Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002521

Physical Location & Seq

Genomic Coordinates Forward (+)

44110413 .. 44112744

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G539900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGAGGAAGCAAGAACTAGAGTGGTCTGAAGCGCAGAAGATTGTGATAAGCCGAGACCTTGTGGCTGCAGCTAAACAGCAGCTGCAATTTCTTGCCGTTGTTGATCGAAACCGGCATCTCTATGACAGCCCTGCTTTGTACAAGGCCATTAACCGGTACAAATATTGCTGGCTTCCTCTACTTGCCAAACATGCTGAATCTCAGGTTTCAGAAGGTCCTCTAGTCGTGCCTCTTGATTGTGAATGGATTTGGCATTGTCATAGGCTCAACCCGGTGCGTTGTGCGACTGATTATGCAAGTCCCTACAGGAGAATCCTGGACAACAAGAATGTTGTATCTTCAACTCAGAGAACTTGCAAAACGAAAACAGAAGAAATTTGGAACATACTGCCTCCTCATGAGCCATATGAACTCGATATGAAAGCACCAAGTATACGAAAGATGCAGCTTCAGAAAGCACCAAATTCTGACAGAACCAAGGGTCAAAAGCTAGATGTTGGGTTTTCTGAGATAACCAAGCAATGGGAAGAGACCTTTGGCACAAGGTTGGTGCTGATTGTGGCGGTCAAAGATTTACCAGTCGGGCATAAAGGCAGCCTCTTTGTCTCCTTTAGTAAGAAACAGCCAGACCTGTTCTTTAATACCAGGAGAAGGATAAACATTTCTTCTGAATCAGAGGAAATGGTTTCTTGTTTTCAATGCGAACCTACTGGACATATGCTATTTGAACTTATATCCTATTCTTCTTCGATTTTGTCAATATCAAAGACTCCTATACTATTAAAAAGTTCAACCATCACTCTAGAGGACCTCCTCAGTCCAGTTTCTAAACTGCAAGTAGAGAAGTGGTTTGAGTTGATGGCAAATTCTGCAGTTGTTGGATCAAAGCCCATCCTACGCATTGCTCTCTCTTTGACTACTGTGATTTTTTCGTCATATGTACTGCACATGGTTTGTACACGTCCATTATCAAAGTCTTGTTTCCTTTCACTCTCTGGAAGGTTTCAAAATGCTAAAAGCTGGACATGTTTTGTTGATGAGGCCGATAATGAGCTTATGAGCATCCAAATGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

360

Amino Acids

41.14

Weight (kDa)

8.9

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22660 AT2G22660 AT2G22660 AT4G37900 AT4G37900
fragaria_vesca	FvH4_1g18970 FvH4_1g18970 FvH4_1g18970 FvH4_5g33890 FvH4_5g33890 FvH4_5g33890
malus_domestica	MD01G1044900.v1.1 MD08G1208800.v1.1 MD08G1209100.v1.1
prunus_persica	Prupe.1G539900_v2.0.a1 Prupe.6G209600_v2.0.a1
pyrus_communis	pycom08g18020
rosa_chinensis	RchiOBHm_Chr2g0109991 RchiOBHm_Chr7g0233251 RchiOBHm_Chr7g0233261
rosa_laevigata	RLG00000001282 RLG00000017776
rosa_multiflora	Rmu_co8210630.1_g000001 Rmu_sc0004650.1_g000001 Rmu_sc0008314.1_g000009 Rmu_sc0035251.1_g000001 Rmu_sc0035252.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133800
rosa_rugosa	Rorug02G0165000 Rorug07G0279600
rosa_samantha	Rh2AG216500 Rh2BG226400 Rh2CG218700 Rh2DG222100 Rh7AG435600 Rh7AG435700 Rh7BG408000 Rh7CG454700 Rh7CG454800 Rh7DG423900
rosa_wichuraiana	Rw2G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	1 cut(s)	892
AcsI	RAATTY	3 cut(s)	378, 466, 868
AcuI	CTGAAG	2 cut(s)	51, 437
AfaI	GTAC	4 cut(s)	143, 161, 945, 961
AfiI	CCNNNNNNNGG	3 cut(s)	156, 525, 654
AflIII	ACRYGT	2 cut(s)	962, 1028
AgeI	ACCGGT	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	345, 701, 731, 795, 1010
AjiI	CACGTC	1 cut(s)	965
AjnI	CCWGG	2 cut(s)	318, 647
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	6 cut(s)	74, 85, 451, 493, 1023, 1057
AluI	AGCT	6 cut(s)	74, 85, 451, 493, 1023, 1057
Alw26I	GTCTC	3 cut(s)	51, 527, 613
AlwI	GGATC	1 cut(s)	892
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	147, 1044
ApeKI	GCWGC	6 cut(s)	68, 71, 82, 85, 448, 597
ApoI	RAATTY	3 cut(s)	378, 466, 868
AsiGI	ACCGGT	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	218, 811
AsuC2I	CCSGG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	218, 811
BbvI	GCAGC	6 cut(s)	55, 72, 83, 94, 460, 609
BccI	CCATC	3 cut(s)	806, 856, 902
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	320, 649
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	51, 527, 613
BfaI	CTAG	4 cut(s)	20, 224, 494, 806
BfmI	CTRYAG	3 cut(s)	69, 307, 873
BisI	GCNGC	6 cut(s)	69, 72, 83, 86, 449, 598
BlsI	GCNGC	6 cut(s)	70, 73, 84, 87, 450, 599
Bme1390I	CCNGG	3 cut(s)	275, 320, 649
Bme18I	GGWCC	2 cut(s)	218, 811
BmgBI	CACGTC	1 cut(s)	965
BmgT120I	GGNCC	2 cut(s)	218, 811
BmrFI	CCNGG	3 cut(s)	275, 320, 649
BmsI	GCATC	3 cut(s)	127, 435, 1074
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	2 cut(s)	51, 527
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 525, 654
Bse118I	RCCGGY	2 cut(s)	114, 156
Bse1I	ACTGG	3 cut(s)	581, 718, 824
Bse3DI	GCAATG	2 cut(s)	530, 903
BseBI	CCWGG	2 cut(s)	320, 649
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	894, 1065
BseLI	CCNNNNNNNGG	3 cut(s)	156, 525, 654
BseMI	GCAATG	2 cut(s)	530, 903
BseMII	CTCAG	4 cut(s)	218, 362, 501, 832
BseNI	ACTGG	3 cut(s)	581, 718, 824
BseRI	GAGGAG	2 cut(s)	387, 806
BseXI	GCAGC	6 cut(s)	55, 72, 83, 94, 460, 609
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	2 cut(s)	149, 1046
BshTI	ACCGGT	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	115, 157, 275
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	156, 525, 654
BsmAI	GTCTC	3 cut(s)	51, 527, 613
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	149, 1046
Bso31I	GGTCTC	2 cut(s)	51, 527
Bsp1407I	TGTACA	2 cut(s)	141, 959
Bsp143I	GATC	2 cut(s)	106, 884
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	149, 1046
BspCNI	CTCAG	4 cut(s)	217, 361, 502, 831
BspHI	TCATGA	1 cut(s)	400
BspMAI	CTGCAG	2 cut(s)	73, 877
BspPI	GGATC	1 cut(s)	892
BspTNI	GGTCTC	2 cut(s)	51, 527
BsrDI	GCAATG	2 cut(s)	530, 903
BsrFI	RCCGGY	2 cut(s)	114, 156
BsrGI	TGTACA	2 cut(s)	141, 959
BsrI	ACTGG	3 cut(s)	581, 718, 824
BssAI	RCCGGY	2 cut(s)	114, 156
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	106, 884
BssNAI	GTATAC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	480
Bst1107I	GTATAC	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	320, 649
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstAUI	TGTACA	2 cut(s)	141, 959
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	4 cut(s)	204, 348, 510, 818
BstF5I	GGATG	2 cut(s)	894, 1065
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	109, 887
BstMAI	GTCTC	3 cut(s)	51, 527, 613
BstMBI	GATC	2 cut(s)	106, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 872
BstNI	CCWGG	2 cut(s)	320, 649
BstNSI	RCATGY	2 cut(s)	197, 1032
BstSCI	CCNGG	3 cut(s)	273, 318, 647
BstSFI	CTRYAG	3 cut(s)	69, 307, 873
BstV1I	GCAGC	6 cut(s)	55, 72, 83, 94, 460, 609
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	149, 1046
BtrI	CACGTC	1 cut(s)	965
BtsCI	GGATG	2 cut(s)	894, 1065
Cac8I	GCNNGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	2 cut(s)	114, 156
Cfr13I	GGNCC	2 cut(s)	218, 811
Csp6I	GTAC	4 cut(s)	142, 160, 944, 960
CspAI	ACCGGT	1 cut(s)	156
CviAII	CATG	4 cut(s)	194, 401, 952, 1029
CviQI	GTAC	4 cut(s)	142, 160, 944, 960
DdeI	CTNAG	4 cut(s)	204, 348, 510, 818
DpnI	GATC	2 cut(s)	108, 886
DpnII	GATC	2 cut(s)	106, 884
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	2 cut(s)	51, 527
Eco47I	GGWCC	2 cut(s)	218, 811
Eco57I	CTGAAG	2 cut(s)	51, 437
EcoO109I	RGGNCCY	2 cut(s)	218, 811
EcoRII	CCWGG	2 cut(s)	318, 647
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	4 cut(s)	197, 404, 955, 1032
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	193, 400, 951, 1028
FauNDI	CATATG	3 cut(s)	409, 720, 940
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	6 cut(s)	69, 72, 83, 86, 449, 598
FokI	GGATG	2 cut(s)	881, 1052
Fsp4HI	GCNGC	6 cut(s)	69, 72, 83, 86, 449, 598
FspBI	CTAG	4 cut(s)	20, 224, 494, 806
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	6 cut(s)	69, 72, 83, 86, 449, 598
HaeIII	GGCC	2 cut(s)	149, 1046
HapII	CCGG	3 cut(s)	115, 157, 275
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	197, 404, 955, 1032
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	4 cut(s)	200, 315, 674, 772
HpaII	CCGG	3 cut(s)	115, 157, 275
Hpy166II	GTNNAC	2 cut(s)	437, 962
Hpy188I	TCNGA	8 cut(s)	31, 214, 351, 456, 472, 511, 673, 679
Hpy188III	TCNNGA	4 cut(s)	236, 401, 806, 999
Hpy8I	GTNNAC	2 cut(s)	437, 962
HpyAV	CCTTC	3 cut(s)	209, 648, 996
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	8 cut(s)	71, 88, 299, 360, 448, 838, 875, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 872
HpyF3I	CTNAG	4 cut(s)	204, 348, 510, 818
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	4 cut(s)	197, 404, 955, 1032
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	106, 884
Lsp1109I	GCAGC	6 cut(s)	55, 72, 83, 94, 460, 609
LweI	GCATC	3 cut(s)	127, 435, 1074
MaeI	CTAG	4 cut(s)	20, 224, 494, 806
MaeII	ACGT	1 cut(s)	964
MalI	GATC	2 cut(s)	108, 886
MboI	GATC	2 cut(s)	106, 884
MboII	GAAGA	7 cut(s)	52, 333, 386, 542, 660, 738, 741
MluCI	AATT	4 cut(s)	89, 378, 466, 868
MlyI	GAGTC	1 cut(s)	766
MmeI	TCCRAC	1 cut(s)	862
MseI	TTAA	3 cut(s)	153, 642, 785
MslI	CAYNNNNRTG	2 cut(s)	123, 1070
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	3 cut(s)	115, 157, 275
MspR9I	CCNGG	3 cut(s)	275, 320, 649
MvaI	CCWGG	2 cut(s)	320, 649
MwoI	GCNNNNNNNGC	2 cut(s)	194, 872
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	3 cut(s)	409, 720, 940
NdeII	GATC	2 cut(s)	106, 884
NlaIII	CATG	4 cut(s)	197, 404, 955, 1032
NmeAIII	GCCGAG	1 cut(s)	80
NspI	RCATGY	2 cut(s)	197, 1032
PagI	TCATGA	1 cut(s)	400
PciI	ACATGT	1 cut(s)	1028
PfeI	GAWTC	3 cut(s)	200, 315, 674
PflMI	CCANNNNNTGG	1 cut(s)	525
PfoI	TCCNGGA	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	156
PkrI	GCNGC	6 cut(s)	70, 73, 84, 87, 450, 599
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PpuMI	RGGWCCY	2 cut(s)	218, 811
PscI	ACATGT	1 cut(s)	1028
Psp5II	RGGWCCY	2 cut(s)	218, 811
Psp6I	CCWGG	2 cut(s)	318, 647
PspGI	CCWGG	2 cut(s)	318, 647
PspPI	GGNCC	2 cut(s)	218, 811
PspPPI	RGGWCCY	2 cut(s)	218, 811
PstI	CTGCAG	2 cut(s)	73, 877
PstNI	CAGNNNCTG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	4 cut(s)	143, 161, 945, 961
RsaNI	GTAC	4 cut(s)	142, 160, 944, 960
RseI	CAYNNNNRTG	2 cut(s)	123, 1070
SaqAI	TTAA	3 cut(s)	153, 642, 785
SatI	GCNGC	6 cut(s)	69, 72, 83, 86, 449, 598
Sau3AI	GATC	2 cut(s)	106, 884
Sau96I	GGNCC	2 cut(s)	218, 811
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	3 cut(s)	275, 320, 649
SfaNI	GCATC	3 cut(s)	127, 435, 1074
SfcI	CTRYAG	3 cut(s)	69, 307, 873
SinI	GGWCC	2 cut(s)	218, 811
SmiMI	CAYNNNNRTG	2 cut(s)	123, 1070
Sse9I	AATT	4 cut(s)	89, 378, 466, 868
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	1 cut(s)	167
SspMI	CTAG	4 cut(s)	20, 224, 494, 806
StyD4I	CCNGG	3 cut(s)	273, 318, 647
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	925
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	3 cut(s)	109, 417, 752
TasI	AATT	4 cut(s)	89, 378, 466, 868
TatI	WGTACW	3 cut(s)	141, 943, 959
TfiI	GAWTC	3 cut(s)	200, 315, 674
Tru1I	TTAA	3 cut(s)	153, 642, 785
Tru9I	TTAA	3 cut(s)	153, 642, 785
TseI	GCWGC	6 cut(s)	68, 71, 82, 85, 448, 597
TspDTI	ATGAA	2 cut(s)	426, 437
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	218, 811
XapI	RAATTY	3 cut(s)	378, 466, 868
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	2 cut(s)	197, 1032
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	4 cut(s)	20, 224, 494, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.