Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008314.1

Orthogroup ID

OG0002521

Physical Location & Seq

Genomic Coordinates Forward (+)

32717 .. 34518

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008314.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggagatgaagcaacaagtagagtgggctgaagctcagaagattgtgctaagcaaagaccttgtggctgcagccaaacaacagctgcaatttctagcagtcgttgatcgaaatcggcaactctatgaaggccctgctttgtacacggccatttattacaggcagttttctattaagcgcttttgtgttccgacttatgacattgacctcatctggcattgtcaccaactgcatcctgctgcttactgcaaagatcttaaggcaataataggcaaggtgttagagcatgatgacacagattctgaccgaaccaagggtaacaagctagatgttgggttttcagagaccaccaaacaatgggaagaaacatttggttcaaggtactggagagttgaagcaatgtaccgaggcagtactcaatcttcccttaccatcaatctcagccaactagaaatagcgagaaagaaagttatgctggaagtagttgcggtgagaaacttaccaaccgagcataaaggcagcctctttgtctctcttagtaagaaacagccagactttttcttcagtaccaggagaacaattgacatttcttctgactcagaggagaaagaggtttctgtttttcaaagccaacctaccggagagcttctattcgaacttatgtcacattcctcttcaatactgcccatatcaaagtctcctatactactgggaacttctgaaattactctagacaacctcttcaacccactttctacactgcaagtgaagaagtggttagagctcatgccaaattccggtttcctggttttgaatcccatcagcctatgcatcgctctctcttggaccactccaattccatcactatacatactgcaaattccttctcgaagcctagtttcttttcactctctggaaggtttcaaaatgctaaacactggtcatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

316

Amino Acids

35.98

Weight (kDa)

7.09

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22660 AT2G22660 AT2G22660 AT4G37900 AT4G37900
fragaria_vesca	FvH4_1g18970 FvH4_1g18970 FvH4_1g18970 FvH4_5g33890 FvH4_5g33890 FvH4_5g33890
malus_domestica	MD01G1044900.v1.1 MD08G1208800.v1.1 MD08G1209100.v1.1
prunus_persica	Prupe.1G539900_v2.0.a1 Prupe.6G209600_v2.0.a1
pyrus_communis	pycom08g18020
rosa_chinensis	RchiOBHm_Chr2g0109991 RchiOBHm_Chr7g0233251 RchiOBHm_Chr7g0233261
rosa_laevigata	RLG00000001282 RLG00000017776
rosa_multiflora	Rmu_co8210630.1_g000001 Rmu_sc0004650.1_g000001 Rmu_sc0008314.1_g000009 Rmu_sc0035251.1_g000001 Rmu_sc0035252.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133800
rosa_rugosa	Rorug02G0165000 Rorug07G0279600
rosa_samantha	Rh2AG216500 Rh2BG226400 Rh2CG218700 Rh2DG222100 Rh7AG435600 Rh7AG435700 Rh7BG408000 Rh7CG454700 Rh7CG454800 Rh7DG423900
rosa_wichuraiana	Rw2G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	357
AciI	CCGC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	793, 879
AcuI	CTGAAG	2 cut(s)	51, 547
AfaI	GTAC	5 cut(s)	143, 383, 404, 415, 568
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	313, 357, 797
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	7 cut(s)	378, 395, 626, 678, 745, 814, 925
AjnI	CCWGG	2 cut(s)	569, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	5 cut(s)	35, 85, 325, 646, 784
AluI	AGCT	5 cut(s)	35, 85, 325, 646, 784
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	3 cut(s)	338, 535, 702
AlwNI	CAGNNNCTG	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	2 cut(s)	130, 147
ApeKI	GCWGC	5 cut(s)	68, 71, 85, 239, 519
ApoI	RAATTY	2 cut(s)	793, 879
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	131, 846
AsuHPI	GGTGA	2 cut(s)	215, 502
AsuII	TTCGAA	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	786
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	5 cut(s)	55, 72, 83, 226, 531
BccI	CCATC	3 cut(s)	440, 827, 868
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	571, 806
BcoDI	GTCTC	3 cut(s)	338, 535, 702
BfaI	CTAG	5 cut(s)	95, 326, 449, 731, 896
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	5 cut(s)	69, 72, 86, 240, 520
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	5 cut(s)	70, 73, 87, 241, 521
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	571, 806
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	2 cut(s)	131, 846
BmrFI	CCNGG	2 cut(s)	571, 806
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	2 cut(s)	241, 840
BmuI	ACTGGG	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	406
Bpu1102I	GCTNAGC	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	312, 406
BsaWI	WCCGGW	2 cut(s)	638, 797
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 357, 797
Bse1I	ACTGG	3 cut(s)	389, 714, 943
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	571, 806
BseDI	CCNNGG	2 cut(s)	312, 406
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	313, 357, 797
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	3 cut(s)	50, 454, 612
BseNI	ACTGG	3 cut(s)	389, 714, 943
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	5 cut(s)	55, 72, 83, 226, 531
BshFI	GGCC	2 cut(s)	132, 149
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	639, 798
BslI	CCNNNNNNNGG	3 cut(s)	313, 357, 797
BsmAI	GTCTC	3 cut(s)	338, 535, 702
BsnI	GGCC	2 cut(s)	132, 149
Bso31I	GGTCTC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	106, 253
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	2 cut(s)	132, 149
BspCNI	CTCAG	3 cut(s)	49, 453, 611
BspMAI	CTGCAG	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	654
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	389, 714, 943
BssECI	CCNNGG	2 cut(s)	312, 406
BssMI	GATC	2 cut(s)	106, 253
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	571, 806
Bst6I	CTCTTC	2 cut(s)	679, 746
BstAFI	CTTAAG	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	654
BstDEI	CTNAG	5 cut(s)	36, 50, 440, 536, 598
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	109, 256
BstMAI	GTCTC	3 cut(s)	338, 535, 702
BstMBI	GATC	2 cut(s)	106, 253
BstNI	CCWGG	2 cut(s)	571, 806
BstSCI	CCNGG	2 cut(s)	569, 804
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	5 cut(s)	55, 72, 83, 226, 531
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	132, 149
BtgZI	GCGATG	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	2 cut(s)	758, 936
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	131, 846
Csp6I	GTAC	5 cut(s)	142, 382, 403, 414, 567
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	3 cut(s)	287, 787, 944
CviQI	GTAC	5 cut(s)	142, 382, 403, 414, 567
DdeI	CTNAG	5 cut(s)	36, 50, 440, 536, 598
DpnI	GATC	2 cut(s)	108, 255
DpnII	GATC	2 cut(s)	106, 253
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	679, 746
EarI	CTCTTC	2 cut(s)	679, 746
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	846
Eco47III	AGCGCT	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	2 cut(s)	51, 547
EcoICRI	GAGCTC	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	569, 804
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	833
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	290, 790, 947
FatI	CATG	3 cut(s)	286, 786, 943
Fnu4HI	GCNGC	5 cut(s)	69, 72, 86, 240, 520
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	5 cut(s)	69, 72, 86, 240, 520
FspBI	CTAG	5 cut(s)	95, 326, 449, 731, 896
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	69, 72, 86, 240, 520
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	132, 149
HapII	CCGG	2 cut(s)	639, 798
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	290, 790, 947
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	299, 596, 814
HpaII	CCGG	2 cut(s)	639, 798
HphI	GGTGA	2 cut(s)	215, 502
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	7 cut(s)	39, 192, 304, 343, 595, 601, 721
Hpy188III	TCNNGA	3 cut(s)	731, 888, 914
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	122, 894, 911
HpyCH4V	TGCA	7 cut(s)	71, 88, 232, 249, 763, 831, 877
HpyF3I	CTNAG	5 cut(s)	36, 50, 440, 536, 598
Hsp92II	CATG	3 cut(s)	290, 790, 947
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	106, 253
Lsp1109I	GCAGC	5 cut(s)	55, 72, 83, 226, 531
LweI	GCATC	2 cut(s)	241, 840
MaeI	CTAG	5 cut(s)	95, 326, 449, 731, 896
MaeIII	GTNAC	3 cut(s)	221, 317, 663
MalI	GATC	2 cut(s)	108, 255
MboI	GATC	2 cut(s)	106, 253
MboII	GAAGA	8 cut(s)	52, 374, 414, 553, 582, 666, 733, 781
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	6 cut(s)	89, 579, 723, 793, 855, 879
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	218, 401, 533, 595, 604, 682, 749
Mph1103I	ATGCAT	1 cut(s)	833
MseI	TTAA	2 cut(s)	174, 258
MspA1I	CMGCKG	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	2 cut(s)	639, 798
MspR9I	CCNGG	2 cut(s)	571, 806
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	571, 806
NdeII	GATC	2 cut(s)	106, 253
NlaIII	CATG	3 cut(s)	290, 790, 947
NmuCI	GTSAC	2 cut(s)	221, 663
NsiI	ATGCAT	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	299, 814
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	5 cut(s)	70, 73, 87, 241, 521
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	786
Psp6I	CCWGG	2 cut(s)	569, 804
PspGI	CCWGG	2 cut(s)	569, 804
PspPI	GGNCC	2 cut(s)	131, 846
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	5 cut(s)	143, 383, 404, 415, 568
RsaNI	GTAC	5 cut(s)	142, 382, 403, 414, 567
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	2 cut(s)	174, 258
SatI	GCNGC	5 cut(s)	69, 72, 86, 240, 520
Sau3AI	GATC	2 cut(s)	106, 253
Sau96I	GGNCC	2 cut(s)	131, 846
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	571, 806
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	241, 840
SfcI	CTRYAG	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	654
SinI	GGWCC	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	89, 579, 723, 793, 855, 879
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	5 cut(s)	95, 326, 449, 731, 896
SstI	GAGCTC	1 cut(s)	786
StyD4I	CCNGG	2 cut(s)	569, 804
StyI	CCWWGG	1 cut(s)	312
TaqI	TCGA	3 cut(s)	109, 654, 889
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	6 cut(s)	89, 579, 723, 793, 855, 879
TatI	WGTACW	2 cut(s)	141, 413
TfiI	GAWTC	2 cut(s)	299, 814
Tru1I	TTAA	2 cut(s)	174, 258
Tru9I	TTAA	2 cut(s)	174, 258
TscAI	CASTG	2 cut(s)	765, 943
TseFI	GTSAC	2 cut(s)	221, 663
TseI	GCWGC	5 cut(s)	68, 71, 85, 239, 519
Tsp45I	GTSAC	2 cut(s)	221, 663
TspDTI	ATGAA	2 cut(s)	23, 141
TspRI	CASTG	2 cut(s)	765, 943
Van91I	CCANNNNNTGG	1 cut(s)	357
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	846
XapI	RAATTY	2 cut(s)	793, 879
XbaI	TCTAGA	1 cut(s)	730
XspI	CTAG	5 cut(s)	95, 326, 449, 731, 896
ZrmI	AGTACT	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.