AT2G22660

cellular response to osmotic stress

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9627342 .. 9631283
3942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22660.2

Sequence Viewer

Length: 1761 bp
ATGGATAAGGAGAAGGATCATGAAGTGGAGTGGCTTGAAGCTCAGAAGATAGAAATAAGCGTTGACTTATTAGCTGCAGCGAAACAACACCTTTTGTTCCTTGAAACTGTTGATAGGAATCGATGGCTCTACGATGGTCCTGCGCTTGAAAAAGCCATCTACAGGTACAATGCTTGTTGGCTTCCTTTGCTTGTTAAATACTCTGAGTCATCATCGGTTAGTGAAGGGTCTTTGGTCCCTCCTCTTGATTGTGAATGGATTTGGCATTGTCACAGGCTTAATCCGGTGAGGTATAATTCTGACTGTGAGCAATTTTACGGGAGAGTTCTCGACAATTCTGGAGTTCTTTCTTCTGTTGATGGGAACTGCAAATTGAAAACTGAAGATTTGTGGAAAAGATTGTACCCTGATGAACCTTATGAGCTTGACTTGGATAACATAGACTTAGAGGACATCTCTGAGAAATCTTCAGCTCTTGAGAAATGCACCAAATATGATCTTGTTTCAGCTGTTAAGAGGCAGAGCCCATTTTACTACCAGGTTTCGAGGTCCCATGTAAACAGTGACATTTTTCTACAAGAAGCTGTTGCTAGATATAAGGGGTTTCTCTATCTGATAAAGATGAACAGAGAAAGGTCTTTAAAAAGGTTTTGTGTTCCGACTTACGATGTTGACCTTATCTGGCACACACATCAGCTGCACCCAGTTTCTTACTGTGATGATATGGTGAAGCTCATTGGTAAAGTGTTGGAGCATGATGACACAGATTCTGACCGAGGCAAAGGTAAGAAGCTCGATACCGGTTTTTCTAAGACTACTGCACAATGGGAAGAGACATTCGGTACAAGGTACTGGAAAGCCGGTGCAATGCATAGAGGCAAGACACCTGTACCTGTCACAAATTCTCCTTATGCTTCTGATGTTTTGGTCAAAGACCCAACTGCAAAAGACGATTTCCAGAATTTAATCCAATTCCCAGAGGTGGAAGTTGTTGAGGTTCTCTTGGAGATTATCGGGGTTAGAAACTTACCAGATGGACATAAGGGAAAGGTCTCGGTTATGTTCAGTAAAACTCAGCCGGATTCTCTTTTCAATGCTGAACGTAGACTGACCATTTTATCCGAGGTTGGGGAAAAGCAAGTAGCTACTTTCCAGTGTGAACCTACAGGAGAGCTTGTTTTCAAACTTATTTCCTGTTCACCGTCTAAGATACCAGTTTCAAGAGAGCCTAAAAACTTGGGTTTTGCTTCTTTATCACTAAAGGAGTTTCTGTTTCCAGTTATTACTCAACTCTCTGTTGAGAAGTGGTTGGAGTTAACACCCAGTAAAGGTAGTCAAACAGATACGAAACCCATAAGCCTGCGAGTCGCTGTCTCGTTTACTCCACCAGTACGCAGTCCATCAGTCTTACACATGGTTCAATCAAGACCATCGTGCAAAGGCTCTTGCTTCTTTCCAATCATTGGAAAGTCCCGTCTTGCTAAAAGTTCAACACACATTGTTGATGAAACCCAAACAGAGGTGATCACACTTCAAATTAGGAACTCCGCTGATGGAGGAATACTTAAAGATGATCAGAGACAAGTTATGGGTGTGACAGACTCTGGTGAAACTCGCGTGCTTGCGGTTTATACTGGTAGTTTCTGGTCTTTGCTGGACTCGAAATGGTCACTTAAGCAAATAAACGCCTCCACTGCAGATAATCCGCTCTTTGAGATTTTGGGCCCTCGAGTGGTATATTCCACCATTTTATTCCAGTAA

Protein Analysis

586

Amino Acids

66.48

Weight (kDa)

5.98

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP-like PF07173 10 - 101 6.4e-08 Glycine-rich domain-containing protein-like
GRDP-like PF07173 97 - 241 3.2e-56 Glycine-rich domain-containing protein-like
C2_GRDP PF25334 328 - 462 3.2e-54 C2 domain of glycine-rich domain-containing protein
GRDP_C PF25335 500 - 630 4.6e-26 Glycine Rich Domain Protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccBSI CCGCTC 1 cut(s) 1708
AccI GTMKAC 1 cut(s) 1105
AccII CGCG 1 cut(s) 1617
AciI CCGC 3 cut(s) 1548, 1625, 1706
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 2 cut(s) 901, 961
AcuI CTGAAG 2 cut(s) 402, 453
AfaI GTAC 6 cut(s) 167, 404, 844, 851, 891, 1392
AfiI CCNNNNNNNGG 7 cut(s) 162, 982, 1128, 1328, 1463, 1519, 1732
AflII CTTAAG 1 cut(s) 1673
AgeI ACCGGT 1 cut(s) 800
AjnI CCWGG 1 cut(s) 537
Alw26I GTCTC 4 cut(s) 827, 1057, 1378, 1573
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 2 cut(s) 770, 1604
Ama87I CYCGRG 1 cut(s) 1728
AoxI GGCC 1 cut(s) 1723
ApaI GGGCCC 1 cut(s) 1727
ApeKI GCWGC 3 cut(s) 74, 77, 697
ApoI RAATTY 2 cut(s) 901, 961
AsiGI ACCGGT 1 cut(s) 800
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 5 cut(s) 137, 235, 549, 1723, 1724
AsuHPI GGTGA 5 cut(s) 298, 739, 1191, 1534, 1619
AvaI CYCGRG 1 cut(s) 1728
AvaII GGWCC 3 cut(s) 137, 235, 549
BaeGI GKGCMC 1 cut(s) 1727
BaeI ACNNNNGTAYC 2 cut(s) 873, 906
BanII GRGCYC 2 cut(s) 527, 1727
BbvI GCAGC 3 cut(s) 61, 89, 684
BccI CCATC 8 cut(s) 117, 128, 164, 353, 1028, 1408, 1438, 1547
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 539
BclI TGATCA 2 cut(s) 1524, 1573
BcoDI GTCTC 4 cut(s) 827, 1057, 1378, 1573
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 4 cut(s) 75, 160, 1164, 1695
BfrI CTTAAG 1 cut(s) 1673
BisI GCNGC 3 cut(s) 75, 78, 698
BlsI GCNGC 3 cut(s) 76, 79, 699
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 3 cut(s) 137, 235, 549
BmeT110I CYCGRG 1 cut(s) 1728
BmgT120I GGNCC 5 cut(s) 137, 235, 549, 1723, 1724
BmiI GGNNCC 3 cut(s) 237, 551, 1725
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 2 cut(s) 698, 1317
BmuI ACTGGG 2 cut(s) 698, 1317
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 2 cut(s) 775, 1122
BsaWI WCCGGW 2 cut(s) 283, 800
BsaXI ACNNNNNCTCC 6 cut(s) 889, 919, 1161, 1191, 1256, 1286
Bsc4I CCNNNNNNNGG 7 cut(s) 162, 982, 1128, 1328, 1463, 1519, 1732
Bse118I RCCGGY 2 cut(s) 800, 860
Bse1I ACTGG 9 cut(s) 704, 857, 1153, 1214, 1277, 1323, 1388, 1639, 1756
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 539
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 775, 1122
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 7 cut(s) 162, 982, 1128, 1328, 1463, 1519, 1732
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 4 cut(s) 56, 195, 450, 1088
BseNI ACTGG 9 cut(s) 704, 857, 1153, 1214, 1277, 1323, 1388, 1639, 1756
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 1727
BseXI GCAGC 3 cut(s) 61, 89, 684
BsgI GTGCAG 2 cut(s) 683, 804
Bsh1236I CGCG 1 cut(s) 1617
BshFI GGCC 1 cut(s) 1725
BshTI ACCGGT 1 cut(s) 800
BshVI ATCGAT 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 1728
BsiSI CCGG 4 cut(s) 284, 801, 861, 1079
BslFI GGGAC 3 cut(s) 221, 535, 1456
BslI CCNNNNNNNGG 7 cut(s) 162, 982, 1128, 1328, 1463, 1519, 1732
BsmAI GTCTC 4 cut(s) 827, 1057, 1378, 1573
BsmFI GGGAC 3 cut(s) 221, 535, 1456
BsnI GGCC 1 cut(s) 1725
Bso31I GGTCTC 1 cut(s) 1057
BsoBI CYCGRG 1 cut(s) 1728
Bsp120I GGGCCC 1 cut(s) 1723
Bsp1286I GDGCHC 2 cut(s) 527, 1727
Bsp143I GATC 4 cut(s) 16, 496, 1524, 1573
BspACI CCGC 3 cut(s) 1548, 1625, 1706
BspANI GGCC 1 cut(s) 1725
BspCNI CTCAG 4 cut(s) 55, 196, 451, 1087
BspDI ATCGAT 1 cut(s) 121
BspFNI CGCG 1 cut(s) 1617
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 3 cut(s) 237, 551, 1725
BspMAI CTGCAG 2 cut(s) 79, 1699
BspPI GGATC 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 1673
BspTNI GGTCTC 1 cut(s) 1057
BsrBI CCGCTC 1 cut(s) 1708
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 2 cut(s) 800, 860
BsrI ACTGG 9 cut(s) 704, 857, 1153, 1214, 1277, 1323, 1388, 1639, 1756
BssAI RCCGGY 2 cut(s) 800, 860
BssECI CCNNGG 2 cut(s) 775, 1122
BssMI GATC 4 cut(s) 16, 496, 1524, 1573
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 5 cut(s) 109, 305, 563, 716, 1203
Bst6I CTCTTC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 1673
BstC8I GCNNGC 3 cut(s) 1361, 1619, 1623
BstDEI CTNAG 7 cut(s) 42, 204, 445, 459, 810, 1074, 1206
BstFNI CGCG 1 cut(s) 1617
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 4 cut(s) 19, 499, 1527, 1576
BstMAI GTCTC 4 cut(s) 827, 1057, 1378, 1573
BstMBI GATC 4 cut(s) 16, 496, 1524, 1573
BstMWI GCNNNNNNNGC 2 cut(s) 187, 1694
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 4 cut(s) 75, 160, 1164, 1695
BstSLI GKGCMC 1 cut(s) 1727
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 3 cut(s) 61, 89, 684
Bsu15I ATCGAT 1 cut(s) 121
BsuRI GGCC 1 cut(s) 1725
BsuTUI ATCGAT 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 1692
BtsIMutI CAGTG 3 cut(s) 568, 1160, 1692
Cac8I GCNNGC 3 cut(s) 1361, 1619, 1623
CaiI CAGNNNCTG 2 cut(s) 770, 1604
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 2 cut(s) 800, 860
Cfr13I GGNCC 5 cut(s) 137, 235, 549, 1723, 1724
ClaI ATCGAT 1 cut(s) 121
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 6 cut(s) 166, 403, 843, 850, 890, 1391
CspAI ACCGGT 1 cut(s) 800
CviAII CATG 4 cut(s) 20, 554, 755, 1414
CviQI GTAC 6 cut(s) 166, 403, 843, 850, 890, 1391
DdeI CTNAG 7 cut(s) 42, 204, 445, 459, 810, 1074, 1206
DpnI GATC 4 cut(s) 18, 498, 1526, 1575
DpnII GATC 4 cut(s) 16, 496, 1524, 1573
DraI TTTAAA 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 527, 1727
Eco31I GGTCTC 1 cut(s) 1057
Eco47I GGWCC 3 cut(s) 137, 235, 549
Eco57I CTGAAG 2 cut(s) 402, 453
Eco88I CYCGRG 1 cut(s) 1728
EcoO109I RGGNCCY 2 cut(s) 549, 1724
EcoRII CCWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 873
EcoT38I GRGCYC 2 cut(s) 527, 1727
FaeI CATG 4 cut(s) 23, 557, 758, 1417
FaqI GGGAC 3 cut(s) 221, 535, 1456
FatI CATG 4 cut(s) 19, 553, 754, 1413
FbaI TGATCA 2 cut(s) 1524, 1573
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 3 cut(s) 75, 78, 698
FriOI GRGCYC 2 cut(s) 527, 1727
Fsp4HI GCNGC 3 cut(s) 75, 78, 698
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 75, 78, 698
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 1725
HapII CCGG 4 cut(s) 284, 801, 861, 1079
HhaI GCGC 1 cut(s) 145
Hin1II CATG 4 cut(s) 23, 557, 758, 1417
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 3 cut(s) 64, 673, 1317
HindII GTYRAC 3 cut(s) 64, 673, 1317
HinfI GANTC 7 cut(s) 118, 206, 767, 1082, 1365, 1601, 1658
HpaI GTTAAC 1 cut(s) 1317
HpaII CCGG 4 cut(s) 284, 801, 861, 1079
HphI GGTGA 5 cut(s) 298, 739, 1191, 1534, 1619
Hpy166II GTNNAC 8 cut(s) 64, 559, 673, 1106, 1160, 1199, 1317, 1380
Hpy188III TCNNGA 8 cut(s) 20, 245, 329, 339, 476, 958, 1221, 1425
Hpy8I GTNNAC 8 cut(s) 64, 559, 673, 1106, 1160, 1199, 1317, 1380
HpyAV CCTTC 2 cut(s) 7, 218
HpyCH4III ACNGT 5 cut(s) 109, 305, 563, 716, 1203
HpyCH4IV ACGT 1 cut(s) 1102
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 1694
HpyF3I CTNAG 7 cut(s) 42, 204, 445, 459, 810, 1074, 1206
HpySE526I ACGT 1 cut(s) 1102
Hsp92II CATG 4 cut(s) 23, 557, 758, 1417
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 2 cut(s) 1524, 1573
KspAI GTTAAC 1 cut(s) 1317
Kzo9I GATC 4 cut(s) 16, 496, 1524, 1573
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 3 cut(s) 61, 89, 684
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 1102
MaeIII GTNAC 5 cut(s) 269, 563, 895, 1594, 1668
MalI GATC 4 cut(s) 18, 498, 1526, 1575
MbiI CCGCTC 1 cut(s) 1708
MboI GATC 4 cut(s) 16, 496, 1524, 1573
MboII GAAGA 5 cut(s) 58, 342, 395, 459, 842
MhlI GDGCHC 2 cut(s) 527, 1727
MluCI AATT 8 cut(s) 295, 311, 334, 371, 901, 961, 971, 1536
MlyI GAGTC 4 cut(s) 215, 1374, 1595, 1652
MmeI TCCRAC 3 cut(s) 683, 729, 1290
Mph1103I ATGCAT 1 cut(s) 873
MseI TTAA 8 cut(s) 195, 279, 513, 641, 965, 1316, 1566, 1674
MspA1I CMGCKG 3 cut(s) 509, 697, 1550
MspCI CTTAAG 1 cut(s) 1673
MspI CCGG 4 cut(s) 284, 801, 861, 1079
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 2 cut(s) 187, 1694
NdeII GATC 4 cut(s) 16, 496, 1524, 1573
NlaIII CATG 4 cut(s) 23, 557, 758, 1417
NlaIV GGNNCC 3 cut(s) 237, 551, 1725
NmuCI GTSAC 5 cut(s) 269, 563, 895, 1594, 1668
NsiI ATGCAT 1 cut(s) 873
PaeR7I CTCGAG 1 cut(s) 1728
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 3 cut(s) 118, 767, 1082
PflMI CCANNNNNTGG 1 cut(s) 1463
PinAI ACCGGT 1 cut(s) 800
PkrI GCNGC 3 cut(s) 76, 79, 699
PleI GAGTC 4 cut(s) 214, 1373, 1595, 1652
PpsI GAGTC 4 cut(s) 214, 1373, 1595, 1652
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 237, 551, 1725
PspOMI GGGCCC 1 cut(s) 1723
PspPI GGNCC 5 cut(s) 137, 235, 549, 1723, 1724
PspPPI RGGWCCY 1 cut(s) 549
PspXI VCTCGAGB 1 cut(s) 1728
PstI CTGCAG 2 cut(s) 79, 1699
PstNI CAGNNNCTG 2 cut(s) 770, 1604
PvuII CAGCTG 2 cut(s) 509, 697
RsaI GTAC 6 cut(s) 167, 404, 844, 851, 891, 1392
RsaNI GTAC 6 cut(s) 166, 403, 843, 850, 890, 1391
SaqAI TTAA 8 cut(s) 195, 279, 513, 641, 965, 1316, 1566, 1674
SatI GCNGC 3 cut(s) 75, 78, 698
Sau3AI GATC 4 cut(s) 16, 496, 1524, 1573
Sau96I GGNCC 5 cut(s) 137, 235, 549, 1723, 1724
SchI GAGTC 4 cut(s) 215, 1374, 1595, 1652
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 527, 1727
SexAI ACCWGGT 1 cut(s) 537
SfcI CTRYAG 4 cut(s) 75, 160, 1164, 1695
Sfr274I CTCGAG 1 cut(s) 1728
SinI GGWCC 3 cut(s) 137, 235, 549
SlaI CTCGAG 1 cut(s) 1728
SmlI CTYRAG 3 cut(s) 476, 1673, 1728
SmoI CTYRAG 3 cut(s) 476, 1673, 1728
Sse9I AATT 8 cut(s) 295, 311, 334, 371, 901, 961, 971, 1536
SsiI CCGC 3 cut(s) 1548, 1625, 1706
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 5 cut(s) 109, 305, 563, 716, 1203
TaiI ACGT 1 cut(s) 1105
TaqI TCGA 6 cut(s) 121, 330, 545, 795, 1661, 1729
TaqII GACCGA 1 cut(s) 789
TasI AATT 8 cut(s) 295, 311, 334, 371, 901, 961, 971, 1536
TfiI GAWTC 3 cut(s) 118, 767, 1082
Tru1I TTAA 8 cut(s) 195, 279, 513, 641, 965, 1316, 1566, 1674
Tru9I TTAA 8 cut(s) 195, 279, 513, 641, 965, 1316, 1566, 1674
TscAI CASTG 3 cut(s) 568, 1160, 1699
TseFI GTSAC 5 cut(s) 269, 563, 895, 1594, 1668
TseI GCWGC 3 cut(s) 74, 77, 697
Tsp45I GTSAC 5 cut(s) 269, 563, 895, 1594, 1668
TspDTI ATGAA 4 cut(s) 36, 426, 638, 1521
TspRI CASTG 3 cut(s) 568, 1160, 1699
Van91I CCANNNNNTGG 1 cut(s) 1463
Vha464I CTTAAG 1 cut(s) 1673
VpaK11BI GGWCC 3 cut(s) 137, 235, 549
XapI RAATTY 2 cut(s) 901, 961
XhoI CTCGAG 1 cut(s) 1728
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 1 cut(s) 591
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.