Rh7CG454700

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002521
Physical Location & Seq
Reverse (-)
59859044 .. 59859523
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG454700.1

Sequence Viewer

Length: 480 bp
ATGCTGGAAGTAGTTGCGGTGAGAAACTTACCAACCGAGCATAAAGGCAGCCTCTTTGTCTCTCTTAGTAAGAAACAGCCAGACTTTTTCTTCAGTACCAGGAGAACAATTGAGATTTCTTCTGACTCAGAGGAGAAAGAGGTTTCTGTTTTTCAAAGCCAACCTACCAGAGAGCTTCTATTCGAACTTATGTCACATTCCTCTTCAATACTGCCCATATCAAAGTCTCCTATACTACTGGGAACTTCTGAAATTACTCTAGACAACCTCGTCAACCCACTTTCTACACTGCAAGTGAAGAAGTGGTTAGAGCTCATGCCAAATTCTGGTGTCCTGGTTTTGAATCCCATCAGCCTATGCATCGCTCTCTCTTGGACCACTCCAATTCCATCACTATACATACTGCACATTCCTTCTCGAAGCCTAGTTTCTTTTCACTCTCTGGAAGGTTTCAAAATGCTAAACACTGGTCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

159

Amino Acids

17.73

Weight (kDa)

6.51

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2_GRDP PF25334 1 - 126 8.2e-47 C2 domain of glycine-rich domain-containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccB7I CCANNNNNTGG 1 cut(s) 326
AciI CCGC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 155, 207, 343, 454
AjnI CCWGG 2 cut(s) 98, 333
AluBI AGCT 2 cut(s) 175, 313
AluI AGCT 2 cut(s) 175, 313
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 64, 231
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 60
BccI CCATC 2 cut(s) 356, 397
BciT130I CCWGG 2 cut(s) 100, 335
BcoDI GTCTC 2 cut(s) 64, 231
BfaI CTAG 2 cut(s) 260, 425
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 2 cut(s) 100, 335
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 100, 335
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 243, 472
BseBI CCWGG 2 cut(s) 100, 335
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 243, 472
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 2 cut(s) 64, 231
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 315
BspACI CCGC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 243, 472
Bst2UI CCWGG 2 cut(s) 100, 335
Bst6I CTCTTC 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 65, 127
BstMAI GTCTC 2 cut(s) 64, 231
BstNI CCWGG 2 cut(s) 100, 335
BstSCI CCNGG 2 cut(s) 98, 333
BstV1I GCAGC 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 287, 465
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 316, 473
CviJI RGCY 7 cut(s) 51, 79, 159, 175, 313, 354, 423
CviKI_1 RGCY 7 cut(s) 51, 79, 159, 175, 313, 354, 423
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 65, 127
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 98, 333
EcoT22I ATGCAT 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 2 cut(s) 319, 476
FaiI YATR 9 cut(s) 42, 191, 218, 233, 317, 358, 397, 401, 474
FatI CATG 2 cut(s) 315, 472
Fnu4HI GCNGC 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 260, 425
GluI GCNGC 1 cut(s) 49
Hin1II CATG 2 cut(s) 319, 476
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 2 cut(s) 125, 343
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 124, 130, 250
Hpy188III TCNNGA 3 cut(s) 260, 417, 443
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 423, 440
HpyCH4V TGCA 3 cut(s) 292, 360, 406
HpyF3I CTNAG 2 cut(s) 65, 127
Hsp92II CATG 2 cut(s) 319, 476
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 260, 425
MaeIII GTNAC 1 cut(s) 192
MboII GAAGA 4 cut(s) 82, 111, 195, 310
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 108, 252, 322, 384
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 62, 124, 133, 211, 278
Mph1103I ATGCAT 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 100, 335
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 2 cut(s) 100, 335
NlaIII CATG 2 cut(s) 319, 476
NmuCI GTSAC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 362
NspV TTCGAA 1 cut(s) 183
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 98, 333
PspGI CCWGG 2 cut(s) 98, 333
PspPI GGNCC 1 cut(s) 375
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SacI GAGCTC 1 cut(s) 315
SatI GCNGC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 375
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 100, 335
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 144, 166, 177, 270, 315, 451
SfaNI GCATC 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 1 cut(s) 375
Sse9I AATT 4 cut(s) 108, 252, 322, 384
SsiI CCGC 1 cut(s) 17
SspMI CTAG 2 cut(s) 260, 425
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 98, 333
TaqI TCGA 2 cut(s) 183, 418
TasI AATT 4 cut(s) 108, 252, 322, 384
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 2 cut(s) 294, 472
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 192
TspRI CASTG 2 cut(s) 294, 472
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 375
XapI RAATTY 1 cut(s) 322
XbaI TCTAGA 1 cut(s) 259
XspI CTAG 2 cut(s) 260, 425
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.