Rmu_sc0008577.1_g000003
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008577.1
OG0004738
Physical Location & Seq
Forward (+)
14155 .. 14919
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008577.1_g000003.1.cds

Sequence Viewer

Length: 765 bp
atgaagccggagcctcatccggagaatgtcgacctcaacacccgtttattcaaacctccctcacctaatggtgactataagccaaacactctctttgaaaacccctctcactttgagaaccaagacagcagggggattgatctgaattattcagatcaataccatcagagttctcctctcctcggtggtaaccatttcggtggtaccactgttgagggctcttcatcaaaacccttttgtggggttgatctcgctaccatcaaagggttcaatcaaccttttgatgcatgttacaatcaggctgataatcccaacctgcaatcaaacaatgtcaatattttcccttatgcccccacggcagctgtttcgtttgcagacagccagaaggctgtcatgcatggcgggtggggggactacgatgacgctcctcgtcatcgttatcaagaccaacaccatcaccagatgccagactaccaccaccaccaccagatggcagctacgcagccgttgccggaggctacacaagcgacaagctgtgtccagcttccgcccctcgtcaatttccaagaattcgaatcagctacgcctagggttatgctgccatcagctgatgagtactactcccgtaacataaccccgaaggaaaatgagcttggcaagaagaagaggcattacactaaaaaagccagtaaagatgggcccccagcaatgatcatcaaggggcaatggacgccccaggaagacaggtctattgttttattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

254

Amino Acids

28.59

Weight (kDa)

6.03

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 490
AccI GTMKAC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 19
AciI CCGC 2 cut(s) 402, 548
AcsI RAATTY 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 731
AfaI GTAC 2 cut(s) 205, 617
AfiI CCNNNNNNNGG 5 cut(s) 182, 239, 240, 264, 490
AgsI TTSAA 3 cut(s) 52, 98, 271
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 636, 668
AluBI AGCT 7 cut(s) 362, 497, 534, 544, 581, 608, 652
AluI AGCT 7 cut(s) 362, 497, 534, 544, 581, 608, 652
Aor13HI TCCGGA 1 cut(s) 19
AoxI GGCC 1 cut(s) 698
ApaI GGGCCC 1 cut(s) 702
ApeKI GCWGC 4 cut(s) 359, 494, 502, 598
ApoI RAATTY 1 cut(s) 569
Asp718I GGTACC 1 cut(s) 203
AspA2I CCTAGG 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 698, 699
AsuHPI GGTGA 3 cut(s) 54, 83, 449
AsuII TTCGAA 1 cut(s) 573
AvrII CCTAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 702
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 221, 702
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbsI GAAGAC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 371, 506, 514, 585
BccI CCATC 6 cut(s) 171, 266, 462, 484, 610, 689
BceAI ACGGC 2 cut(s) 372, 490
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 1 cut(s) 737
BclI TGATCA 1 cut(s) 711
BfaI CTAG 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 324
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 4 cut(s) 360, 495, 503, 599
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 4 cut(s) 361, 496, 504, 600
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 1 cut(s) 737
BmgT120I GGNCC 2 cut(s) 698, 699
BmiI GGNNCC 4 cut(s) 12, 205, 700, 701
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 2 cut(s) 274, 453
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 4 cut(s) 160, 192, 605, 637
Bpu14I TTCGAA 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 181, 354, 587, 735
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 239, 240, 264, 490
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 714, 731
BseAI TCCGGA 1 cut(s) 19
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 4 cut(s) 181, 354, 587, 735
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 5 cut(s) 182, 239, 240, 264, 490
BseMI GCAATG 2 cut(s) 714, 731
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 3 cut(s) 165, 170, 417
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 4 cut(s) 371, 506, 514, 585
BseYI CCCAGC 1 cut(s) 703
BshFI GGCC 1 cut(s) 700
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 8, 20, 512
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 5 cut(s) 182, 239, 240, 264, 490
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 573
Bsp120I GGGCCC 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 221, 702
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 139, 154, 247, 711
BspACI CCGC 2 cut(s) 402, 548
BspANI GGCC 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 19
BspLI GGNNCC 4 cut(s) 12, 205, 700, 701
BspMI ACCTGC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 226
BspT104I TTCGAA 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 714, 731
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 4 cut(s) 181, 354, 587, 735
BssMI GATC 4 cut(s) 139, 154, 247, 711
BssNI GRCGYC 1 cut(s) 731
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 226, 659
BstACI GRCGYC 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 508
BstBI TTCGAA 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 354
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 4 cut(s) 142, 157, 250, 714
BstMBI GATC 4 cut(s) 139, 154, 247, 711
BstMWI GCNNNNNNNGC 4 cut(s) 356, 508, 524, 730
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 4 cut(s) 371, 506, 514, 585
BstV2I GAAGAC 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 700
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 698, 699
CseI GACGC 2 cut(s) 431, 739
Csp6I GTAC 2 cut(s) 204, 616
CviAII CATG 3 cut(s) 288, 394, 398
CviQI GTAC 2 cut(s) 204, 616
DpnI GATC 4 cut(s) 141, 156, 249, 713
DpnII GATC 4 cut(s) 139, 154, 247, 711
Eam1104I CTCTTC 2 cut(s) 226, 659
EarI CTCTTC 2 cut(s) 226, 659
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 221, 702
Eco91I GGTNACC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 699
EcoO65I GGTNACC 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 2 cut(s) 289, 399
EcoT38I GRGCYC 2 cut(s) 221, 702
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 3 cut(s) 291, 397, 401
FaiI YATR 7 cut(s) 78, 289, 348, 395, 399, 596, 632
FaqI GGGAC 1 cut(s) 425
FatI CATG 3 cut(s) 287, 393, 397
FauI CCCGC 1 cut(s) 395
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 360, 495, 503, 599
FokI GGATG 1 cut(s) 3
FriOI GRGCYC 2 cut(s) 221, 702
Fsp4HI GCNGC 4 cut(s) 360, 495, 503, 599
FspBI CTAG 1 cut(s) 588
GluI GCNGC 4 cut(s) 360, 495, 503, 599
GsaI CCCAGC 1 cut(s) 707
HaeIII GGCC 1 cut(s) 700
HapII CCGG 3 cut(s) 8, 20, 512
HgaI GACGC 2 cut(s) 431, 739
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 3 cut(s) 291, 397, 401
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 575
HpaII CCGG 3 cut(s) 8, 20, 512
HphI GGTGA 3 cut(s) 54, 83, 449
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 144, 154, 168
Hpy188III TCNNGA 2 cut(s) 20, 443
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 379, 634
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 287, 319, 374, 397
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 508, 524, 730
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 3 cut(s) 291, 397, 401
Kpn2I TCCGGA 1 cut(s) 19
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 139, 154, 247, 711
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 10, 430
Lsp1109I GCAGC 4 cut(s) 371, 506, 514, 585
LweI GCATC 2 cut(s) 274, 453
MaeI CTAG 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 71, 188, 290, 626
MalI GATC 4 cut(s) 141, 156, 249, 713
MboI GATC 4 cut(s) 139, 154, 247, 711
MboII GAAGA 4 cut(s) 213, 673, 676, 752
MhlI GDGCHC 2 cut(s) 221, 702
MluCI AATT 3 cut(s) 145, 559, 569
Mph1103I ATGCAT 2 cut(s) 289, 399
MroI TCCGGA 1 cut(s) 19
MseI TTAA 1 cut(s) 763
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 2 cut(s) 362, 608
MspI CCGG 3 cut(s) 8, 20, 512
MspR9I CCNGG 1 cut(s) 737
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 4 cut(s) 356, 508, 524, 730
NdeII GATC 4 cut(s) 139, 154, 247, 711
NlaIII CATG 3 cut(s) 291, 397, 401
NlaIV GGNNCC 4 cut(s) 12, 205, 700, 701
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 2 cut(s) 289, 399
NspI RCATGY 1 cut(s) 291
NspV TTCGAA 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 575
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 4 cut(s) 361, 496, 504, 600
Psp6I CCWGG 1 cut(s) 735
PspEI GGTNACC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 4 cut(s) 12, 205, 700, 701
PspOMI GGGCCC 1 cut(s) 698
PspPI GGNCC 2 cut(s) 698, 699
PvuII CAGCTG 2 cut(s) 362, 608
RsaI GTAC 2 cut(s) 205, 617
RsaNI GTAC 2 cut(s) 204, 616
RseI CAYNNNNRTG 1 cut(s) 198
SalI GTCGAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 763
SatI GCNGC 4 cut(s) 360, 495, 503, 599
Sau3AI GATC 4 cut(s) 139, 154, 247, 711
Sau96I GGNCC 2 cut(s) 698, 699
ScaI AGTACT 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 2 cut(s) 221, 702
SfaNI GCATC 2 cut(s) 274, 453
SfuI TTCGAA 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 145, 559, 569
SsiI CCGC 2 cut(s) 402, 548
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 30, 573
TasI AATT 3 cut(s) 145, 559, 569
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 763
Tru9I TTAA 1 cut(s) 763
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 359, 494, 502, 598
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 17, 213
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 490
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 291
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 588
ZrmI AGTACT 1 cut(s) 617
Zsp2I ATGCAT 2 cut(s) 289, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.