Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Forward (+)

20833839 .. 20837102

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCCTCAACCTTGGCTATCGCCATTTCGATTGCGCTGTACAATAATGAACGAGAAGTTGGGGAGGCACTTGCAGAAGCATTTTCGACTGGGCTTGTTAAGCGAGAGGATCTCTTCATCACCACCAAGCTTTGGAATTCGGATCATGGACACGTTGTAGAGGCCTGTAAAGACAGTCTGAAGAAGCTTCGGTTGGATTATCTGGATCTGTACCTTGTTCACTTTCCTGTTGCCACCAAGCATACCGGAGTTGGTAGGACTGGCAGTGCTTTGGATGAGGATGGGGTGCTAGAAATAGACACAACCATATCTTTGGATACTACCTGGCATGCTATGGAAGAGCTGGTCTCTATGGGTTTAGTTCGTAGCATTGGAAATAGTAGCTATGATATCTTTCTGACGAGAGATTGCTTAGCTTATTCCAAAGTGAAGCCCGCCGTAAATCAGACTGAGACTCACCCATACTTCCAACGTGAATCTCTTGTCAAATTCTGTCAGAAGCATGGCATCTGTGTCACTGCCCACACTCCTCTTGGAGGTGCTGTGGCCAACAGCGAGTGGTTTGGTTCAGTTTCATGTCTAGACGATCCAGTTCTTAAGAATCTGGCTGAGAAATACAAAAAGACTGCTGCCCAAGTTGTTCTAAGGTGGGGCATCGAACGGAACACAGTTGTCATCCCAAAGACGTCAAAACTTGAGAGATTGAAAGAAAATTTCCCAGTTTTGACTTTGAGCTCACCAAAGAGGACATGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

253

Amino Acids

28.07

Weight (kDa)

6.71

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	689
AccB7I	CCANNNNNTGG	1 cut(s)	132
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	4 cut(s)	117, 150, 213, 581
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	3 cut(s)	136, 488, 712
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	2 cut(s)	41, 212
AfiI	CCNNNNNNNGG	2 cut(s)	132, 536
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	4 cut(s)	42, 74, 176, 208
AluBI	AGCT	6 cut(s)	130, 187, 343, 384, 416, 735
AluI	AGCT	6 cut(s)	130, 187, 343, 384, 416, 735
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	2 cut(s)	352, 446
AlwI	GGATC	4 cut(s)	117, 150, 213, 581
AoxI	GGCC	2 cut(s)	162, 546
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	3 cut(s)	136, 488, 712
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	3 cut(s)	112, 449, 729
AvaII	GGWCC	1 cut(s)	753
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	352, 446
BfaI	CTAG	2 cut(s)	290, 581
BfrI	CTTAAG	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	630
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	2 cut(s)	99, 713
BmsI	GCATC	2 cut(s)	516, 663
BmuI	ACTGGG	2 cut(s)	99, 713
BplI	GAGNNNNNCTC	4 cut(s)	96, 128, 332, 364
Bpu1102I	GCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	686
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 536
Bse1I	ACTGG	4 cut(s)	94, 265, 590, 719
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	280, 286, 675
BseLI	CCNNNNNNNGG	2 cut(s)	132, 536
BseMII	CTCAG	2 cut(s)	441, 600
BseNI	ACTGG	4 cut(s)	94, 265, 590, 719
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	616
BshFI	GGCC	2 cut(s)	164, 548
BsiHKAI	GWGCWC	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	132, 536
BsmAI	GTCTC	2 cut(s)	352, 446
BsnI	GGCC	2 cut(s)	164, 548
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	109, 142, 205, 586
Bsp1720I	GCTNAGC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	164, 548
BspCNI	CTCAG	2 cut(s)	442, 601
BspPI	GGATC	4 cut(s)	117, 150, 213, 581
BspQI	GCTCTTC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	4 cut(s)	94, 265, 590, 719
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	109, 142, 205, 586
BssNI	GRCGYC	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	176, 670
Bst6I	CTCTTC	2 cut(s)	119, 333
BstACI	GRCGYC	1 cut(s)	686
BstAFI	CTTAAG	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	330, 435
BstDEI	CTNAG	4 cut(s)	412, 450, 609, 644
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	3 cut(s)	280, 286, 675
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	112, 145, 208, 589
BstMAI	GTCTC	2 cut(s)	352, 446
BstMBI	GATC	4 cut(s)	109, 142, 205, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	616
BstX2I	RGATCY	2 cut(s)	109, 205
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	109, 205
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	164, 548
BtsCI	GGATG	3 cut(s)	280, 286, 675
BtsI	GCAGTG	2 cut(s)	271, 516
BtsIMutI	CAGTG	2 cut(s)	271, 516
Cac8I	GCNNGC	2 cut(s)	330, 435
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	40, 211
CviAII	CATG	5 cut(s)	146, 329, 503, 576, 750
CviQI	GTAC	2 cut(s)	40, 211
DdeI	CTNAG	4 cut(s)	412, 450, 609, 644
DpnI	GATC	4 cut(s)	111, 144, 207, 588
DpnII	GATC	4 cut(s)	109, 142, 205, 586
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	119, 333
EarI	CTCTTC	2 cut(s)	119, 333
Ecl136II	GAGCTC	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	737
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	753
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	735
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	5 cut(s)	149, 332, 506, 579, 753
FatI	CATG	5 cut(s)	145, 328, 502, 575, 749
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	3 cut(s)	287, 293, 662
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	2 cut(s)	290, 581
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	164, 548
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	5 cut(s)	149, 332, 506, 579, 753
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	2 cut(s)	128, 185
HinfI	GANTC	3 cut(s)	454, 476, 601
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	3 cut(s)	112, 449, 729
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	142, 180, 399, 447, 498
Hpy188III	TCNNGA	2 cut(s)	203, 581
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	176, 670
HpyCH4IV	ACGT	3 cut(s)	153, 472, 686
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	4 cut(s)	412, 450, 609, 644
HpySE526I	ACGT	3 cut(s)	153, 472, 686
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	5 cut(s)	149, 332, 506, 579, 753
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	4 cut(s)	109, 142, 205, 586
LguI	GCTCTTC	1 cut(s)	333
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	516, 663
MaeI	CTAG	2 cut(s)	290, 581
MaeII	ACGT	3 cut(s)	153, 472, 686
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	4 cut(s)	111, 144, 207, 588
MboI	GATC	4 cut(s)	109, 142, 205, 586
MboII	GAAGA	3 cut(s)	106, 193, 350
MflI	RGATCY	2 cut(s)	109, 205
MhlI	GDGCHC	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	3 cut(s)	136, 488, 712
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	2 cut(s)	174, 493
MnlI	CCTC	8 cut(s)	16, 58, 100, 154, 271, 530, 540, 738
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	99, 597
Msp20I	TGGCCA	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	4 cut(s)	109, 142, 205, 586
NlaIII	CATG	5 cut(s)	149, 332, 506, 579, 753
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	476, 601
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	753
PsuI	RGATCY	2 cut(s)	109, 205
RsaI	GTAC	2 cut(s)	41, 212
RsaNI	GTAC	2 cut(s)	40, 211
SacI	GAGCTC	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	99, 597
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	4 cut(s)	109, 142, 205, 586
Sau96I	GGNCC	1 cut(s)	753
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	2 cut(s)	516, 663
SinI	GGWCC	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	596, 695
SmoI	CTYRAG	2 cut(s)	596, 695
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	136, 488, 712
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	2 cut(s)	290, 581
SstI	GAGCTC	1 cut(s)	737
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	176, 670
TaiI	ACGT	3 cut(s)	156, 475, 689
TaqI	TCGA	3 cut(s)	29, 86, 657
TasI	AATT	3 cut(s)	136, 488, 712
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	476, 601
Tru1I	TTAA	2 cut(s)	99, 597
Tru9I	TTAA	2 cut(s)	99, 597
TscAI	CASTG	2 cut(s)	271, 523
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	63, 106, 564
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	2 cut(s)	271, 523
Van91I	CCANNNNNTGG	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	753
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	3 cut(s)	136, 488, 712
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	2 cut(s)	530, 747
XspI	CTAG	2 cut(s)	290, 581
ZraI	GACGTC	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.