Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Reverse (-)

47184197 .. 47185937

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAATTAGTCTGAATAGTGGGTTCGAGATGCCACTAATGGGTCTGGGTCTTTGGCGCATGGAAAAAGATCAGATCAGACCTCTCATCATCACTGCCATAAAACTTGGCTATCGCCATTTTGACTGCGCTGCCCATTACAAGAATGAAGTAGAAGTTGGGAACGCGCTTGCAGAAGCATTTCGGTCTGGACTTGTCAAGAGGGAGGATGTGTTCATTACCTCTAAGGCCAGTCTAGTTGGAAACTTCAACCATGGACATGTTGTTGAGGCCTGCAGAGACAGCCTGAAGAAGCTTCAGTTAGAGTATCTAGATCTCTACTTGATTCACTTTCCTATAGCCTCTACTCATACTGGAGTTGGTACTACTGGTAGTGTTTTGGATGAGGATAGGATGCTGGACATGGACACCACGATATCCCTGGAAAGTACCTGGCATGATATGGAAAAGCTTGCGTCTCTGGGATTAGTTCGAAGCATTGGAATCAGCGCGAATCTCTCATCAAATTCTGTAGGAAGCACGGAATATGCGCTACAGCTCATACCCCCCCTAGGAGGCTCTGTGGCCAACACTAAGGACTTTGGTTCAATTTCTTGTTTGGATGATCCAGTCCTTAAGGGTTTGGCTAAGAAGTATGAAAAGAGTGCAGCACAGATTGTTCTCAGGTGGGGAATACAAAGGAAGATAGCAGTCATTCCAAAGACCTCAAAAGTTGAGAGATTGAAAGAGAATCTGCAAGTTTTGATGACTTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

252

Amino Acids

27.71

Weight (kDa)

7.06

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	14 - 164	5.7e-26	Aldo/keto reductase family
Aldo_ket_red	PF00248	203 - 248	3.8e-06	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	167, 491
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	281, 308
AfaI	GTAC	2 cut(s)	364, 430
AfiI	CCNNNNNNNGG	3 cut(s)	41, 551, 554
AflII	CTTAAG	1 cut(s)	614
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	250, 588, 724, 753
AjnI	CCWGG	2 cut(s)	420, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	4 cut(s)	295, 451, 538, 756
AluI	AGCT	4 cut(s)	295, 451, 538, 756
Alw26I	GTCTC	2 cut(s)	273, 462
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	3 cut(s)	228, 270, 564
ApeKI	GCWGC	2 cut(s)	131, 647
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	550
AspLEI	GCGC	5 cut(s)	60, 131, 169, 491, 532
AsuII	TTCGAA	1 cut(s)	472
AvrII	CCTAGG	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	118, 659
BciT130I	CCWGG	2 cut(s)	422, 433
BcoDI	GTCTC	2 cut(s)	273, 462
BfaI	CTAG	3 cut(s)	236, 311, 551
BfmI	CTRYAG	4 cut(s)	274, 336, 510, 533
BfrI	CTTAAG	1 cut(s)	614
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	132, 648
BlnI	CCTAGG	1 cut(s)	550
BlsI	GCNGC	2 cut(s)	133, 649
Bme1390I	CCNGG	2 cut(s)	422, 433
BmrFI	CCNGG	2 cut(s)	422, 433
BmsI	GCATC	2 cut(s)	21, 384
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	472
BsaJI	CCNNGG	3 cut(s)	253, 420, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 551, 554
Bse1I	ACTGG	4 cut(s)	231, 358, 373, 608
BseBI	CCWGG	2 cut(s)	422, 433
BseDI	CCNNGG	3 cut(s)	253, 420, 550
BseGI	GGATG	4 cut(s)	214, 388, 399, 607
BseLI	CCNNNNNNNGG	3 cut(s)	41, 551, 554
BseMII	CTCAG	1 cut(s)	676
BseNI	ACTGG	4 cut(s)	231, 358, 373, 608
BseXI	GCAGC	2 cut(s)	118, 659
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	2 cut(s)	167, 491
BshFI	GGCC	3 cut(s)	230, 272, 566
BslI	CCNNNNNNNGG	3 cut(s)	41, 551, 554
BsmAI	GTCTC	2 cut(s)	273, 462
BsmBI	CGTCTC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	230, 272, 566
Bsp119I	TTCGAA	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	70, 75, 313, 604
Bsp19I	CCATGG	1 cut(s)	253
BspANI	GGCC	3 cut(s)	230, 272, 566
BspCNI	CTCAG	1 cut(s)	675
BspFNI	CGCG	2 cut(s)	167, 491
BspMAI	CTGCAG	1 cut(s)	278
BspPI	GGATC	1 cut(s)	599
BspT104I	TTCGAA	1 cut(s)	472
BspTI	CTTAAG	1 cut(s)	614
BsrI	ACTGG	4 cut(s)	231, 358, 373, 608
BssECI	CCNNGG	3 cut(s)	253, 420, 550
BssMI	GATC	4 cut(s)	70, 75, 313, 604
BssT1I	CCWWGG	2 cut(s)	253, 550
Bst2UI	CCWGG	2 cut(s)	422, 433
BstAFI	CTTAAG	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	171, 274, 453
BstDEI	CTNAG	4 cut(s)	225, 573, 627, 662
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	4 cut(s)	214, 388, 399, 607
BstFNI	CGCG	2 cut(s)	167, 491
BstHHI	GCGC	5 cut(s)	60, 131, 169, 491, 532
BstKTI	GATC	4 cut(s)	73, 78, 316, 607
BstMAI	GTCTC	2 cut(s)	273, 462
BstMBI	GATC	4 cut(s)	70, 75, 313, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	422, 433
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	420, 431
BstSFI	CTRYAG	4 cut(s)	274, 336, 510, 533
BstUI	CGCG	2 cut(s)	167, 491
BstV1I	GCAGC	2 cut(s)	118, 659
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	230, 272, 566
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	214, 388, 399, 607
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	171, 274, 453
CfoI	GCGC	5 cut(s)	60, 131, 169, 491, 532
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	363, 429
CviAII	CATG	5 cut(s)	61, 254, 260, 403, 437
CviQI	GTAC	2 cut(s)	363, 429
DdeI	CTNAG	4 cut(s)	225, 573, 627, 662
DpnI	GATC	4 cut(s)	72, 77, 315, 606
DpnII	GATC	4 cut(s)	70, 75, 313, 604
EaeI	YGGCCR	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	253, 550
Eco147I	AGGCCT	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	417
Eco57I	CTGAAG	2 cut(s)	281, 308
EcoRII	CCWGG	2 cut(s)	420, 431
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	253, 550
ErhI	CCWWGG	2 cut(s)	253, 550
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	5 cut(s)	64, 257, 263, 406, 440
FatI	CATG	5 cut(s)	60, 253, 259, 402, 436
Fnu4HI	GCNGC	2 cut(s)	132, 648
FokI	GGATG	4 cut(s)	221, 395, 406, 614
Fsp4HI	GCNGC	2 cut(s)	132, 648
FspBI	CTAG	3 cut(s)	236, 311, 551
GlaI	GCGC	5 cut(s)	59, 130, 168, 490, 531
GluI	GCNGC	2 cut(s)	132, 648
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	3 cut(s)	230, 272, 566
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	5 cut(s)	60, 131, 169, 491, 532
Hin1II	CATG	5 cut(s)	64, 257, 263, 406, 440
Hin6I	GCGC	5 cut(s)	58, 129, 167, 489, 530
HinP1I	GCGC	5 cut(s)	58, 129, 167, 489, 530
HindIII	AAGCTT	2 cut(s)	293, 449
HinfI	GANTC	4 cut(s)	325, 483, 493, 730
Hpy188I	TCNGA	3 cut(s)	15, 75, 80
Hpy188III	TCNNGA	4 cut(s)	28, 189, 199, 311
HpyCH4V	TGCA	4 cut(s)	173, 276, 647, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	4 cut(s)	225, 573, 627, 662
Hsp92II	CATG	5 cut(s)	64, 257, 263, 406, 440
HspAI	GCGC	5 cut(s)	58, 129, 167, 489, 530
Kzo9I	GATC	4 cut(s)	70, 75, 313, 604
Lsp1109I	GCAGC	2 cut(s)	118, 659
LweI	GCATC	2 cut(s)	21, 384
MaeI	CTAG	3 cut(s)	236, 311, 551
MalI	GATC	4 cut(s)	72, 77, 315, 606
MboI	GATC	4 cut(s)	70, 75, 313, 604
MboII	GAAGA	2 cut(s)	301, 694
MflI	RGATCY	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	3 cut(s)	6, 505, 588
MluNI	TGGCCA	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	93, 195, 199, 232, 262, 352, 379, 548, 715
Mox20I	TGGCCA	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	614
MspR9I	CCNGG	2 cut(s)	422, 433
MvaI	CCWGG	2 cut(s)	422, 433
MvnI	CGCG	2 cut(s)	167, 491
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	4 cut(s)	70, 75, 313, 604
NlaIII	CATG	5 cut(s)	64, 257, 263, 406, 440
NspI	RCATGY	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	325, 483, 493, 730
PkrI	GCNGC	2 cut(s)	133, 649
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	420, 431
PspGI	CCWGG	2 cut(s)	420, 431
PstI	CTGCAG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	364, 430
RsaNI	GTAC	2 cut(s)	363, 429
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	2 cut(s)	132, 648
Sau3AI	GATC	4 cut(s)	70, 75, 313, 604
ScrFI	CCNGG	2 cut(s)	422, 433
SetI	ASST	9 cut(s)	85, 224, 297, 434, 453, 540, 668, 707, 758
SfaNI	GCATC	2 cut(s)	21, 384
SfcI	CTRYAG	4 cut(s)	274, 336, 510, 533
SfuI	TTCGAA	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	3 cut(s)	6, 505, 588
SseBI	AGGCCT	1 cut(s)	272
SspMI	CTAG	3 cut(s)	236, 311, 551
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	420, 431
StyI	CCWWGG	2 cut(s)	253, 550
TaqI	TCGA	2 cut(s)	27, 472
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	6, 505, 588
TfiI	GAWTC	4 cut(s)	325, 483, 493, 730
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	131, 647
TspDTI	ATGAA	3 cut(s)	162, 205, 651
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	236, 311, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.