Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002521

Physical Location & Seq

Genomic Coordinates Reverse (-)

14714468 .. 14714714

Gene Structure 247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGATAGGTTCCCTGAGAAAATTGCTGCTGCTGTATATGCCACTGCTGTGATGCCAGGTCCTGATCTTAGTTACTTGACTATACATGATAAGAGACCATATCTTTGTAAACTACAGAGCTTAAGGAAAGATGGGATGCTAAGCAAATGTCATCGTACCAGCTATCGCCAGCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009787 GO:0009966 GO:0009987 GO:0010646 GO:0010928 GO:0016020 GO:0023051 GO:0033554 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071944 GO:0104004 GO:1901419 GO:1905957 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

59

Amino Acids

6.86

Weight (kDa)

9.76

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22660 AT2G22660 AT2G22660 AT4G37900 AT4G37900
fragaria_vesca	FvH4_1g18970 FvH4_1g18970 FvH4_1g18970 FvH4_5g33890 FvH4_5g33890 FvH4_5g33890
malus_domestica	MD01G1044900.v1.1 MD08G1208800.v1.1 MD08G1209100.v1.1
prunus_persica	Prupe.1G539900_v2.0.a1 Prupe.6G209600_v2.0.a1
pyrus_communis	pycom08g18020
rosa_chinensis	RchiOBHm_Chr2g0109991 RchiOBHm_Chr7g0233251 RchiOBHm_Chr7g0233261
rosa_laevigata	RLG00000001282 RLG00000017776
rosa_multiflora	Rmu_co8210630.1_g000001 Rmu_sc0004650.1_g000001 Rmu_sc0008314.1_g000009 Rmu_sc0035251.1_g000001 Rmu_sc0035252.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133800
rosa_rugosa	Rorug02G0165000 Rorug07G0279600
rosa_samantha	Rh2AG216500 Rh2BG226400 Rh2CG218700 Rh2DG222100 Rh7AG435600 Rh7AG435700 Rh7BG408000 Rh7CG454700 Rh7CG454800 Rh7DG423900
rosa_wichuraiana	Rw2G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	120, 162
AluI	AGCT	2 cut(s)	120, 162
Alw26I	GTCTC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	88
BfmI	CTRYAG	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	121
BisI	GCNGC	2 cut(s)	27, 30
BlpI	GCTNAGC	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	42, 126
Bpu1102I	GCTNAGC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	13, 16
BsmAI	GTCTC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	64
Bsp1720I	GCTNAGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	88
BssMI	GATC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	15, 68, 140
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	13, 16
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	170
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	2 cut(s)	120, 162
CviKI_1	RGCY	2 cut(s)	120, 162
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	3 cut(s)	15, 68, 140
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	37, 39, 83, 87, 100
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	27, 30
GluI	GCNGC	2 cut(s)	27, 30
Hin1II	CATG	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	15, 68, 140
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	27, 42, 69, 75, 172
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	2 cut(s)	42, 126
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	47
MspCI	CTTAAG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	28, 31
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	59
PspPPI	RGGWCCY	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	5 cut(s)	11, 61, 122, 164, 179
SfaNI	GCATC	2 cut(s)	42, 126
SfcI	CTRYAG	1 cut(s)	113
SgeI	CNNG	7 cut(s)	26, 68, 69, 74, 88, 98, 171
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	55
TasI	AATT	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	26, 29
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.