Rh7CG454800

Glycine-rich domain-containing protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
59859983 .. 59860929
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG454800.1

Sequence Viewer

Length: 720 bp
ATGGAGATGAAGCAACAAGTAGAGTGGGCTGAAGCTCAGAAGATTGTGCCAAGCAAAGACCTTGTGGCTGCAGCCAAACAACAGCTGCAATTTCTAGCGGTCGTTGATCGAAATCGGCAACTCTATGAAGGCCCTGCTTTGTACAAGGCCATTTATCACAGGTACAAATATTGTTGGCTTCCCTTGCTTGCCAAACATACTGAATCTGAAGTTACAGAAACTCCTCTAGTTGTGCCTCTTGATTGTGAATGGATTTGGCACTGTCATAGGCTCAATCCGGTGTGTTATGTAACTGATTGTGAAACTCTCTACGGGAGAATCCTCGACAACCAAAATGTTGTATCCTCCATTCGGGGAACTTACACAAAGAAAACTGAACAAATCTGGAACAAATTATATCCCCATGAGCCATATGAACTTCAAAACAACAGCTTCTTCTCAGATGACGCTGCTATAAATCTTCAGAGAGTTTCAGAAAGCACCAAGTATGATCTAGTTTCAACTGTCAAAAGGCAAATTCTTTTCTTCTATCAGGTAAAAAAAATAGAGAAAATACCCTATGCTGCGGTTTCAAAGACCTTGTGTCTCATTCATAACATGTACAACAATACATCAGGTATCCGGAGCTTGTGTGAAAGACGACCTTTTCCTCAAGGAAGCTGTGGCCAGATACAAAGGGCTTCTGCATTTGATCAAGAGAAACAGGCAGTTTTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

239

Amino Acids

27.88

Weight (kDa)

8.49

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRDP-like PF07173 15 - 99 8e-09 Glycine-rich domain-containing protein-like
GRDP-like PF07173 96 - 181 6.9e-19 Glycine-rich domain-containing protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 621
AciI CCGC 2 cut(s) 98, 566
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 3 cut(s) 51, 228, 446
AfaI GTAC 3 cut(s) 143, 164, 602
AfiI CCNNNNNNNGG 1 cut(s) 351
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 3 cut(s) 422, 501, 573
AhdI GACNNNNNGTC 1 cut(s) 582
AluBI AGCT 5 cut(s) 35, 85, 432, 627, 660
AluI AGCT 5 cut(s) 35, 85, 432, 627, 660
Alw26I GTCTC 1 cut(s) 590
Aor13HI TCCGGA 1 cut(s) 621
AoxI GGCC 3 cut(s) 130, 147, 664
ApeKI GCWGC 5 cut(s) 68, 71, 85, 449, 563
ApoI RAATTY 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 666
BbvI GCAGC 5 cut(s) 55, 72, 83, 436, 550
BciVI GTATCC 2 cut(s) 352, 629
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 95, 227, 494
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 2 cut(s) 352, 629
BisI GCNGC 5 cut(s) 69, 72, 86, 450, 564
BlsI GCNGC 5 cut(s) 70, 73, 87, 451, 565
BmeRI GACNNNNNGTC 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 636
BsaBI GATNNNNATC 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 277, 621
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 621
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 50, 453
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 5 cut(s) 55, 72, 83, 436, 550
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 132, 149, 666
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 278, 622
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 590
BsnI GGCC 3 cut(s) 132, 149, 666
Bsp13I TCCGGA 1 cut(s) 621
Bsp1407I TGTACA 2 cut(s) 141, 600
Bsp143I GATC 3 cut(s) 106, 490, 691
BspACI CCGC 2 cut(s) 98, 566
BspANI GGCC 3 cut(s) 132, 149, 666
BspCNI CTCAG 2 cut(s) 49, 452
BspEI TCCGGA 1 cut(s) 621
BspMAI CTGCAG 1 cut(s) 73
BsrGI TGTACA 2 cut(s) 141, 600
BssMI GATC 3 cut(s) 106, 490, 691
Bst4CI ACNGT 2 cut(s) 263, 505
BstAUI TGTACA 2 cut(s) 141, 600
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 36, 439
BstKTI GATC 3 cut(s) 109, 493, 694
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 3 cut(s) 106, 490, 691
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 5 cut(s) 55, 72, 83, 436, 550
BsuI GTATCC 2 cut(s) 352, 629
BsuRI GGCC 3 cut(s) 132, 149, 666
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 142, 163, 601
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 2 cut(s) 404, 598
CviQI GTAC 3 cut(s) 142, 163, 601
DdeI CTNAG 2 cut(s) 36, 439
DpnI GATC 3 cut(s) 108, 492, 693
DpnII GATC 3 cut(s) 106, 490, 691
DriI GACNNNNNGTC 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 664
Eam1105I GACNNNNNGTC 1 cut(s) 582
Eco57I CTGAAG 3 cut(s) 51, 228, 446
EcoO109I RGGNCCY 1 cut(s) 131
FaeI CATG 2 cut(s) 407, 601
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FatI CATG 2 cut(s) 403, 597
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 69, 72, 86, 450, 564
Fsp4HI GCNGC 5 cut(s) 69, 72, 86, 450, 564
FspBI CTAG 3 cut(s) 95, 227, 494
GluI GCNGC 5 cut(s) 69, 72, 86, 450, 564
HaeIII GGCC 3 cut(s) 132, 149, 666
HapII CCGG 2 cut(s) 278, 622
HgaI GACGC 1 cut(s) 455
Hin1II CATG 2 cut(s) 407, 601
HinfI GANTC 2 cut(s) 203, 318
HpaII CCGG 2 cut(s) 278, 622
Hpy188I TCNGA 5 cut(s) 39, 208, 442, 465, 475
Hpy188III TCNNGA 4 cut(s) 239, 385, 622, 695
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 263, 505
HpyCH4V TGCA 3 cut(s) 71, 88, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 36, 439
Hsp92II CATG 2 cut(s) 407, 601
Kpn2I TCCGGA 1 cut(s) 621
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 3 cut(s) 106, 490, 691
LmnI GCTCC 1 cut(s) 624
LpnPI CCDG 9 cut(s) 145, 147, 291, 370, 518, 600, 635, 680, 689
Lsp1109I GCAGC 5 cut(s) 55, 72, 83, 436, 550
MaeI CTAG 3 cut(s) 95, 227, 494
MaeIII GTNAC 2 cut(s) 211, 289
MalI GATC 3 cut(s) 108, 492, 693
MboI GATC 3 cut(s) 106, 490, 691
MboII GAAGA 4 cut(s) 52, 427, 452, 517
MlsI TGGCCA 1 cut(s) 666
MluCI AATT 3 cut(s) 89, 392, 516
MluNI TGGCCA 1 cut(s) 666
MnlI CCTC 5 cut(s) 234, 246, 332, 355, 660
Mox20I TGGCCA 1 cut(s) 666
MroI TCCGGA 1 cut(s) 621
MscI TGGCCA 1 cut(s) 666
MseI TTAA 1 cut(s) 718
Msp20I TGGCCA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 2 cut(s) 278, 622
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 106, 490, 691
NlaIII CATG 2 cut(s) 407, 601
NspI RCATGY 1 cut(s) 601
PciI ACATGT 1 cut(s) 597
PfeI GAWTC 2 cut(s) 203, 318
PkrI GCNGC 5 cut(s) 70, 73, 87, 451, 565
PscI ACATGT 1 cut(s) 597
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 3 cut(s) 143, 164, 602
RsaNI GTAC 3 cut(s) 142, 163, 601
SaqAI TTAA 1 cut(s) 718
SatI GCNGC 5 cut(s) 69, 72, 86, 450, 564
Sau3AI GATC 3 cut(s) 106, 490, 691
Sau96I GGNCC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 3 cut(s) 89, 392, 516
SsiI CCGC 2 cut(s) 98, 566
SspI AATATT 1 cut(s) 170
SspMI CTAG 3 cut(s) 95, 227, 494
TaaI ACNGT 2 cut(s) 263, 505
TaqI TCGA 2 cut(s) 109, 324
TasI AATT 3 cut(s) 89, 392, 516
TatI WGTACW 2 cut(s) 141, 600
TfiI GAWTC 2 cut(s) 203, 318
Tru1I TTAA 1 cut(s) 718
Tru9I TTAA 1 cut(s) 718
TscAI CASTG 1 cut(s) 266
TseI GCWGC 5 cut(s) 68, 71, 85, 449, 563
TspDTI ATGAA 4 cut(s) 23, 141, 429, 581
TspRI CASTG 1 cut(s) 266
XapI RAATTY 1 cut(s) 516
XceI RCATGY 1 cut(s) 601
XspI CTAG 3 cut(s) 95, 227, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.