Rh7BG408000

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002521
Physical Location & Seq
Reverse (-)
45744686 .. 45745551
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG408000.1

Sequence Viewer

Length: 564 bp
ATGTGGAGTTTGCTCTTTTCAGTTTTTCTCAGCACAACTGCTAAGCCTTGTTTTGCAACCATTTTTGCTTACTTATTCTGCCAAGTTCAGGTGTGTTATGTAACTGATTGTGAAACTCTCTACGGGAGAATCCTCAACAACCAGAATGTTGTATCCTCCATTCGGGGAACTTACACAAAGAAAACTGAACAAATCTGGAACAAATTATATCCCCATGAGCCATATGAACTTCAAAACAACAGCTTCTCAGATGACGCTGCTATAAATCTTCAGAGAGTTTCAGAAAGCACCAAGTATGATCTAGTTTCAGCTGTCAAAAGGCAAATTCTTTTCTTCTATCAGGTATCCGGAGCTTGTGTGAAAGACGACCTTTTCCTCAAGGAAGCTGTGGCCAGATACAAAGGGTTTCTGCATTTGATCAAGAGAAACAGGCAGTTGTCTGTTAAGCGCTTTTGTGTTCCTACTTATGACATTGACCTCATCTGGCATTGTCACCAACTGCATCCTGCTACTTACTGCAAAGATCTTAAGGCCCATAATAGGCAAGGTGTTAGAGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

187

Amino Acids

21.87

Weight (kDa)

9.09

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP-like PF07173 33 - 175 6.4e-52 Glycine-rich domain-containing protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 254
AfeI AGCGCT 1 cut(s) 449
AfiI CCNNNNNNNGG 3 cut(s) 88, 162, 540
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 4 cut(s) 243, 311, 353, 386
AluI AGCT 4 cut(s) 243, 311, 353, 386
Aor13HI TCCGGA 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 449
AoxI GGCC 2 cut(s) 390, 531
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 485
BalI TGGCCA 1 cut(s) 392
BbvI GCAGC 1 cut(s) 244
BciVI GTATCC 2 cut(s) 163, 355
BclI TGATCA 1 cut(s) 417
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 451
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 2 cut(s) 163, 355
BglII AGATCT 1 cut(s) 523
BisI GCNGC 1 cut(s) 258
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 532
BmsI GCATC 1 cut(s) 511
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 162, 540
BseAI TCCGGA 1 cut(s) 347
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 3 cut(s) 88, 162, 540
BseMII CTCAG 2 cut(s) 43, 261
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 2 cut(s) 392, 533
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 88, 162, 540
BsnI GGCC 2 cut(s) 392, 533
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 3 cut(s) 298, 417, 523
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 392, 533
BspCNI CTCAG 2 cut(s) 42, 260
BspEI TCCGGA 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 527
BssMI GATC 3 cut(s) 298, 417, 523
BstAFI CTTAAG 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 29, 42, 247
BstF5I GGATG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 3 cut(s) 301, 420, 526
BstMBI GATC 3 cut(s) 298, 417, 523
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuI GTATCC 2 cut(s) 163, 355
BsuRI GGCC 2 cut(s) 392, 533
BtsCI GGATG 1 cut(s) 502
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 532
CseI GACGC 1 cut(s) 263
CviAII CATG 2 cut(s) 215, 558
CviJI RGCY 8 cut(s) 46, 220, 243, 311, 353, 386, 392, 533
CviKI_1 RGCY 8 cut(s) 46, 220, 243, 311, 353, 386, 392, 533
DdeI CTNAG 3 cut(s) 29, 42, 247
DpnI GATC 3 cut(s) 300, 419, 525
DpnII GATC 3 cut(s) 298, 417, 523
EaeI YGGCCR 1 cut(s) 390
Eco47III AGCGCT 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 254
FaeI CATG 2 cut(s) 218, 561
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 214, 557
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 489
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 449
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 2 cut(s) 392, 533
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 218, 561
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 1 cut(s) 129
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 485
Hpy188I TCNGA 3 cut(s) 250, 273, 283
Hpy188III TCNNGA 3 cut(s) 196, 348, 421
HpyCH4V TGCA 4 cut(s) 56, 412, 502, 519
HpyF3I CTNAG 3 cut(s) 29, 42, 247
Hsp92II CATG 2 cut(s) 218, 561
HspAI GCGC 1 cut(s) 448
Kpn2I TCCGGA 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 298, 417, 523
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 9 cut(s) 74, 155, 181, 326, 361, 406, 415, 469, 519
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 511
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 100, 491
MalI GATC 3 cut(s) 300, 419, 525
MboI GATC 3 cut(s) 298, 417, 523
MboII GAAGA 2 cut(s) 260, 325
MflI RGATCY 1 cut(s) 523
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 203, 324
MluNI TGGCCA 1 cut(s) 392
MnlI CCTC 4 cut(s) 143, 166, 386, 488
Mox20I TGGCCA 1 cut(s) 392
MroI TCCGGA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 392
MseI TTAA 2 cut(s) 444, 528
Msp20I TGGCCA 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 298, 417, 523
NlaIII CATG 2 cut(s) 218, 561
NmuCI GTSAC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 532
PsuI RGATCY 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 444, 528
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 298, 417, 523
Sau96I GGNCC 1 cut(s) 532
SetI ASST 9 cut(s) 93, 245, 313, 345, 355, 372, 388, 480, 550
SfaNI GCATC 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 377, 527
SmoI CTYRAG 2 cut(s) 377, 527
Sse9I AATT 2 cut(s) 203, 324
SspMI CTAG 1 cut(s) 302
TasI AATT 2 cut(s) 203, 324
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 2 cut(s) 444, 528
Tru9I TTAA 2 cut(s) 444, 528
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 527
XapI RAATTY 1 cut(s) 324
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.