pycom08g18020

Glycine-rich domain-containing protein-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
18242995 .. 18245098
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18020.3

Sequence Viewer

Length: 1647 bp
ATGGAGAGGAAGCAAGAACGAGAGTGGGCCGAAGCACAAAAGATTGTGATAAGCAAAGACCTTGTGGCTGCAGCTAAACAGCAGCTGCAGTTTCTAGCAGTTGTTGATCGAAACCAGCATCTCTATGACGGTCCTGCTTTGTACAAGGCCATTTATCGGTACAAATATTGTTGGCTTCCCTTACTTGCCAAGTATGCTGAATCTGAGGTTTCAGAAGGTCCTCTCGTTGTGCCTCTTGATTGCGAATGGATTTGGCATTGTCACAGGCTCAATCCGGTGCGTTATGTCACTGATTGCGCAAATCTCTGCGGAAGAATCCTTGTGAACCACAACATTGTATCCTCCATTCAGGGAATCTGCAAAAAGAAAACAGAAGAAATTTGGATCAAACTATATCCTGAAGAGCCATATGAACTCGATATGAGTAGCTGCCTTTCACATGGCAGTGCCAAAAATAATTATGCAACTTCGGAAAGCACAAAGTATAATCTAGTCTCGGCTGTCAGAAGGCAGATTCCTTTCTTTTACCAGGTATCGAGATCTTACATGAATGACAACCTCTTTCTCGAGGGAGCTGTGGACAGGTACAAAGGGTTTTTGCATTTGATCAAGAGAAATAGGGAGAGGTCTATTACGCGCTTTTGTGTTCCGACTTATGACATTGACCTCATCTGGCACTCCCACCAATTGCATCCTGCTTCTTACTGTAAAGATCTTGTGGCAATAATGGGCAAGGTGTTAGAGCATGATGACACAGATTCTGACCGAACCAAGGGTCAAAAGTTAGATGTCGGGTTTTCTGAGACCGGCAAACAATGGGAAGAGACGTTCGGTTCAAGGTACTGGAGAGCAGGAGCAATGTACAGAGGCAGTGCTCCATCTCCTCTCCCCACCAATCTCAGCCAACTACAAATACAAACAGGGAGAAAGAAAGTTGGTCAATCTGATCGGAACAAGAATATTATTCAACTTCCAAAGACAACGTTTGTAGAGGTTATGCTGGAAATCGTGGCGGTCAAAGACTTACCAACCGGGCATAAAGGCGGCCTCTTTGTCACCTTCAGTAAGAAACAGCCAGACGTGTTCTTCAAGACTGGAAAAAGGATAAACATTTCTTCAGAATCAGAGCAGAAAGCGGTGTCTGTTGTTCAATGCGAACCTGCGGGAGAGCTTGTATTCGAGCTTATGTCGTATTCCCCTTCGATTCTGTCCATGTCAAAGACTCCTACACTGCTGGGAACTTCAACAATCACTTTAGATGACATCCTCAACCCTGTTTCTAAACTGCAAGTGGAGAAGTGGTTTCAGTTGACATCGAATTCTGCAGGTCCAGGTTCAAAGCCCATCAGCATACGCATTGCTCTCTCTTCAACTACTCCGATTCCATCACCATATGGTGGTGAAGACAAGGCAAATAGATGTGGTGGGGGCGGTGGTAACTGTGGTAGCCGGTGTGGTGGTGAAAATATGGCAAATAGTGGTGCTTGTGGTGGATGCGGTGGTGCATGTGGTGGTAAAAATATAGCAAATAGTGGTGCTTGTGGTGGATGCGGTGGTGGATGCGGTAGTGGATGCGGTGGCGGTGGTGGAGGAAATTGTGGTGGTGGTTGTGGCGGCGGCTGCAGGAGTGCCCGGTTTGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

59.79

Weight (kDa)

8.73

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 298
Acc36I ACCTGC 2 cut(s) 1168, 1316
AccB7I CCANNNNNTGG 1 cut(s) 1397
AccII CGCG 1 cut(s) 637
AclI AACGTT 1 cut(s) 983
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 2 cut(s) 378, 1318
AcuI CTGAAG 3 cut(s) 420, 1045, 1101
AfaI GTAC 5 cut(s) 143, 161, 587, 842, 863
AfiI CCNNNNNNNGG 4 cut(s) 156, 772, 1397, 1638
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 7 cut(s) 837, 968, 1090, 1151, 1245, 1338, 1371
AjiI CACGTC 1 cut(s) 1081
AjnI CCWGG 2 cut(s) 528, 1330
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
AluBI AGCT 6 cut(s) 74, 85, 429, 575, 1171, 1183
AluI AGCT 6 cut(s) 74, 85, 429, 575, 1171, 1183
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 3 cut(s) 499, 797, 818
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 2 cut(s) 85, 761
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 3 cut(s) 27, 147, 1045
ApeKI GCWGC 6 cut(s) 68, 71, 82, 85, 429, 1620
ApoI RAATTY 2 cut(s) 378, 1318
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspLEI GCGC 2 cut(s) 299, 639
AspS9I GGNCC 4 cut(s) 27, 131, 218, 1328
AsuC2I CCSGG 2 cut(s) 1033, 1633
AsuHPI GGTGA 4 cut(s) 1048, 1380, 1412, 1472
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 3 cut(s) 131, 218, 1328
BaeGI GKGCMC 1 cut(s) 1633
BbsI GAAGAC 1 cut(s) 1410
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 6 cut(s) 55, 72, 83, 94, 416, 1607
BccI CCATC 3 cut(s) 886, 1352, 1393
BciT130I CCWGG 2 cut(s) 530, 1332
BciVI GTATCC 1 cut(s) 349
BclI TGATCA 1 cut(s) 606
BcnI CCSGG 2 cut(s) 1033, 1633
BcoDI GTCTC 3 cut(s) 499, 797, 818
BfaI CTAG 2 cut(s) 95, 491
BfmI CTRYAG 4 cut(s) 69, 86, 1323, 1621
BfuAI ACCTGC 2 cut(s) 1168, 1316
BfuI GTATCC 1 cut(s) 349
BglII AGATCT 2 cut(s) 539, 712
BisI GCNGC 9 cut(s) 69, 72, 83, 86, 430, 1045, 1615, 1618, 1621
BlsI GCNGC 9 cut(s) 70, 73, 84, 87, 431, 1046, 1616, 1619, 1622
Bme1390I CCNGG 4 cut(s) 530, 1033, 1332, 1633
Bme18I GGWCC 3 cut(s) 131, 218, 1328
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 1 cut(s) 1081
BmgT120I GGNCC 4 cut(s) 27, 131, 218, 1328
BmrFI CCNGG 4 cut(s) 530, 1033, 1332, 1633
BmsI GCATC 6 cut(s) 127, 700, 1484, 1538, 1550, 1562
BpiI GAAGAC 1 cut(s) 1410
BpmI CTGGAG 1 cut(s) 865
BpuMI CCSGG 2 cut(s) 1033, 1633
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 1 cut(s) 771
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 4 cut(s) 1158, 1188, 1286, 1316
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 772, 1397, 1638
Bse118I RCCGGY 2 cut(s) 806, 1449
Bse1I ACTGG 2 cut(s) 848, 1099
Bse3DI GCAATG 2 cut(s) 864, 1356
BseBI CCWGG 2 cut(s) 530, 1332
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 6 cut(s) 691, 1263, 1499, 1553, 1565, 1577
BseLI CCNNNNNNNGG 4 cut(s) 156, 772, 1397, 1638
BseMI GCAATG 2 cut(s) 864, 1356
BseMII CTCAG 3 cut(s) 195, 792, 913
BseNI ACTGG 2 cut(s) 848, 1099
BseRI GAGGAG 1 cut(s) 873
BseSI GKGCMC 1 cut(s) 1633
BseXI GCAGC 6 cut(s) 55, 72, 83, 94, 416, 1607
BseYI CCCAGC 1 cut(s) 1234
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 3 cut(s) 29, 149, 1047
BsiHKAI GWGCWC 1 cut(s) 877
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 5 cut(s) 275, 807, 1032, 1450, 1633
BslI CCNNNNNNNGG 4 cut(s) 156, 772, 1397, 1638
BsmAI GTCTC 3 cut(s) 499, 797, 818
BsmBI CGTCTC 1 cut(s) 818
BsnI GGCC 3 cut(s) 29, 149, 1047
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 877, 1633
Bsp1407I TGTACA 2 cut(s) 141, 861
Bsp143I GATC 6 cut(s) 106, 384, 539, 606, 712, 946
BspANI GGCC 3 cut(s) 29, 149, 1047
BspCNI CTCAG 3 cut(s) 196, 793, 912
BspFNI CGCG 1 cut(s) 637
BspMAI CTGCAG 4 cut(s) 73, 90, 1327, 1625
BspMI ACCTGC 2 cut(s) 1168, 1316
BspPI GGATC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 797
BsrDI GCAATG 2 cut(s) 864, 1356
BsrFI RCCGGY 2 cut(s) 806, 1449
BsrGI TGTACA 2 cut(s) 141, 861
BsrI ACTGG 2 cut(s) 848, 1099
BssAI RCCGGY 2 cut(s) 806, 1449
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 6 cut(s) 106, 384, 539, 606, 712, 946
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 2 cut(s) 530, 1332
Bst4CI ACNGT 3 cut(s) 131, 707, 1442
Bst6I CTCTTC 3 cut(s) 396, 816, 1372
BstAUI TGTACA 2 cut(s) 141, 861
BstDEI CTNAG 3 cut(s) 204, 801, 899
BstF5I GGATG 6 cut(s) 691, 1263, 1499, 1553, 1565, 1577
BstFNI CGCG 1 cut(s) 637
BstHHI GCGC 2 cut(s) 299, 639
BstKTI GATC 6 cut(s) 109, 387, 542, 609, 715, 949
BstMAI GTCTC 3 cut(s) 499, 797, 818
BstMBI GATC 6 cut(s) 106, 384, 539, 606, 712, 946
BstMWI GCNNNNNNNGC 2 cut(s) 194, 1620
BstNI CCWGG 2 cut(s) 530, 1332
BstNSI RCATGY 1 cut(s) 1509
BstSCI CCNGG 4 cut(s) 528, 1031, 1330, 1631
BstSFI CTRYAG 4 cut(s) 69, 86, 1323, 1621
BstSLI GKGCMC 1 cut(s) 1633
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 6 cut(s) 55, 72, 83, 94, 416, 1607
BstV2I GAAGAC 1 cut(s) 1410
BstX2I RGATCY 2 cut(s) 539, 712
BstYI RGATCY 2 cut(s) 539, 712
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 3 cut(s) 29, 149, 1047
BtrI CACGTC 1 cut(s) 1081
BtsCI GGATG 6 cut(s) 691, 1263, 1499, 1553, 1565, 1577
BtsI GCAGTG 3 cut(s) 451, 877, 1229
BtsIMutI CAGTG 4 cut(s) 288, 451, 877, 1229
BveI ACCTGC 2 cut(s) 1168, 1316
CaiI CAGNNNCTG 2 cut(s) 85, 761
CfoI GCGC 2 cut(s) 299, 639
Cfr10I RCCGGY 2 cut(s) 806, 1449
Cfr13I GGNCC 4 cut(s) 27, 131, 218, 1328
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 5 cut(s) 142, 160, 586, 841, 862
CviAII CATG 5 cut(s) 440, 547, 746, 1213, 1506
CviQI GTAC 5 cut(s) 142, 160, 586, 841, 862
DdeI CTNAG 3 cut(s) 204, 801, 899
DpnI GATC 6 cut(s) 108, 386, 541, 608, 714, 948
DpnII GATC 6 cut(s) 106, 384, 539, 606, 712, 946
Eam1104I CTCTTC 3 cut(s) 396, 816, 1372
EarI CTCTTC 3 cut(s) 396, 816, 1372
Eco130I CCWWGG 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 797
Eco47I GGWCC 3 cut(s) 131, 218, 1328
Eco57I CTGAAG 3 cut(s) 420, 1045, 1101
Eco88I CYCGRG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 1318
EcoRII CCWGG 2 cut(s) 528, 1330
EcoT14I CCWWGG 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 818
FaeI CATG 5 cut(s) 443, 550, 749, 1216, 1509
FatI CATG 5 cut(s) 439, 546, 745, 1212, 1505
FauI CCCGC 1 cut(s) 1156
FauNDI CATATG 2 cut(s) 409, 1393
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 9 cut(s) 69, 72, 83, 86, 430, 1045, 1615, 1618, 1621
FokI GGATG 6 cut(s) 678, 1250, 1506, 1560, 1572, 1584
Fsp4HI GCNGC 9 cut(s) 69, 72, 83, 86, 430, 1045, 1615, 1618, 1621
FspBI CTAG 2 cut(s) 95, 491
FspI TGCGCA 1 cut(s) 298
GlaI GCGC 2 cut(s) 298, 638
GluI GCNGC 9 cut(s) 69, 72, 83, 86, 430, 1045, 1615, 1618, 1621
GsaI CCCAGC 1 cut(s) 1238
GsuI CTGGAG 1 cut(s) 865
HaeIII GGCC 3 cut(s) 29, 149, 1047
HapII CCGG 5 cut(s) 275, 807, 1032, 1450, 1633
HhaI GCGC 2 cut(s) 299, 639
Hin1II CATG 5 cut(s) 443, 550, 749, 1216, 1509
Hin6I GCGC 2 cut(s) 297, 637
HinP1I GCGC 2 cut(s) 297, 637
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HinfI GANTC 9 cut(s) 200, 315, 354, 514, 758, 1121, 1204, 1222, 1381
HpaII CCGG 5 cut(s) 275, 807, 1032, 1450, 1633
HphI GGTGA 4 cut(s) 1048, 1380, 1412, 1472
Hpy166II GTNNAC 3 cut(s) 325, 580, 1311
Hpy188III TCNNGA 6 cut(s) 236, 398, 537, 566, 610, 1090
Hpy8I GTNNAC 3 cut(s) 325, 580, 1311
HpyAV CCTTC 4 cut(s) 209, 501, 1069, 1209
HpyCH4III ACNGT 3 cut(s) 131, 707, 1442
HpyCH4IV ACGT 3 cut(s) 827, 983, 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 1620
HpyF3I CTNAG 3 cut(s) 204, 801, 899
HpySE526I ACGT 3 cut(s) 827, 983, 1080
Hsp92II CATG 5 cut(s) 443, 550, 749, 1216, 1509
HspAI GCGC 2 cut(s) 297, 637
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 6 cut(s) 106, 384, 539, 606, 712, 946
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 572, 854, 880
Lsp1109I GCAGC 6 cut(s) 55, 72, 83, 94, 416, 1607
LweI GCATC 6 cut(s) 127, 700, 1484, 1538, 1550, 1562
MabI ACCWGGT 1 cut(s) 528
MaeI CTAG 2 cut(s) 95, 491
MaeII ACGT 3 cut(s) 827, 983, 1080
MaeIII GTNAC 4 cut(s) 260, 286, 1054, 1436
MalI GATC 6 cut(s) 108, 386, 541, 608, 714, 948
MboI GATC 6 cut(s) 106, 384, 539, 606, 712, 946
MboII GAAGA 8 cut(s) 324, 386, 413, 833, 1078, 1107, 1359, 1415
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 2 cut(s) 539, 712
MhlI GDGCHC 2 cut(s) 877, 1633
MluCI AATT 5 cut(s) 378, 457, 686, 1318, 1594
MlyI GAGTC 1 cut(s) 1216
MmeI TCCRAC 1 cut(s) 674
MslI CAYNNNNRTG 2 cut(s) 123, 444
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 5 cut(s) 275, 807, 1032, 1450, 1633
MspR9I CCNGG 4 cut(s) 530, 1033, 1332, 1633
MunI CAATTG 1 cut(s) 686
MvaI CCWGG 2 cut(s) 530, 1332
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 194, 1620
NciI CCSGG 2 cut(s) 1033, 1633
NdeI CATATG 2 cut(s) 409, 1393
NdeII GATC 6 cut(s) 106, 384, 539, 606, 712, 946
NlaIII CATG 5 cut(s) 443, 550, 749, 1216, 1509
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 3 cut(s) 260, 286, 1054
NsbI TGCGCA 1 cut(s) 298
NspI RCATGY 1 cut(s) 1509
PaeR7I CTCGAG 1 cut(s) 566
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 8 cut(s) 200, 315, 354, 514, 758, 1121, 1204, 1381
PflMI CCANNNNNTGG 1 cut(s) 1397
PkrI GCNGC 9 cut(s) 70, 73, 84, 87, 431, 1046, 1616, 1619, 1622
PleI GAGTC 1 cut(s) 1216
PpsI GAGTC 1 cut(s) 1216
PpuMI RGGWCCY 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 983
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 528, 1330
PspFI CCCAGC 1 cut(s) 1234
PspGI CCWGG 2 cut(s) 528, 1330
PspPI GGNCC 4 cut(s) 27, 131, 218, 1328
PspPPI RGGWCCY 1 cut(s) 218
PstI CTGCAG 4 cut(s) 73, 90, 1327, 1625
PstNI CAGNNNCTG 2 cut(s) 85, 761
PsuI RGATCY 2 cut(s) 539, 712
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 5 cut(s) 143, 161, 587, 842, 863
RsaNI GTAC 5 cut(s) 142, 160, 586, 841, 862
RseI CAYNNNNRTG 2 cut(s) 123, 444
SapI GCTCTTC 1 cut(s) 396
SatI GCNGC 9 cut(s) 69, 72, 83, 86, 430, 1045, 1615, 1618, 1621
Sau3AI GATC 6 cut(s) 106, 384, 539, 606, 712, 946
Sau96I GGNCC 4 cut(s) 27, 131, 218, 1328
SchI GAGTC 1 cut(s) 1216
ScrFI CCNGG 4 cut(s) 530, 1033, 1332, 1633
SduI GDGCHC 2 cut(s) 877, 1633
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 6 cut(s) 127, 700, 1484, 1538, 1550, 1562
SfcI CTRYAG 4 cut(s) 69, 86, 1323, 1621
Sfr274I CTCGAG 1 cut(s) 566
SinI GGWCC 3 cut(s) 131, 218, 1328
SlaI CTCGAG 1 cut(s) 566
SmiMI CAYNNNNRTG 2 cut(s) 123, 444
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 5 cut(s) 378, 457, 686, 1318, 1594
SspI AATATT 2 cut(s) 167, 961
SspMI CTAG 2 cut(s) 95, 491
StyD4I CCNGG 4 cut(s) 528, 1031, 1330, 1631
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 3 cut(s) 131, 707, 1442
TaiI ACGT 3 cut(s) 830, 986, 1083
TaqI TCGA 7 cut(s) 109, 417, 536, 567, 1179, 1202, 1316
TaqII GACCGA 1 cut(s) 780
TasI AATT 5 cut(s) 378, 457, 686, 1318, 1594
TatI WGTACW 2 cut(s) 141, 861
TauI GCSGC 3 cut(s) 1047, 1617, 1620
TfiI GAWTC 8 cut(s) 200, 315, 354, 514, 758, 1121, 1204, 1381
TscAI CASTG 4 cut(s) 295, 451, 877, 1236
TseFI GTSAC 3 cut(s) 260, 286, 1054
TseI GCWGC 6 cut(s) 68, 71, 82, 85, 429, 1620
Tsp45I GTSAC 3 cut(s) 260, 286, 1054
TspDTI ATGAA 2 cut(s) 426, 563
TspRI CASTG 4 cut(s) 295, 451, 877, 1236
Van91I CCANNNNNTGG 1 cut(s) 1397
VpaK11BI GGWCC 3 cut(s) 131, 218, 1328
XapI RAATTY 2 cut(s) 378, 1318
XceI RCATGY 1 cut(s) 1509
XhoI CTCGAG 1 cut(s) 566
XspI CTAG 2 cut(s) 95, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.