Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210630.1

Orthogroup ID

OG0002521

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 596

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210630.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

gtagctgtggccagatataaagggtttctgcatttgatcaagagaaacaggcagttttctattaagcgcttttgtgttccgacttatgacattgacctcatctggcattgtcaccaactgcatcctgctgcttactgcaaagatcttaaggcaataataggcaaggtgttagagcatgatgacacagattctgaccgaaccaagggtaacaagctagatgttgggttttcagagaccaccaaacaatgggaagaaacatttggttcaaggtactggagagttgaagcaatgtaccgaggcagtactcaatcttcccttaccatcaatctcagccaactagaaatagcgagaaagaaagtagttgtaccagctgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRDP-like

Protein Analysis

125

Amino Acids

14.5

Weight (kDa)

9.2

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22660 AT2G22660 AT2G22660 AT4G37900 AT4G37900
fragaria_vesca	FvH4_1g18970 FvH4_1g18970 FvH4_1g18970 FvH4_5g33890 FvH4_5g33890 FvH4_5g33890
malus_domestica	MD01G1044900.v1.1 MD08G1208800.v1.1 MD08G1209100.v1.1
prunus_persica	Prupe.1G539900_v2.0.a1 Prupe.6G209600_v2.0.a1
pyrus_communis	pycom08g18020
rosa_chinensis	RchiOBHm_Chr2g0109991 RchiOBHm_Chr7g0233251 RchiOBHm_Chr7g0233261
rosa_laevigata	RLG00000001282 RLG00000017776
rosa_multiflora	Rmu_co8210630.1_g000001 Rmu_sc0004650.1_g000001 Rmu_sc0008314.1_g000009 Rmu_sc0035251.1_g000001 Rmu_sc0035252.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133800
rosa_rugosa	Rorug02G0165000 Rorug07G0279600
rosa_samantha	Rh2AG216500 Rh2BG226400 Rh2CG218700 Rh2DG222100 Rh7AG435600 Rh7AG435700 Rh7BG408000 Rh7CG454700 Rh7CG454800 Rh7DG423900
rosa_wichuraiana	Rw2G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	4 cut(s)	272, 293, 304, 366
AfeI	AGCGCT	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	202, 246
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	267, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	5, 214, 371
AluI	AGCT	3 cut(s)	5, 214, 371
Alw26I	GTCTC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	68
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	215, 338
BfoI	RGCGCY	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	146
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	304
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	201, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 246
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	201, 295
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	202, 246
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	202, 246
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	36, 142
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	201, 295
BssMI	GATC	2 cut(s)	36, 142
BssT1I	CCWWGG	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	39, 145
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	36, 142
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	271, 292, 303, 365
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	5 cut(s)	5, 11, 214, 333, 371
CviKI_1	RGCY	5 cut(s)	5, 11, 214, 333, 371
CviQI	GTAC	4 cut(s)	271, 292, 303, 365
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	2 cut(s)	38, 144
DpnII	GATC	2 cut(s)	36, 142
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	227
Eco47III	AGCGCT	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	18, 87, 177
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	215, 338
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	81, 193, 232
Hpy188III	TCNNGA	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	31, 121, 138
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 142
LpnPI	CCDG	5 cut(s)	25, 34, 88, 138, 259
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	215, 338
MaeIII	GTNAC	2 cut(s)	110, 206
MalI	GATC	2 cut(s)	38, 144
MboI	GATC	2 cut(s)	36, 142
MboII	GAAGA	2 cut(s)	263, 303
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	107, 290
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	2 cut(s)	63, 147
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	146
NdeII	GATC	2 cut(s)	36, 142
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	4 cut(s)	272, 293, 304, 366
RsaNI	GTAC	4 cut(s)	271, 292, 303, 365
SaqAI	TTAA	2 cut(s)	63, 147
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	36, 142
ScaI	AGTACT	1 cut(s)	304
SetI	ASST	6 cut(s)	7, 99, 168, 216, 272, 373
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SspMI	CTAG	2 cut(s)	215, 338
StyI	CCWWGG	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	210
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	63, 147
Tru9I	TTAA	2 cut(s)	63, 147
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	146
XspI	CTAG	2 cut(s)	215, 338
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.