGC	3 cut(s)	135, 645, 648
Sau3AI	GATC	2 cut(s)	307, 688
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	2 cut(s)	572, 850
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	9 cut(s)	238, 408, 548, 590, 672, 756, 795, 814, 830
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	3 cut(s)	296, 317, 398
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	5 cut(s)	10, 131, 448, 608, 869
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	791
TasI	AATT	9 cut(s)	238, 408, 548, 590, 672, 756, 795, 814, 830
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	3 cut(s)	95, 105, 186
Tru9I	TTAA	3 cut(s)	95, 105, 186
TscAI	CASTG	3 cut(s)	28, 546, 780
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	134, 644
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	208, 861
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	3 cut(s)	28, 546, 780
Van91I	CCANNNNNTGG	2 cut(s)	234, 909
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	6 cut(s)	238, 590, 756, 795, 814, 830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	156, 895
XspI	CTAG	3 cut(s)	296, 317, 398
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.