RchiOBHm_Chr7g0233261

Glycine-rich domain-containing protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002521
Physical Location & Seq
Reverse (-)
57671916 .. 57672982
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20907

Sequence Viewer

Length: 657 bp
ATGGAGATGAAGCAAAAAGTAGAGTGGGCTGAAGCTCAGAAGATTGTGCTAAGCAAAGACCTTGTGCTGCAGCCAAACAACAGCTGCAATTTCTGGCAGTTGTTGATCGAAATCGGCAACTCTATGAAGGCCCTGCTTGGTACAAGGCCATTTACAGAAACTCCTCTAGTTGTGCCTCTTGATTGTGAATGGATTTGGCACTGTCATAGGCTCAATCCGGTGTGTTATGTAACTGATTGTGAAACTCTCTACGGGAAAATCCTTGACAACCAGAATGTTGGATCCTCCATTTGGGGAACTTACACAAAGAAAACTGAACAAATCTGGAACAAATTATATCCCCATGAGCCATATGAACTTCAAAGCAACAGCTTCTTCTCAGATGACGCTGCTATAAATCTTCACAGAGTTTCAGAAAGAACCAAGTATGATCTAGTTTCGATCAGCTGTCAAAAGGCAAATTCTTTTCTTCTATCAGCTGTGGCCAGATACAAAGGGTTTCTGCTTTTGATCAAGAGAAACAGGCAGTTGTCTGTTAAGCGCTTTTGTGTTCCTACTTATGACATTGACCTCATCTGGCATTGTCACCAATTGCATCCTGCTGCTTACTGCAAAGATCTTAACGCCCATAATAGGCAAGGTGTTAGAGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRDP-like

Protein Analysis

218

Amino Acids

25.42

Weight (kDa)

8.53

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP-like PF07173 76 - 206 6.1e-35 Glycine-rich domain-containing protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 276, 289
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 142
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 2 cut(s) 291, 633
AgsI TTSAA 1 cut(s) 362
AluBI AGCT 5 cut(s) 35, 84, 372, 447, 479
AluI AGCT 5 cut(s) 35, 84, 372, 447, 479
AlwI GGATC 2 cut(s) 276, 289
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 3 cut(s) 129, 146, 483
ApeKI GCWGC 5 cut(s) 67, 70, 84, 389, 602
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 578
BalI TGGCCA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 281
BbvI GCAGC 5 cut(s) 54, 71, 82, 376, 589
BclI TGATCA 1 cut(s) 510
BfaI CTAG 2 cut(s) 167, 434
BfmI CTRYAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 544
BglII AGATCT 1 cut(s) 616
BisI GCNGC 5 cut(s) 68, 71, 85, 390, 603
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 5 cut(s) 69, 72, 86, 391, 604
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 1 cut(s) 604
Bpu1102I GCTNAGC 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 633
Bse8I GATNNNNATC 1 cut(s) 110
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 291, 633
BseMII CTCAG 2 cut(s) 50, 393
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 5 cut(s) 54, 71, 82, 376, 589
BshFI GGCC 3 cut(s) 131, 148, 485
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 291, 633
BsnI GGCC 3 cut(s) 131, 148, 485
Bsp143I GATC 6 cut(s) 105, 281, 430, 441, 510, 616
Bsp1720I GCTNAGC 1 cut(s) 50
BspANI GGCC 3 cut(s) 131, 148, 485
BspCNI CTCAG 2 cut(s) 49, 392
BspLI GGNNCC 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 2 cut(s) 276, 289
BssMI GATC 6 cut(s) 105, 281, 430, 441, 510, 616
Bst4CI ACNGT 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 36, 50, 379
BstF5I GGATG 1 cut(s) 595
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 6 cut(s) 108, 284, 433, 444, 513, 619
BstMBI GATC 6 cut(s) 105, 281, 430, 441, 510, 616
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 54, 71, 82, 376, 589
BstX2I RGATCY 2 cut(s) 281, 616
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 2 cut(s) 281, 616
BsuRI GGCC 3 cut(s) 131, 148, 485
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 344, 651
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 36, 50, 379
DpnI GATC 6 cut(s) 107, 283, 432, 443, 512, 618
DpnII GATC 6 cut(s) 105, 281, 430, 441, 510, 616
EaeI YGGCCR 1 cut(s) 483
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 130
FaeI CATG 2 cut(s) 347, 654
FatI CATG 2 cut(s) 343, 650
FauNDI CATATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 5 cut(s) 68, 71, 85, 390, 603
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 68, 71, 85, 390, 603
FspBI CTAG 2 cut(s) 167, 434
GlaI GCGC 1 cut(s) 542
GluI GCNGC 5 cut(s) 68, 71, 85, 390, 603
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 3 cut(s) 131, 148, 485
HapII CCGG 1 cut(s) 218
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 543
Hin1II CATG 2 cut(s) 347, 654
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 578
Hpy188I TCNGA 3 cut(s) 39, 382, 415
Hpy188III TCNNGA 3 cut(s) 179, 325, 514
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 70, 87, 595, 612
HpyF3I CTNAG 3 cut(s) 36, 50, 379
Hsp92II CATG 2 cut(s) 347, 654
HspAI GCGC 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 6 cut(s) 105, 281, 430, 441, 510, 616
LpnPI CCDG 9 cut(s) 79, 146, 231, 284, 310, 499, 508, 562, 612
Lsp1109I GCAGC 5 cut(s) 54, 71, 82, 376, 589
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 167, 434
MaeIII GTNAC 2 cut(s) 229, 584
MalI GATC 6 cut(s) 107, 283, 432, 443, 512, 618
MboI GATC 6 cut(s) 105, 281, 430, 441, 510, 616
MboII GAAGA 4 cut(s) 52, 367, 392, 461
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 2 cut(s) 281, 616
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 4 cut(s) 88, 332, 460, 590
MluNI TGGCCA 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 4 cut(s) 174, 186, 295, 581
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MseI TTAA 2 cut(s) 537, 621
Msp20I TGGCCA 1 cut(s) 485
MspA1I CMGCKG 3 cut(s) 84, 447, 479
MspI CCGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 590
NdeI CATATG 1 cut(s) 352
NdeII GATC 6 cut(s) 105, 281, 430, 441, 510, 616
NlaIII CATG 2 cut(s) 347, 654
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 584
PkrI GCNGC 5 cut(s) 69, 72, 86, 391, 604
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 130
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 2 cut(s) 281, 616
PvuII CAGCTG 3 cut(s) 84, 447, 479
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 537, 621
SatI GCNGC 5 cut(s) 68, 71, 85, 390, 603
Sau3AI GATC 6 cut(s) 105, 281, 430, 441, 510, 616
Sau96I GGNCC 1 cut(s) 130
SetI ASST 8 cut(s) 37, 63, 86, 374, 449, 481, 573, 643
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 68
Sse9I AATT 4 cut(s) 88, 332, 460, 590
SspMI CTAG 2 cut(s) 167, 434
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 108, 440
TasI AATT 4 cut(s) 88, 332, 460, 590
Tru1I TTAA 2 cut(s) 537, 621
Tru9I TTAA 2 cut(s) 537, 621
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 5 cut(s) 67, 70, 84, 389, 602
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 3 cut(s) 23, 140, 369
TspRI CASTG 1 cut(s) 206
XapI RAATTY 1 cut(s) 460
XspI CTAG 2 cut(s) 167, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.