RchiOBHm_Chr7g0233251

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002521
Physical Location & Seq
Reverse (-)
57671093 .. 57671693
601 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20906

Sequence Viewer

Length: 495 bp
ATGCTTGTAGAGGTTATGCTGGAAGTAGTTGCGGTGAGAAACTTACCAACCAAGCATAAAGGCAGCCTCTTTGTCTCTCTTAGTAAGAAACAGCCAGACTTTTTCTTCAGTACCAGGAGAACAATTGAGATTTCTTCTGACTCAGAGGAGAAAGAGGTTTCTGTTTTTCAAAGCCAACCTACCGGAGAGCTTCTATTCGAACTTATGTCACATTCTTCTTCAATACTGCCCATATCAAAGTCTCCTATACTACTGGGAACTTCTGAAATTACTCTAGACAACCTCGTCAACCCACTTTCTACACTGCAAGTGAAGAAGTGGTTAGAGCTCATGCCAAATTCTGGTGTCCTGGTTTTGAATCCCATCAGCCTATGCATCGCTCTCTCTTGGACCACTCCAATTCCATCACTATACATACTGCACATTCCTTCTCGAAGCCTAGTTTCTTTTCACTCTCTGGAAGGTTTCAAAATGCTAAACACTGGTCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

164

Amino Acids

18.2

Weight (kDa)

6.51

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2_GRDP PF25334 1 - 131 8.4e-51 C2 domain of glycine-rich domain-containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 4 cut(s) 170, 222, 358, 469
AjnI CCWGG 2 cut(s) 113, 348
AluBI AGCT 2 cut(s) 190, 328
AluI AGCT 2 cut(s) 190, 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 79, 246
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 371, 412
BciT130I CCWGG 2 cut(s) 115, 350
BcoDI GTCTC 2 cut(s) 79, 246
BfaI CTAG 2 cut(s) 275, 440
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 2 cut(s) 115, 350
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 115, 350
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 258, 487
BseBI CCWGG 2 cut(s) 115, 350
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 258, 487
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 79, 246
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 330
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 198
BsrI ACTGG 2 cut(s) 258, 487
Bst2UI CCWGG 2 cut(s) 115, 350
BstBI TTCGAA 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 80, 142
BstMAI GTCTC 2 cut(s) 79, 246
BstNI CCWGG 2 cut(s) 115, 350
BstSCI CCNGG 2 cut(s) 113, 348
BstV1I GCAGC 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 2 cut(s) 302, 480
Cfr13I GGNCC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 331, 488
CviJI RGCY 7 cut(s) 66, 94, 174, 190, 328, 369, 438
CviKI_1 RGCY 7 cut(s) 66, 94, 174, 190, 328, 369, 438
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 80, 142
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 113, 348
EcoT22I ATGCAT 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 2 cut(s) 334, 491
FatI CATG 2 cut(s) 330, 487
Fnu4HI GCNGC 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 2 cut(s) 275, 440
GluI GCNGC 1 cut(s) 64
HapII CCGG 1 cut(s) 183
Hin1II CATG 2 cut(s) 334, 491
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 140, 358
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 139, 145, 265
Hpy188III TCNNGA 3 cut(s) 275, 432, 458
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 438, 455
HpyCH4V TGCA 3 cut(s) 307, 375, 421
HpyF3I CTNAG 2 cut(s) 80, 142
Hsp92II CATG 2 cut(s) 334, 491
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 384
MaeI CTAG 2 cut(s) 275, 440
MaeIII GTNAC 1 cut(s) 207
MboII GAAGA 5 cut(s) 97, 126, 207, 210, 325
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 123, 267, 337, 399
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 5 cut(s) 4, 77, 139, 148, 293
Mph1103I ATGCAT 1 cut(s) 377
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 115, 350
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 2 cut(s) 115, 350
NlaIII CATG 2 cut(s) 334, 491
NmuCI GTSAC 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 377
NspV TTCGAA 1 cut(s) 198
PfeI GAWTC 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 113, 348
PspGI CCWGG 2 cut(s) 113, 348
PspPI GGNCC 1 cut(s) 390
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 330
SatI GCNGC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 115, 350
SduI GDGCHC 1 cut(s) 330
SetI ASST 7 cut(s) 15, 159, 181, 192, 285, 330, 466
SfaNI GCATC 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 1 cut(s) 390
Sse9I AATT 4 cut(s) 123, 267, 337, 399
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 275, 440
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 113, 348
TaqI TCGA 2 cut(s) 198, 433
TasI AATT 4 cut(s) 123, 267, 337, 399
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 2 cut(s) 309, 487
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 207
TspRI CASTG 2 cut(s) 309, 487
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 1 cut(s) 337
XbaI TCTAGA 1 cut(s) 274
XspI CTAG 2 cut(s) 275, 440
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.