Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003235

Physical Location & Seq

Genomic Coordinates Forward (+)

25103971 .. 25105604

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAATTAGTCTGAATAGTGGGTTCGAGATGCCACTAATGGGTCTGGGTCTTTGGCGCATGGAAAAAGATCAGATCGGGCCTCTCATCATCACTGCCATCAAACTTGGCTATCGCCATTTTGACTGCGCTGCCCATTACAAGAATGAAGTAGAAGTTGGGAAGGCGCTTGCAGAAGCATTTCGGTCTGGACTTGTCAAGAGGGAGGATGTGTTCATTACCTCTAAGGCCAGTCTACAGCTTTGGAATTCAGACCATGGACATGTTGTTGGGGCCTGCAGAGACAGCCTGAAGAAGCTTCAGTTGGAGTATCTAGATCTCTACTTGATTCACTTTCCTATAGCCTCTACTCATACTGGAGTTGGTACTACTGGTAGTGTTTTGGATGAGGATAGGATGCTGGACATGGACACCACGATATCCCTGGAAAGTACCTGGCATGATATGGAAAAGCTTGTGTCTCTGGGATTAGAAGCACGGAATATATGCGCTACAGCTCATACCCCTCTAGGAGGCTCTGTGGCCAACACTAAGGACTTTGGTTCAATTTCTTGTTTGGATGATCCAATCCTTAAGGGTTTGGCTAAGAAGTATGAAAAGAGTGCAGCACAGATTGTTCTCAGGTGGGGAATACAAAGGAATATAGCAGTCATTCCAAAGACCTCAAAAGTTGAGAGATTGAAAGAGAATCTGCAAGTTCTTGATGACTTCAAGCTGAGCAAAGAGGACATGGACCTCATCAAAACCATGGATAGGAAATACAGGACCAATCCGGCTTCCAAGAGTTGGGGCCTCGATGTCTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

269

Amino Acids

30.01

Weight (kDa)

6.71

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	15 - 157	8.1e-20	Aldo/keto reductase family
Aldo_ket_red	PF00248	186 - 250	4.6e-10	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21250 AT2G21250 AT2G21260 AT2G21260
fragaria_vesca	FvH4_2g10630
malus_domestica	MD02G1264100.v1.1 MD02G1264600.v1.1 MD05G1054800.v1.1 MD07G1054400.v1.1 MD10G1062300.v1.1
prunus_persica	Prupe.2G061100_v2.0.a1 Prupe.2G061100_v2.0.a1 Prupe.8G083400_v2.0.a1 Prupe.8G083400_v2.0.a1
pyrus_communis	pycom02g22620 pycom05g04500 pycom07g04220
rosa_chinensis	RchiOBHm_Chr6g0268271 RchiOBHm_Chr6g0268301
rosa_laevigata	RLG00000013919 RLG00000013921
rosa_multiflora	Rmu_sc0009812.1_g000006 Rmu_sc0010202.1_g000007 Rmu_sc0010202.1_g000010
rosa_roxburghii	Rroxscaffold_7G00199870 Rroxscaffold_7G00199910
rosa_rugosa	Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160400 Rh6BG164500 Rh6BG164700 Rh6CG153700 Rh6CG153800 Rh6DG150200 Rh6DG150500
rosa_wichuraiana	Rw6G013860 Rw6G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	786
AccI	GTMKAC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	284, 311
AfaI	GTAC	2 cut(s)	367, 433
AfiI	CCNNNNNNNGG	4 cut(s)	41, 512, 753, 786
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	546, 682, 712
AjnI	CCWGG	2 cut(s)	423, 434
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 287, 319
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	241, 298, 454, 497, 715
AluI	AGCT	5 cut(s)	241, 298, 454, 497, 715
Alw26I	GTCTC	2 cut(s)	276, 465
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	5 cut(s)	80, 228, 273, 522, 790
ApeKI	GCWGC	2 cut(s)	131, 605
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	4 cut(s)	60, 131, 169, 491
AspS9I	GGNCC	5 cut(s)	80, 273, 733, 765, 790
AvaII	GGWCC	2 cut(s)	733, 765
BalI	TGGCCA	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	118, 617
BccI	CCATC	1 cut(s)	107
BcgI	CGANNNNNNTGC	1 cut(s)	785
BciT130I	CCWGG	2 cut(s)	425, 436
BcoDI	GTCTC	2 cut(s)	276, 465
BfaI	CTAG	2 cut(s)	314, 509
BfmI	CTRYAG	4 cut(s)	236, 277, 339, 492
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	572
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	2 cut(s)	132, 606
BlpI	GCTNAGC	1 cut(s)	716
BlsI	GCNGC	2 cut(s)	133, 607
Bme1390I	CCNGG	2 cut(s)	425, 436
Bme18I	GGWCC	2 cut(s)	733, 765
BmgT120I	GGNCC	5 cut(s)	80, 273, 733, 765, 790
BmiI	GGNNCC	2 cut(s)	274, 791
BmrFI	CCNGG	2 cut(s)	425, 436
BmsI	GCATC	2 cut(s)	21, 387
BpmI	CTGGAG	1 cut(s)	378
Bpu1102I	GCTNAGC	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	256, 423, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 504, 534
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 512, 753, 786
Bse1I	ACTGG	3 cut(s)	231, 361, 376
BseBI	CCWGG	2 cut(s)	425, 436
BseDI	CCNNGG	3 cut(s)	256, 423, 747
BseGI	GGATG	4 cut(s)	214, 391, 402, 565
BseLI	CCNNNNNNNGG	4 cut(s)	41, 512, 753, 786
BseMII	CTCAG	2 cut(s)	634, 707
BseNI	ACTGG	3 cut(s)	231, 361, 376
BseXI	GCAGC	2 cut(s)	118, 617
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	5 cut(s)	82, 230, 275, 524, 792
BsiSI	CCGG	1 cut(s)	773
BslI	CCNNNNNNNGG	4 cut(s)	41, 512, 753, 786
BsmAI	GTCTC	2 cut(s)	276, 465
BsnI	GGCC	5 cut(s)	82, 230, 275, 524, 792
Bsp143I	GATC	4 cut(s)	70, 75, 316, 562
Bsp1720I	GCTNAGC	1 cut(s)	716
Bsp19I	CCATGG	2 cut(s)	256, 747
BspANI	GGCC	5 cut(s)	82, 230, 275, 524, 792
BspCNI	CTCAG	2 cut(s)	633, 708
BspLI	GGNNCC	2 cut(s)	274, 791
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	557
BspTI	CTTAAG	1 cut(s)	572
BsrI	ACTGG	3 cut(s)	231, 361, 376
BssECI	CCNNGG	3 cut(s)	256, 423, 747
BssMI	GATC	4 cut(s)	70, 75, 316, 562
BssT1I	CCWWGG	2 cut(s)	256, 747
Bst2UI	CCWGG	2 cut(s)	425, 436
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	171, 277
BstDEI	CTNAG	5 cut(s)	225, 531, 585, 620, 716
BstDSI	CCRYGG	2 cut(s)	256, 747
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	214, 391, 402, 565
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	4 cut(s)	60, 131, 169, 491
BstKTI	GATC	4 cut(s)	73, 78, 319, 565
BstMAI	GTCTC	2 cut(s)	276, 465
BstMBI	GATC	4 cut(s)	70, 75, 316, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	2 cut(s)	425, 436
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	423, 434
BstSFI	CTRYAG	4 cut(s)	236, 277, 339, 492
BstV1I	GCAGC	2 cut(s)	118, 617
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	82, 230, 275, 524, 792
BtgI	CCRYGG	2 cut(s)	256, 747
BtsCI	GGATG	4 cut(s)	214, 391, 402, 565
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	171, 277
CfoI	GCGC	4 cut(s)	60, 131, 169, 491
Cfr13I	GGNCC	5 cut(s)	80, 273, 733, 765, 790
Csp6I	GTAC	2 cut(s)	366, 432
CviAII	CATG	7 cut(s)	61, 257, 263, 406, 440, 730, 748
CviQI	GTAC	2 cut(s)	366, 432
DdeI	CTNAG	5 cut(s)	225, 531, 585, 620, 716
DpnI	GATC	4 cut(s)	72, 77, 318, 564
DpnII	GATC	4 cut(s)	70, 75, 316, 562
EaeI	YGGCCR	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	256, 747
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	733, 765
Eco57I	CTGAAG	2 cut(s)	284, 311
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	2 cut(s)	273, 790
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	423, 434
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	256, 747
EcoT22I	ATGCAT	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	256, 747
FaeI	CATG	7 cut(s)	64, 260, 266, 409, 443, 733, 751
FatI	CATG	7 cut(s)	60, 256, 262, 405, 439, 729, 747
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	132, 606
FokI	GGATG	4 cut(s)	221, 398, 409, 572
Fsp4HI	GCNGC	2 cut(s)	132, 606
FspBI	CTAG	2 cut(s)	314, 509
GlaI	GCGC	4 cut(s)	59, 130, 168, 490
GluI	GCNGC	2 cut(s)	132, 606
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	5 cut(s)	82, 230, 275, 524, 792
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	4 cut(s)	60, 131, 169, 491
Hin1II	CATG	7 cut(s)	64, 260, 266, 409, 443, 733, 751
Hin6I	GCGC	4 cut(s)	58, 129, 167, 489
HinP1I	GCGC	4 cut(s)	58, 129, 167, 489
HindIII	AAGCTT	2 cut(s)	296, 452
HinfI	GANTC	2 cut(s)	328, 688
HpaII	CCGG	1 cut(s)	773
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	15, 75, 253
Hpy188III	TCNNGA	5 cut(s)	28, 189, 199, 314, 701
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	173, 279, 605, 694, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	5 cut(s)	225, 531, 585, 620, 716
Hsp92II	CATG	7 cut(s)	64, 260, 266, 409, 443, 733, 751
HspAI	GCGC	4 cut(s)	58, 129, 167, 489
Kzo9I	GATC	4 cut(s)	70, 75, 316, 562
Lsp1109I	GCAGC	2 cut(s)	118, 617
LweI	GCATC	2 cut(s)	21, 387
MaeI	CTAG	2 cut(s)	314, 509
MalI	GATC	4 cut(s)	72, 77, 318, 564
MboI	GATC	4 cut(s)	70, 75, 316, 562
MboII	GAAGA	1 cut(s)	304
MflI	RGATCY	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	3 cut(s)	6, 247, 546
MluNI	TGGCCA	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	524
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	425, 436
MvaI	CCWGG	2 cut(s)	425, 436
MwoI	GCNNNNNNNGC	1 cut(s)	285
NcoI	CCATGG	2 cut(s)	256, 747
NdeII	GATC	4 cut(s)	70, 75, 316, 562
NlaIII	CATG	7 cut(s)	64, 260, 266, 409, 443, 733, 751
NlaIV	GGNNCC	2 cut(s)	274, 791
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	328, 688
PflMI	CCANNNNNTGG	1 cut(s)	786
PkrI	GCNGC	2 cut(s)	133, 607
PscI	ACATGT	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	423, 434
PspGI	CCWGG	2 cut(s)	423, 434
PspN4I	GGNNCC	2 cut(s)	274, 791
PspPI	GGNCC	5 cut(s)	80, 273, 733, 765, 790
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	367, 433
RsaNI	GTAC	2 cut(s)	366, 432
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	2 cut(s)	132, 606
Sau3AI	GATC	4 cut(s)	70, 75, 316, 562
Sau96I	GGNCC	5 cut(s)	80, 273, 733, 765, 790
ScrFI	CCNGG	2 cut(s)	425, 436
SfaNI	GCATC	2 cut(s)	21, 387
SfcI	CTRYAG	4 cut(s)	236, 277, 339, 492
SinI	GGWCC	2 cut(s)	733, 765
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	6, 247, 546
SspMI	CTAG	2 cut(s)	314, 509
StyD4I	CCNGG	2 cut(s)	423, 434
StyI	CCWWGG	2 cut(s)	256, 747
TaqI	TCGA	2 cut(s)	27, 795
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	6, 247, 546
TfiI	GAWTC	2 cut(s)	328, 688
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	131, 605
TspDTI	ATGAA	3 cut(s)	162, 205, 609
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	786
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	733, 765
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	2 cut(s)	314, 509
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.