Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002521

Physical Location & Seq

Genomic Coordinates Forward (+)

27191019 .. 27192343

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1209100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGAGGAAGCAAGAACGAGAGTGGGCCGAAGCACAAAAGATTGTGATAAGCAAAGACCTTGTGGCTGCAGCTAAACAGCAGCTAAAGTTTCTAGCGGTTGTTGATCGAAACCAGCATCTCTATGACGGTCCTGCTTTGTACAAGGCCATTTATCGGTACAAATATTGTTGGCTTCCCTTACTTGCCAAGTATGCTGAATCTGAGGTTTCAGAAGGTCCTCTCGTCGTGCCTCTTGATTGCGAATGGATTTGGCATTGTCACAGGCTCAATCCGGTGCGTTATGTCACTGATTGCGCAAATCTCTGCGGAAGAATCCTTGTGAACCACAACTTTGTATCCTCCGTTCAGGGAACCTGCAAAAAGAAAACAGAAGAAATTTGGATCAAACTATATCCTGAAGAGCCATATGAGCTCGATATGAGTAGCTGCCTGTCACATGGCAGTGCCAAAAATTATTATGCAACTTCCGAAAGCACAAAGTATAATCTAGCATCGGCTGTCAGAAGGCAGATTCCTTTCTTTTACCAGGTAACGGAACAGAGATGTCATCTGAAATTTGTTATCCTATCCAAACTTTTGCTCAATAACTGCGACATGTACAAACAGGTGTCGAGATCTTACATGAATGACAACCTCTTTCTCGAGGGAGCTGTGGACAGATACAAAGGGTTTTTGCATTTGATCAAGAGAAATAGGGAGAGGTCTATTACGCGCTTTTGTGTTCCGACTTATGACATTGACCTCATCTGGCACTCCCACCAATTGCATCCTGCTTCTTACTGTAAAGATCTTGTGGCAATAATGGGCAAGGTGTTAGAGCATGATGACACAGATTCTGACCGAACCAAGGGTCAAAAGCTAGATGTCGGTTTTTCTGAGACCGCCAAGCAATGGGAAGAGATGTTCGGTTCAAGGTACTGGAGAGCAGGAGCAATGTACAGAGGCAGTGCTCCATCTCCGCTCCCCACCTATCTCAGCCAACTACAAATACAAACAGGGAGAAAGAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

339

Amino Acids

39.48

Weight (kDa)

8.95

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRDP-like	PF07173	10 - 98	7.2e-10	Glycine-rich domain-containing protein-like
GRDP-like	PF07173	94 - 264	8.2e-45	Glycine-rich domain-containing protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22660 AT2G22660 AT2G22660 AT4G37900 AT4G37900
fragaria_vesca	FvH4_1g18970 FvH4_1g18970 FvH4_1g18970 FvH4_5g33890 FvH4_5g33890 FvH4_5g33890
malus_domestica	MD01G1044900.v1.1 MD08G1208800.v1.1 MD08G1209100.v1.1
prunus_persica	Prupe.1G539900_v2.0.a1 Prupe.6G209600_v2.0.a1
pyrus_communis	pycom08g18020
rosa_chinensis	RchiOBHm_Chr2g0109991 RchiOBHm_Chr7g0233251 RchiOBHm_Chr7g0233261
rosa_laevigata	RLG00000001282 RLG00000017776
rosa_multiflora	Rmu_co8210630.1_g000001 Rmu_sc0004650.1_g000001 Rmu_sc0008314.1_g000009 Rmu_sc0035251.1_g000001 Rmu_sc0035252.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133800
rosa_rugosa	Rorug02G0165000 Rorug07G0279600
rosa_samantha	Rh2AG216500 Rh2BG226400 Rh2CG218700 Rh2DG222100 Rh7AG435600 Rh7AG435700 Rh7BG408000 Rh7CG454700 Rh7CG454800 Rh7DG423900
rosa_wichuraiana	Rw2G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	894
AccBSI	CCGCTC	1 cut(s)	964
AccII	CGCG	1 cut(s)	715
AciI	CCGC	4 cut(s)	98, 309, 885, 962
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	378, 557
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	5 cut(s)	143, 161, 602, 920, 941
AfiI	CCNNNNNNNGG	4 cut(s)	156, 535, 850, 894
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	1 cut(s)	915
AjnI	CCWGG	1 cut(s)	528
AloI	GAACNNNNNNTCC	2 cut(s)	890, 922
AluBI	AGCT	6 cut(s)	74, 85, 415, 429, 653, 862
AluI	AGCT	6 cut(s)	74, 85, 415, 429, 653, 862
Alw21I	GWGCWC	2 cut(s)	417, 955
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	839
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	27, 147
ApeKI	GCWGC	4 cut(s)	68, 71, 82, 429
ApoI	RAATTY	2 cut(s)	378, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AspLEI	GCGC	2 cut(s)	299, 717
AspS9I	GGNCC	3 cut(s)	27, 131, 218
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	131, 218
BanII	GRGCYC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	417, 955
BbvI	GCAGC	4 cut(s)	55, 83, 94, 416
BccI	CCATC	1 cut(s)	964
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	3 cut(s)	95, 491, 863
BfmI	CTRYAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	2 cut(s)	617, 790
BisI	GCNGC	4 cut(s)	69, 72, 83, 430
BlsI	GCNGC	4 cut(s)	70, 73, 84, 431
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	131, 218
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	27, 131, 218
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	3 cut(s)	127, 503, 778
BpmI	CTGGAG	1 cut(s)	943
BsaI	GGTCTC	1 cut(s)	875
BsaJI	CCNNGG	1 cut(s)	849
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 535, 850, 894
Bse1I	ACTGG	1 cut(s)	926
Bse3DI	GCAATG	2 cut(s)	899, 942
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	849
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	4 cut(s)	156, 535, 850, 894
BseMI	GCAATG	2 cut(s)	899, 942
BseMII	CTCAG	3 cut(s)	195, 870, 991
BseNI	ACTGG	1 cut(s)	926
BseXI	GCAGC	4 cut(s)	55, 83, 94, 416
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	2 cut(s)	29, 149
BsiHKAI	GWGCWC	2 cut(s)	417, 955
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	4 cut(s)	156, 535, 850, 894
BsmAI	GTCTC	1 cut(s)	875
BsnI	GGCC	2 cut(s)	29, 149
Bso31I	GGTCTC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	417, 955
Bsp1407I	TGTACA	3 cut(s)	141, 600, 939
Bsp143I	GATC	5 cut(s)	106, 384, 617, 684, 790
BspACI	CCGC	4 cut(s)	98, 309, 885, 962
BspANI	GGCC	2 cut(s)	29, 149
BspCNI	CTCAG	3 cut(s)	196, 871, 990
BspFNI	CGCG	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	875
BsrBI	CCGCTC	1 cut(s)	964
BsrDI	GCAATG	2 cut(s)	899, 942
BsrGI	TGTACA	3 cut(s)	141, 600, 939
BsrI	ACTGG	1 cut(s)	926
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	5 cut(s)	106, 384, 617, 684, 790
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	131, 785
Bst6I	CTCTTC	3 cut(s)	396, 894, 1004
BstAUI	TGTACA	3 cut(s)	141, 600, 939
BstDEI	CTNAG	3 cut(s)	204, 879, 977
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	1 cut(s)	715
BstHHI	GCGC	2 cut(s)	299, 717
BstKTI	GATC	5 cut(s)	109, 387, 620, 687, 793
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	5 cut(s)	106, 384, 617, 684, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 412
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	4 cut(s)	55, 83, 94, 416
BstX2I	RGATCY	2 cut(s)	617, 790
BstYI	RGATCY	2 cut(s)	617, 790
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	29, 149
BtsCI	GGATG	1 cut(s)	769
BtsI	GCAGTG	2 cut(s)	451, 955
BtsIMutI	CAGTG	3 cut(s)	288, 451, 955
BveI	ACCTGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	2 cut(s)	299, 717
Cfr13I	GGNCC	3 cut(s)	27, 131, 218
CsiI	ACCWGGT	1 cut(s)	528
Csp6I	GTAC	5 cut(s)	142, 160, 601, 919, 940
CviAII	CATG	4 cut(s)	440, 598, 625, 824
CviQI	GTAC	5 cut(s)	142, 160, 601, 919, 940
DdeI	CTNAG	3 cut(s)	204, 879, 977
DpnI	GATC	5 cut(s)	108, 386, 619, 686, 792
DpnII	GATC	5 cut(s)	106, 384, 617, 684, 790
Eam1104I	CTCTTC	3 cut(s)	396, 894, 1004
EarI	CTCTTC	3 cut(s)	396, 894, 1004
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	875
Eco47I	GGWCC	2 cut(s)	131, 218
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	4 cut(s)	443, 601, 628, 827
FatI	CATG	4 cut(s)	439, 597, 624, 823
FauNDI	CATATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	4 cut(s)	69, 72, 83, 430
FokI	GGATG	1 cut(s)	756
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	69, 72, 83, 430
FspBI	CTAG	3 cut(s)	95, 491, 863
FspI	TGCGCA	1 cut(s)	298
GlaI	GCGC	2 cut(s)	298, 716
GluI	GCNGC	4 cut(s)	69, 72, 83, 430
GsuI	CTGGAG	1 cut(s)	943
HaeIII	GGCC	2 cut(s)	29, 149
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	2 cut(s)	299, 717
Hin1II	CATG	4 cut(s)	443, 601, 628, 827
Hin6I	GCGC	2 cut(s)	297, 715
HinP1I	GCGC	2 cut(s)	297, 715
HinfI	GANTC	4 cut(s)	200, 315, 514, 836
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	325, 658
Hpy188I	TCNGA	8 cut(s)	205, 214, 472, 506, 555, 729, 841, 880
Hpy188III	TCNNGA	5 cut(s)	236, 398, 615, 644, 688
Hpy8I	GTNNAC	2 cut(s)	325, 658
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	209, 501
HpyCH4III	ACNGT	2 cut(s)	131, 785
HpyCH4V	TGCA	5 cut(s)	71, 360, 464, 679, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 412
HpyF3I	CTNAG	3 cut(s)	204, 879, 977
Hsp92II	CATG	4 cut(s)	443, 601, 628, 827
HspAI	GCGC	2 cut(s)	297, 715
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	5 cut(s)	106, 384, 617, 684, 790
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	4 cut(s)	650, 932, 958, 969
Lsp1109I	GCAGC	4 cut(s)	55, 83, 94, 416
LweI	GCATC	3 cut(s)	127, 503, 778
MabI	ACCWGGT	1 cut(s)	528
MaeI	CTAG	3 cut(s)	95, 491, 863
MaeIII	GTNAC	4 cut(s)	260, 286, 435, 532
MalI	GATC	5 cut(s)	108, 386, 619, 686, 792
MbiI	CCGCTC	1 cut(s)	964
MboI	GATC	5 cut(s)	106, 384, 617, 684, 790
MboII	GAAGA	4 cut(s)	324, 386, 413, 911
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	2 cut(s)	617, 790
MhlI	GDGCHC	2 cut(s)	417, 955
MluCI	AATT	4 cut(s)	378, 454, 557, 764
MmeI	TCCRAC	1 cut(s)	752
MslI	CAYNNNNRTG	2 cut(s)	123, 444
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	2 cut(s)	194, 412
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	5 cut(s)	106, 384, 617, 684, 790
NlaIII	CATG	4 cut(s)	443, 601, 628, 827
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	3 cut(s)	260, 286, 435
NsbI	TGCGCA	1 cut(s)	298
NspI	RCATGY	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	644
PciI	ACATGT	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	200, 315, 514, 836
PflMI	CCANNNNNTGG	1 cut(s)	894
PkrI	GCNGC	4 cut(s)	70, 73, 84, 431
PpuMI	RGGWCCY	1 cut(s)	218
PscI	ACATGT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	3 cut(s)	27, 131, 218
PspPPI	RGGWCCY	1 cut(s)	218
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	2 cut(s)	617, 790
RsaI	GTAC	5 cut(s)	143, 161, 602, 920, 941
RsaNI	GTAC	5 cut(s)	142, 160, 601, 919, 940
RseI	CAYNNNNRTG	2 cut(s)	123, 444
SacI	GAGCTC	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	4 cut(s)	69, 72, 83, 430
Sau3AI	GATC	5 cut(s)	106, 384, 617, 684, 790
Sau96I	GGNCC	3 cut(s)	27, 131, 218
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	417, 955
SexAI	ACCWGGT	1 cut(s)	528
SfaNI	GCATC	3 cut(s)	127, 503, 778
SfcI	CTRYAG	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	644
SinI	GGWCC	2 cut(s)	131, 218
SlaI	CTCGAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	2 cut(s)	123, 444
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	4 cut(s)	378, 454, 557, 764
SsiI	CCGC	4 cut(s)	98, 309, 885, 962
SspI	AATATT	1 cut(s)	167
SspMI	CTAG	3 cut(s)	95, 491, 863
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	131, 785
TaqI	TCGA	4 cut(s)	109, 417, 614, 645
TaqII	GACCGA	1 cut(s)	858
TasI	AATT	4 cut(s)	378, 454, 557, 764
TatI	WGTACW	3 cut(s)	141, 600, 939
TfiI	GAWTC	4 cut(s)	200, 315, 514, 836
TscAI	CASTG	3 cut(s)	295, 451, 955
TseFI	GTSAC	3 cut(s)	260, 286, 435
TseI	GCWGC	4 cut(s)	68, 71, 82, 429
Tsp45I	GTSAC	3 cut(s)	260, 286, 435
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	2 cut(s)	334, 551
TspRI	CASTG	3 cut(s)	295, 451, 955
Van91I	CCANNNNNTGG	1 cut(s)	894
VpaK11BI	GGWCC	2 cut(s)	131, 218
XapI	RAATTY	2 cut(s)	378, 557
XceI	RCATGY	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	644
XspI	CTAG	3 cut(s)	95, 491, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.