Rh7AG435700

Glycine-rich domain-containing protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
58669218 .. 58670282
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG435700.1

Sequence Viewer

Length: 756 bp
ATGGAGATGAAGCAACAAGTAGAGTGGGCTGAAGCTCAGAAGATTGTGCCAAGCAAAGACCTTGTGGCTGCAGCCAAACAACAGCTGCAATTTCTAGCGGTCGTTGATCGAAATCGGCAACTCTATGAAGGCCCTGCTTTGTACAAGGCCATTTATCACAGGTACAAATATTGTTGGCTTCCCTTGCTTGCCAAACATACTGAATCTGAAGTTACAGAAACTCCTCTAGTTGTGCCTCTTGATTGTGAATGGATTTGGCACTGTCATAGGCTCAATCCGGTGTGTTATGTAACTGATTGTGAAACTCTCTACGGGAGAATCCTCGACAACCAAAATGTTGTATCCTCCATTCGGGGAACTTACACAAAGAAAACTGAACAAATCTGGAACAAATTATATCCCCATGAGCCATATGAACTTCAAAACAACAGCTTCTTCTCAGATGACGCTGCTATAAATCTTCAGAGAGTTTCAGAAAGCACCAAGTATGATCTAGTTTCAACTGTCAAAAGGCAAATTCTTTTCTTCTATCAGGTATCCGGAGCTTGTGTGAAAGACGACCTTTTCCTCAAGGAAGCTGTGGCCAGATACAAAGGGCTTCTGCATTTGATCAAGAGAAACAGGCAGTTGTCTGTTAAGCGCTTTTGTGTTCCTACTTATGACATTGACCTCATCTGGCATTGTCACCAACTGCATCCTGCTGCTTACTGCAAAGATCTTAAGGCCCATAATAGGCAAGGTGTTAGAGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

251

Amino Acids

29.52

Weight (kDa)

8.75

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP-like PF07173 15 - 99 8.9e-09 Glycine-rich domain-containing protein-like
GRDP-like PF07173 96 - 239 5.3e-49 Glycine-rich domain-containing protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 539
AciI CCGC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 3 cut(s) 51, 228, 446
AfaI GTAC 2 cut(s) 143, 164
AfeI AGCGCT 1 cut(s) 641
AfiI CCNNNNNNNGG 2 cut(s) 351, 732
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 2 cut(s) 422, 501
AluBI AGCT 5 cut(s) 35, 85, 432, 545, 578
AluI AGCT 5 cut(s) 35, 85, 432, 545, 578
Aor13HI TCCGGA 1 cut(s) 539
Aor51HI AGCGCT 1 cut(s) 641
AoxI GGCC 4 cut(s) 130, 147, 582, 723
ApeKI GCWGC 5 cut(s) 68, 71, 85, 449, 701
ApoI RAATTY 1 cut(s) 516
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 2 cut(s) 131, 724
AsuHPI GGTGA 1 cut(s) 677
BalI TGGCCA 1 cut(s) 584
BbvI GCAGC 5 cut(s) 55, 72, 83, 436, 688
BciVI GTATCC 2 cut(s) 352, 547
BclI TGATCA 1 cut(s) 609
BfaI CTAG 3 cut(s) 95, 227, 494
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 643
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 2 cut(s) 352, 547
BglII AGATCT 1 cut(s) 715
BisI GCNGC 5 cut(s) 69, 72, 86, 450, 702
BlsI GCNGC 5 cut(s) 70, 73, 87, 451, 703
BmgT120I GGNCC 2 cut(s) 131, 724
BmsI GCATC 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 277, 539
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 534, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 732
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 539
BseGI GGATG 1 cut(s) 694
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 351, 732
BseMII CTCAG 2 cut(s) 50, 453
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 5 cut(s) 55, 72, 83, 436, 688
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 4 cut(s) 132, 149, 584, 725
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 278, 540
BslI CCNNNNNNNGG 2 cut(s) 351, 732
BsnI GGCC 4 cut(s) 132, 149, 584, 725
Bsp13I TCCGGA 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 106, 490, 609, 715
BspACI CCGC 1 cut(s) 98
BspANI GGCC 4 cut(s) 132, 149, 584, 725
BspCNI CTCAG 2 cut(s) 49, 452
BspEI TCCGGA 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 719
BsrGI TGTACA 1 cut(s) 141
BssMI GATC 4 cut(s) 106, 490, 609, 715
Bst4CI ACNGT 2 cut(s) 263, 505
BstAFI CTTAAG 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 36, 439
BstF5I GGATG 1 cut(s) 694
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 4 cut(s) 109, 493, 612, 718
BstMBI GATC 4 cut(s) 106, 490, 609, 715
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 5 cut(s) 55, 72, 83, 436, 688
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuI GTATCC 2 cut(s) 352, 547
BsuRI GGCC 4 cut(s) 132, 149, 584, 725
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 642
Cfr13I GGNCC 2 cut(s) 131, 724
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 142, 163
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 2 cut(s) 404, 750
CviQI GTAC 2 cut(s) 142, 163
DdeI CTNAG 2 cut(s) 36, 439
DpnI GATC 4 cut(s) 108, 492, 611, 717
DpnII GATC 4 cut(s) 106, 490, 609, 715
EaeI YGGCCR 1 cut(s) 582
Eco47III AGCGCT 1 cut(s) 641
Eco57I CTGAAG 3 cut(s) 51, 228, 446
EcoO109I RGGNCCY 1 cut(s) 131
FaeI CATG 2 cut(s) 407, 753
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FatI CATG 2 cut(s) 403, 749
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 5 cut(s) 69, 72, 86, 450, 702
FokI GGATG 1 cut(s) 681
Fsp4HI GCNGC 5 cut(s) 69, 72, 86, 450, 702
FspBI CTAG 3 cut(s) 95, 227, 494
GlaI GCGC 1 cut(s) 641
GluI GCNGC 5 cut(s) 69, 72, 86, 450, 702
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 4 cut(s) 132, 149, 584, 725
HapII CCGG 2 cut(s) 278, 540
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 642
Hin1II CATG 2 cut(s) 407, 753
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HinfI GANTC 2 cut(s) 203, 318
HpaII CCGG 2 cut(s) 278, 540
HphI GGTGA 1 cut(s) 677
Hpy188I TCNGA 5 cut(s) 39, 208, 442, 465, 475
Hpy188III TCNNGA 4 cut(s) 239, 385, 540, 613
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 263, 505
HpyCH4V TGCA 5 cut(s) 71, 88, 604, 694, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 36, 439
Hsp92II CATG 2 cut(s) 407, 753
HspAI GCGC 1 cut(s) 640
Kpn2I TCCGGA 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 4 cut(s) 106, 490, 609, 715
LmnI GCTCC 1 cut(s) 542
Lsp1109I GCAGC 5 cut(s) 55, 72, 83, 436, 688
LweI GCATC 1 cut(s) 703
MaeI CTAG 3 cut(s) 95, 227, 494
MaeIII GTNAC 3 cut(s) 211, 289, 683
MalI GATC 4 cut(s) 108, 492, 611, 717
MboI GATC 4 cut(s) 106, 490, 609, 715
MboII GAAGA 4 cut(s) 52, 427, 452, 517
MflI RGATCY 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 3 cut(s) 89, 392, 516
MluNI TGGCCA 1 cut(s) 584
MnlI CCTC 6 cut(s) 234, 246, 332, 355, 578, 680
Mox20I TGGCCA 1 cut(s) 584
MroI TCCGGA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 584
MseI TTAA 2 cut(s) 636, 720
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 85
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 2 cut(s) 278, 540
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeI CATATG 1 cut(s) 412
NdeII GATC 4 cut(s) 106, 490, 609, 715
NlaIII CATG 2 cut(s) 407, 753
NmuCI GTSAC 1 cut(s) 683
PfeI GAWTC 2 cut(s) 203, 318
PkrI GCNGC 5 cut(s) 70, 73, 87, 451, 703
PspPI GGNCC 2 cut(s) 131, 724
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 2 cut(s) 143, 164
RsaNI GTAC 2 cut(s) 142, 163
SaqAI TTAA 2 cut(s) 636, 720
SatI GCNGC 5 cut(s) 69, 72, 86, 450, 702
Sau3AI GATC 4 cut(s) 106, 490, 609, 715
Sau96I GGNCC 2 cut(s) 131, 724
SfaNI GCATC 1 cut(s) 703
SfcI CTRYAG 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 569, 719
SmoI CTYRAG 2 cut(s) 569, 719
Sse9I AATT 3 cut(s) 89, 392, 516
SsiI CCGC 1 cut(s) 98
SspI AATATT 1 cut(s) 170
SspMI CTAG 3 cut(s) 95, 227, 494
TaaI ACNGT 2 cut(s) 263, 505
TaqI TCGA 2 cut(s) 109, 324
TasI AATT 3 cut(s) 89, 392, 516
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 203, 318
Tru1I TTAA 2 cut(s) 636, 720
Tru9I TTAA 2 cut(s) 636, 720
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 5 cut(s) 68, 71, 85, 449, 701
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 3 cut(s) 23, 141, 429
TspRI CASTG 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 719
XapI RAATTY 1 cut(s) 516
XspI CTAG 3 cut(s) 95, 227, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.