Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Forward (+)

3657875 .. 3661528

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGATAACACTCAACAGTGGATTCAAGATGCCAGTAGTGGGGCTGGGTGTTTGGCGCATGGAAGGAAAAGAAATCAGAGACCTCGTTTTCAATGCCCTCAACCTTGGCTATCGCCATTTCGATTGCGCTGCTGATTACAAGAATGAACCAGAAGTTGGGGAGGCACTTGCAGAAGCACTTTCGACTGGGCTTGTTAAGCGAGAGGATCTCTTCATCACCACCAAGCTTTGGAATTCAGATCATGGACATGTGGTAGAGGCCTGTAAAGATAGTCTGAAGAAACTTCGGTTGGATTATCTAGATCTGTACCTTGTTCACTTTCCTGTTGCCACCAAGCATACCGGGGTTGGTACGACTGGCAGTGCTTTGGATGAGGATGGGGTGCTAGAAATAGACACAACTGTATCTTTGGAAACTACCTGGCATGCTATGGAAGAGCTGGTCTCTATGGGTTTAGTTCGTAGCATTGGAATTAGTAACTATGATATCTTTCTAACGAGAGATTGCTTAGTTTATTCCAAAGTGAAGCCGGCCGTGAATCAGATTGAGACTCACCCATACTTCCAGCGTGAATCTCTTGTCAAATTCTGTCAGAAGCATGGCATCTGTGTCACTGCCCACACTCCTCTTGGAGGTGCTGCCGCCAACATCGAATTGTTTGGTTCAGTTTCATGTCTGGATGATCCAGTTATCAAGAATCTGGCTGAGAAATACAAAAAGACTGTCGCCCAAGTTGTTCTAAGGTGGGGCATCCAACGCAACACAGTTGTCATCCCAAAGACATCAAAACTTGAGAGAATGAAAGAGAATATCCAAGTTTTCGACTTTGAGCTTACAAAAGAGGACATGGACCTGATTGGGAAGGTAGACAGGAAACACCGGACAAATCAACCTGCCAAGTTTTGGGGCGTTGATCTGTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

310

Amino Acids

34.72

Weight (kDa)

6.22

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	904
AccB7I	CCANNNNNTGG	3 cut(s)	158, 231, 906
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	2 cut(s)	216, 680
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	235, 587
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	311, 355
AfiI	CCNNNNNNNGG	5 cut(s)	41, 158, 231, 635, 906
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	28, 94
AjnI	CCWGG	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 275, 307
AluBI	AGCT	3 cut(s)	229, 442, 835
AluI	AGCT	3 cut(s)	229, 442, 835
Alw26I	GTCTC	3 cut(s)	75, 451, 545
AlwI	GGATC	2 cut(s)	216, 680
AoxI	GGCC	2 cut(s)	261, 534
ApeKI	GCWGC	2 cut(s)	131, 641
ApoI	RAATTY	2 cut(s)	235, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AspLEI	GCGC	2 cut(s)	60, 131
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	211, 548
AvaII	GGWCC	1 cut(s)	853
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BbvI	GCAGC	2 cut(s)	118, 628
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	521
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	75, 451, 545
BfaI	CTAG	2 cut(s)	302, 389
BfuAI	ACCTGC	1 cut(s)	904
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	3 cut(s)	132, 642, 645
BlsI	GCNGC	3 cut(s)	133, 643, 646
Bme1390I	CCNGG	2 cut(s)	346, 424
Bme18I	GGWCC	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	853
BmrFI	CCNGG	2 cut(s)	346, 424
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	21, 615, 762
BmuI	ACTGGG	1 cut(s)	198
BplI	GAGNNNNNCTC	4 cut(s)	195, 227, 431, 463
BpuEI	CTTGAG	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	2 cut(s)	75, 451
BsaJI	CCNNGG	2 cut(s)	106, 345
BsaWI	WCCGGW	1 cut(s)	882
Bsc4I	CCNNNNNNNGG	5 cut(s)	41, 158, 231, 635, 906
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	4 cut(s)	35, 193, 364, 689
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	106, 345
BseGI	GGATG	5 cut(s)	379, 385, 688, 753, 774
BseLI	CCNNNNNNNGG	5 cut(s)	41, 158, 231, 635, 906
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	4 cut(s)	35, 193, 364, 689
BseRI	GAGGAG	1 cut(s)	618
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	118, 628
BseYI	CCCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	263, 536
BsiEI	CGRYCG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	345, 533, 883
BslI	CCNNNNNNNGG	5 cut(s)	41, 158, 231, 635, 906
BsmAI	GTCTC	3 cut(s)	75, 451, 545
BsnI	GGCC	2 cut(s)	263, 536
Bso31I	GGTCTC	2 cut(s)	75, 451
Bsp143I	GATC	5 cut(s)	208, 241, 304, 685, 916
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	2 cut(s)	263, 536
BspCNI	CTCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	2 cut(s)	216, 680
BspQI	GCTCTTC	1 cut(s)	432
BspTNI	GGTCTC	2 cut(s)	75, 451
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	4 cut(s)	35, 193, 364, 689
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	106, 345
BssMI	GATC	5 cut(s)	208, 241, 304, 685, 916
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	4 cut(s)	20, 406, 727, 769
Bst6I	CTCTTC	2 cut(s)	218, 432
BstC8I	GCNNGC	2 cut(s)	429, 534
BstDEI	CTNAG	3 cut(s)	511, 708, 743
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	5 cut(s)	379, 385, 688, 753, 774
BstHHI	GCGC	2 cut(s)	60, 131
BstKTI	GATC	5 cut(s)	211, 244, 307, 688, 919
BstMAI	GTCTC	3 cut(s)	75, 451, 545
BstMBI	GATC	5 cut(s)	208, 241, 304, 685, 916
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 759
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	2 cut(s)	254, 431
BstSCI	CCNGG	2 cut(s)	344, 422
BstV1I	GCAGC	2 cut(s)	118, 628
BstX2I	RGATCY	2 cut(s)	208, 304
BstYI	RGATCY	2 cut(s)	208, 304
BstZI	CGGCCG	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	263, 536
BtsCI	GGATG	5 cut(s)	379, 385, 688, 753, 774
BtsI	GCAGTG	2 cut(s)	370, 615
BtsIMutI	CAGTG	3 cut(s)	25, 370, 615
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	429, 534
CfoI	GCGC	2 cut(s)	60, 131
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	2 cut(s)	310, 354
CviAII	CATG	7 cut(s)	61, 245, 251, 428, 602, 675, 850
CviQI	GTAC	2 cut(s)	310, 354
DdeI	CTNAG	3 cut(s)	511, 708, 743
DpnI	GATC	5 cut(s)	210, 243, 306, 687, 918
DpnII	GATC	5 cut(s)	208, 241, 304, 685, 916
EaeI	YGGCCR	1 cut(s)	534
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	218, 432
EarI	CTCTTC	2 cut(s)	218, 432
EclXI	CGGCCG	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	263
Eco31I	GGTCTC	2 cut(s)	75, 451
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	853
Eco52I	CGGCCG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	299
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	7 cut(s)	64, 248, 254, 431, 605, 678, 853
FatI	CATG	7 cut(s)	60, 244, 250, 427, 601, 674, 849
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	3 cut(s)	132, 642, 645
FokI	GGATG	5 cut(s)	386, 392, 695, 740, 761
Fsp4HI	GCNGC	3 cut(s)	132, 642, 645
FspBI	CTAG	2 cut(s)	302, 389
GlaI	GCGC	2 cut(s)	59, 130
GluI	GCNGC	3 cut(s)	132, 642, 645
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	263, 536
HapII	CCGG	3 cut(s)	345, 533, 883
HhaI	GCGC	2 cut(s)	60, 131
Hin1II	CATG	7 cut(s)	64, 248, 254, 431, 605, 678, 853
Hin6I	GCGC	2 cut(s)	58, 129
HinP1I	GCGC	2 cut(s)	58, 129
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	5 cut(s)	24, 541, 553, 575, 700
HpaII	CCGG	3 cut(s)	345, 533, 883
HphI	GGTGA	2 cut(s)	211, 548
Hpy166II	GTNNAC	2 cut(s)	319, 871
Hpy188I	TCNGA	5 cut(s)	80, 241, 279, 546, 597
Hpy188III	TCNNGA	4 cut(s)	28, 302, 680, 697
Hpy8I	GTNNAC	2 cut(s)	319, 871
HpyAV	CCTTC	2 cut(s)	59, 859
HpyCH4III	ACNGT	4 cut(s)	20, 406, 727, 769
HpyCH4V	TGCA	2 cut(s)	173, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 759
HpyF3I	CTNAG	3 cut(s)	511, 708, 743
Hsp92II	CATG	7 cut(s)	64, 248, 254, 431, 605, 678, 853
HspAI	GCGC	2 cut(s)	58, 129
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
Kzo9I	GATC	5 cut(s)	208, 241, 304, 685, 916
LguI	GCTCTTC	1 cut(s)	432
Lsp1109I	GCAGC	2 cut(s)	118, 628
LweI	GCATC	3 cut(s)	21, 615, 762
MaeI	CTAG	2 cut(s)	302, 389
MaeIII	GTNAC	2 cut(s)	479, 613
MalI	GATC	5 cut(s)	210, 243, 306, 687, 918
MboI	GATC	5 cut(s)	208, 241, 304, 685, 916
MboII	GAAGA	3 cut(s)	205, 292, 449
MflI	RGATCY	2 cut(s)	208, 304
MluCI	AATT	4 cut(s)	235, 474, 587, 656
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	2 cut(s)	273, 781
MnlI	CCTC	9 cut(s)	95, 110, 157, 199, 253, 370, 629, 639, 838
Mph1103I	ATGCAT	1 cut(s)	928
MroNI	GCCGGC	1 cut(s)	532
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	3 cut(s)	345, 533, 883
MspR9I	CCNGG	2 cut(s)	346, 424
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	199, 759
NaeI	GCCGGC	1 cut(s)	534
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	5 cut(s)	208, 241, 304, 685, 916
NgoMIV	GCCGGC	1 cut(s)	532
NlaIII	CATG	7 cut(s)	64, 248, 254, 431, 605, 678, 853
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	2 cut(s)	254, 431
PaeI	GCATGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	24, 541, 575, 700
PflMI	CCANNNNNTGG	3 cut(s)	158, 231, 906
PkrI	GCNGC	3 cut(s)	133, 643, 646
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	853
PsuI	RGATCY	2 cut(s)	208, 304
RsaI	GTAC	2 cut(s)	311, 355
RsaNI	GTAC	2 cut(s)	310, 354
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	132, 642, 645
Sau3AI	GATC	5 cut(s)	208, 241, 304, 685, 916
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	346, 424
SfaNI	GCATC	3 cut(s)	21, 615, 762
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	4 cut(s)	235, 474, 587, 656
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	2 cut(s)	302, 389
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	344, 422
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	4 cut(s)	20, 406, 727, 769
TaqI	TCGA	4 cut(s)	123, 185, 654, 825
TasI	AATT	4 cut(s)	235, 474, 587, 656
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	4 cut(s)	24, 541, 575, 700
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	25, 370, 622
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	2 cut(s)	131, 641
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	162, 205, 663, 818
TspRI	CASTG	3 cut(s)	25, 370, 622
Van91I	CCANNNNNTGG	3 cut(s)	158, 231, 906
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	235, 587
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	2 cut(s)	254, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	2 cut(s)	302, 389
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.