AT2G25230
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004738
Physical Location & Seq
Reverse (-)
10747211 .. 10748467
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25230.1

Sequence Viewer

Length: 705 bp
ATGAAAAAAAATTATCAAAAGAAGAATATAAAGGTGGTGAGCACAAGCAAATATTTGAAGAAAAGTGACATCGACAAAGTAAACTGGACAGAATCTGAGGACATAAAATTGAAAGAGATAATGGCGCTTGGACCCAAAAACAAATGGACAAAGGTCGCAAAAAAATTCGAAGGAAGAACAGGAAAACAATGCAGAGAGAGGTGGTATAACCATGCTCGTCCTAACATTAAGAAAACTGCTTGGAGTGAAGAAGAAGATCAAATTTTGATTGAAGCACACAAAGTACTTGGTACCAAATGGGTCGAGATCGCACAGCAACTTCCGGGGAGGAGCGATAACAATATTAAGAACCATTGGAACACCACAAAGCGTCGGGTGCAAAATAAAAGAGGTGGAACTGTCAACCCTGTCGGCAATAACATCCTTGAAAACTACATAAGGTGTATCACAATCAACAACGAAGATTTTCTTAAGACCGATGGATCTTATGGTGAACCGACAAACATTGAGAGTGATGATGACTCTAAAGATATGTTATACGGGGAGATGAATTTGAGTCTAGAGACTATAACGACGCAGACCACCAAACCATTGACCAATGCTTCTACAACATCACCTTATGTTCAGATGCCAGAAGATAATTATACTATGGAGGATTGTGAATCACTGGAGGACATTCTAGAGCTGCTGCGTTGGTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko04218 ko05166 map04151 map04218 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

234

Amino Acids

27.28

Weight (kDa)

7.63

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 26 - 71 1.4e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 29 - 87 5.5e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 78 - 122 2.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 81 - 128 1.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AclWI GGATC 1 cut(s) 490
AcsI RAATTY 3 cut(s) 164, 261, 550
AfaI GTAC 2 cut(s) 285, 292
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 4 cut(s) 58, 112, 272, 428
AluBI AGCT 1 cut(s) 685
AluI AGCT 1 cut(s) 685
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 490
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 685, 688
ApoI RAATTY 3 cut(s) 164, 261, 550
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 49, 503, 606
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 672, 675
BccI CCATC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 2 cut(s) 560, 680
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 470
BisI GCNGC 2 cut(s) 686, 689
BlsI GCNGC 2 cut(s) 687, 690
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 133, 292
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 618
BoxI GACNNNNGTC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 689
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 89, 672
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 89, 672
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 672, 675
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 256, 306, 482
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 133, 292
BspPI GGATC 1 cut(s) 490
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 470
BsrI ACTGG 2 cut(s) 89, 672
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 3 cut(s) 256, 306, 482
Bst4CI ACNGT 1 cut(s) 400
BstAFI CTTAAG 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 420
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 259, 309, 485
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 3 cut(s) 256, 306, 482
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 672, 675
BstX2I RGATCY 1 cut(s) 482
BstYI RGATCY 1 cut(s) 482
BtsCI GGATG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 665
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 2 cut(s) 359, 583
Csp6I GTAC 2 cut(s) 284, 291
CviAII CATG 1 cut(s) 212
CviJI RGCY 1 cut(s) 685
CviKI_1 RGCY 1 cut(s) 685
CviQI GTAC 2 cut(s) 284, 291
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 258, 308, 484
DpnII GATC 3 cut(s) 256, 306, 482
Eco47I GGWCC 1 cut(s) 131
FaeI CATG 1 cut(s) 215
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 686, 689
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 686, 689
FspBI CTAG 2 cut(s) 560, 680
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 686, 689
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 128
HapII CCGG 1 cut(s) 323
HgaI GACGC 2 cut(s) 359, 583
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 4 cut(s) 92, 521, 556, 662
HpaII CCGG 1 cut(s) 323
HphI GGTGA 3 cut(s) 49, 503, 606
Hpy166II GTNNAC 3 cut(s) 82, 403, 494
Hpy188I TCNGA 2 cut(s) 97, 627
Hpy188III TCNNGA 3 cut(s) 304, 560, 680
Hpy8I GTNNAC 3 cut(s) 82, 403, 494
Hpy99I CGWCG 2 cut(s) 375, 577
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 2 cut(s) 192, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 3 cut(s) 256, 306, 482
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 6 cut(s) 70, 165, 336, 420, 645, 653
Lsp1109I GCAGC 2 cut(s) 672, 675
LweI GCATC 1 cut(s) 618
MaeI CTAG 2 cut(s) 560, 680
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 258, 308, 484
MboI GATC 3 cut(s) 256, 306, 482
MboII GAAGA 8 cut(s) 34, 70, 186, 260, 263, 266, 473, 647
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 6 cut(s) 10, 107, 164, 261, 550, 640
MlyI GAGTC 2 cut(s) 515, 565
MnlI CCTC 6 cut(s) 91, 192, 321, 383, 646, 664
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 3 cut(s) 228, 345, 471
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 376
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 256, 306, 482
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 133, 292
NmuCI GTSAC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 92, 662
PkrI GCNGC 2 cut(s) 687, 690
PleI GAGTC 2 cut(s) 515, 564
PpsI GAGTC 2 cut(s) 515, 564
PshAI GACNNNNGTC 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 133, 292
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 482
RsaI GTAC 2 cut(s) 285, 292
RsaNI GTAC 2 cut(s) 284, 291
SaqAI TTAA 3 cut(s) 228, 345, 471
SatI GCNGC 2 cut(s) 686, 689
Sau3AI GATC 3 cut(s) 256, 306, 482
Sau96I GGNCC 1 cut(s) 131
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 2 cut(s) 515, 565
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 36, 156, 203, 394, 443, 619, 687
SfaNI GCATC 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 6 cut(s) 10, 107, 164, 261, 550, 640
SspI AATATT 2 cut(s) 53, 343
SspMI CTAG 2 cut(s) 560, 680
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 3 cut(s) 72, 168, 303
TaqII GACCGA 1 cut(s) 491
TasI AATT 6 cut(s) 10, 107, 164, 261, 550, 640
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 92, 662
Tru1I TTAA 3 cut(s) 228, 345, 471
Tru9I TTAA 3 cut(s) 228, 345, 471
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 685, 688
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 17, 563
TspRI CASTG 1 cut(s) 672
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 3 cut(s) 164, 261, 550
XbaI TCTAGA 2 cut(s) 559, 679
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 2 cut(s) 560, 680
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.