AT3G27785
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004738
Physical Location & Seq
Reverse (-)
10288603 .. 10290934
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27785.1

Sequence Viewer

Length: 1314 bp
ATGGAGTTCGAGTCAGTGTTCAAAATGCATTATCCGTATCTCGCAGCCGTTATCTACGATGATAGCTCCACTTTAAAAGATTTTCATCCATCTCTTACCGATGATTTTTCTTGTGTACACAATGTGCATCACAAACCATCGATGCCTCACACATATGAAATACCATCAAAAGAAACCATTAGGGGCATCACTCCTTCTCCATGCACTGAAGCTTTCGAGGCATGTTTTCATGGCACATCCAACGACCATGTTTTTTTTGGCATGGCCTATACCACCCCACCAACTATTGAACCCAACGTTTCACATGTCTCACATGACAATACTATGTGGGAAAACGATCAAAACCAAGGATTCATCTTTGGAACCGAGTCAACCCTCAATCAAGCCATGGCGGACTCTAATCAATTCAATATGCCAAAACCACTCTTGAGCGCAAACGAAGACACCATCATGAATCGACGTCAAAATAACCAGGTAATGATCAAGACCGAGCAGATCAAGAAGAAGAACAAGAGATTTCAGATGAGGAGGATATGTAAACCCACAAAAAAAGCTAGCATCATCAAAGGACAATGGACTCCTGAAGAAGACAAGTTATTGGTGCAGCTAGTGGACCTTCACGGAACTAAAAAATGGTCTCAGATTGCTAAGATGCTTCAAGGACGAGTTGGAAAACAGTGCAGAGAAAGGTGGCATAACCATCTCCGTCCCGATATCAAGAAAGATGGATGGACTGAAGAAGAGGATATAATACTGATAAAAGCCCATAAGGAGATTGGGAACAGATGGGCTGAGATAGCTCGAAAACTCCCGGGACGCACTGAAAATACGATCAAGAACCATTGGAACGCGACTAAACGTCGACAACACTCGAGGAGGACTAAAGGAAAAGATGAAATTTCCCTTTCACTTGGTAGCAACACTCTTCAGAACTACATTAGGTCTGTTACCTACAATGATGATCCTTTCATGACCGCAAATGCAAACGCAAACATTGGTCCAAGAAACATGAGAGGTAAAGGTAAGAATGTAATGGTTGCGGTCTCGGAGTATGATGAGGGTGAATGTAAGTATATTGTGGATGGTGTGAATAACTTGGGTTTAGAAGATGGAAGGATCAAGATGCCGTCATTGGCGGCTATGTCGGCCTCCGGATCAGCGTCTACTTCTGGTTCTGCGTCTGGTTCTGGAAGTGGTGTGACCATGGAGATTGATGAGCCGATGACTGATAGCTGGATGGTGATGCATGGATGTGATGAAGTTATGATGAACGAGATTGCTTTGCTGGAGATGATTGCTCATGGTCGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042304 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

437

Amino Acids

49.49

Weight (kDa)

7.3

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 189 - 235 4.1e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 192 - 250 6.5e-21 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 242 - 283 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 244 - 286 4.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 463
AccI GTMKAC 2 cut(s) 862, 1163
AccII CGCG 1 cut(s) 851
AccIII TCCGGA 1 cut(s) 1151
AciI CCGC 4 cut(s) 392, 975, 1040, 1136
AclI AACGTT 1 cut(s) 297
AclWI GGATC 3 cut(s) 956, 1124, 1162
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 4 cut(s) 228, 603, 756, 911
AcyI GRCGYC 1 cut(s) 460
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 4 cut(s) 22, 290, 409, 659
AhdI GACNNNNNGTC 1 cut(s) 858
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 6 cut(s) 66, 212, 554, 607, 800, 1233
AluI AGCT 6 cut(s) 66, 212, 554, 607, 800, 1233
Alw26I GTCTC 3 cut(s) 313, 642, 1048
AlwI GGATC 3 cut(s) 956, 1124, 1162
Ama87I CYCGRG 2 cut(s) 811, 871
Aor13HI TCCGGA 1 cut(s) 1151
AoxI GGCC 2 cut(s) 264, 1146
ApeKI GCWGC 2 cut(s) 44, 604
ApoI RAATTY 1 cut(s) 897
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 613, 998
AsuC2I CCSGG 2 cut(s) 812, 813
AsuHPI GGTGA 2 cut(s) 1073, 1252
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 2 cut(s) 811, 871
AvaII GGWCC 2 cut(s) 613, 998
BbsI GAAGAC 2 cut(s) 447, 594
BbvI GCAGC 2 cut(s) 56, 616
BceAI ACGGC 2 cut(s) 32, 1111
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 2 cut(s) 812, 813
BcoDI GTCTC 3 cut(s) 313, 642, 1048
BfaI CTAG 2 cut(s) 555, 608
BisI GCNGC 3 cut(s) 45, 605, 1137
BlsI GCNGC 3 cut(s) 46, 606, 1138
Bme1390I CCNGG 3 cut(s) 473, 812, 813
Bme18I GGWCC 2 cut(s) 613, 998
BmeRI GACNNNNNGTC 1 cut(s) 858
BmeT110I CYCGRG 2 cut(s) 811, 871
BmgT120I GGNCC 2 cut(s) 613, 998
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 3 cut(s) 473, 812, 813
BmsI GCATC 7 cut(s) 132, 136, 195, 567, 642, 1113, 1233
BmtI GCTAGC 1 cut(s) 558
BpiI GAAGAC 2 cut(s) 447, 594
BpmI CTGGAG 1 cut(s) 1307
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 2 cut(s) 812, 813
Bsa29I ATCGAT 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 460
BsaI GGTCTC 2 cut(s) 642, 1048
BsaJI CCNNGG 4 cut(s) 346, 387, 811, 1203
BsaWI WCCGGW 1 cut(s) 1151
BsaXI ACNNNNNCTCC 5 cut(s) 26, 181, 211, 520, 550
Bse8I GATNNNNATC 1 cut(s) 84
BseAI TCCGGA 1 cut(s) 1151
BseBI CCWGG 1 cut(s) 473
BseCI ATCGAT 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 346, 387, 811, 1203
BseGI GGATG 6 cut(s) 85, 236, 734, 1087, 1242, 1256
BseJI GATNNNNATC 1 cut(s) 84
BseMII CTCAG 2 cut(s) 653, 783
BseRI GAGGAG 2 cut(s) 541, 889
BseXI GCAGC 2 cut(s) 56, 616
BsgI GTGCAG 2 cut(s) 623, 700
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 2 cut(s) 266, 1148
BshVI ATCGAT 1 cut(s) 140
BsiHKCI CYCGRG 2 cut(s) 811, 871
BsiSI CCGG 2 cut(s) 812, 1152
BslFI GGGAC 2 cut(s) 693, 828
BsmAI GTCTC 3 cut(s) 313, 642, 1048
BsmFI GGGAC 2 cut(s) 693, 828
BsnI GGCC 2 cut(s) 266, 1148
Bso31I GGTCTC 2 cut(s) 642, 1048
BsoBI CYCGRG 2 cut(s) 811, 871
Bsp13I TCCGGA 1 cut(s) 1151
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
Bsp19I CCATGG 2 cut(s) 387, 1203
BspACI CCGC 4 cut(s) 392, 975, 1040, 1136
BspANI GGCC 2 cut(s) 266, 1148
BspCNI CTCAG 2 cut(s) 652, 784
BspDI ATCGAT 1 cut(s) 140
BspEI TCCGGA 1 cut(s) 1151
BspFNI CGCG 1 cut(s) 851
BspHI TCATGA 2 cut(s) 450, 969
BspLI GGNNCC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 3 cut(s) 956, 1124, 1162
BspTNI GGTCTC 2 cut(s) 642, 1048
BsrGI TGTACA 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 346, 387, 811, 1203
BssMI GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
BssNI GRCGYC 1 cut(s) 460
BssT1I CCWWGG 3 cut(s) 346, 387, 1203
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 2 cut(s) 735, 930
BstACI GRCGYC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 3 cut(s) 639, 648, 792
BstDSI CCRYGG 2 cut(s) 387, 1203
BstF5I GGATG 6 cut(s) 85, 236, 734, 1087, 1242, 1256
BstFNI CGCG 1 cut(s) 851
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 7 cut(s) 340, 483, 498, 834, 964, 1119, 1157
BstMAI GTCTC 3 cut(s) 313, 642, 1048
BstMBI GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
BstMWI GCNNNNNNNGC 3 cut(s) 218, 797, 1145
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 225, 308
BstSCI CCNGG 3 cut(s) 471, 810, 811
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 2 cut(s) 56, 616
BstV2I GAAGAC 2 cut(s) 447, 594
Bsu15I ATCGAT 1 cut(s) 140
BsuRI GGCC 2 cut(s) 266, 1148
BsuTUI ATCGAT 1 cut(s) 140
BtgI CCRYGG 2 cut(s) 387, 1203
BtsCI GGATG 6 cut(s) 85, 236, 734, 1087, 1242, 1256
BtsIMutI CAGTG 4 cut(s) 21, 204, 683, 819
Cac8I GCNNGC 1 cut(s) 556
CciI TCATGA 2 cut(s) 450, 969
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 613, 998
Cfr9I CCCGGG 1 cut(s) 811
ClaI ATCGAT 1 cut(s) 140
CseI GACGC 3 cut(s) 825, 1149, 1167
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 1 cut(s) 116
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 3 cut(s) 639, 648, 792
DpnI GATC 7 cut(s) 339, 482, 497, 833, 963, 1118, 1156
DpnII GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
DraI TTTAAA 1 cut(s) 75
DraIII CACNNNGTG 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 858
Eam1104I CTCTTC 2 cut(s) 735, 930
Eam1105I GACNNNNNGTC 1 cut(s) 858
EarI CTCTTC 2 cut(s) 735, 930
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 3 cut(s) 346, 387, 1203
Eco31I GGTCTC 2 cut(s) 642, 1048
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 2 cut(s) 613, 998
Eco57I CTGAAG 4 cut(s) 228, 603, 756, 911
Eco88I CYCGRG 2 cut(s) 811, 871
EcoRII CCWGG 1 cut(s) 471
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 3 cut(s) 346, 387, 1203
EcoT22I ATGCAT 2 cut(s) 30, 1248
ErhI CCWWGG 3 cut(s) 346, 387, 1203
FaqI GGGAC 2 cut(s) 693, 828
FauNDI CATATG 1 cut(s) 154
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 2 cut(s) 862, 1163
Fnu4HI GCNGC 3 cut(s) 45, 605, 1137
FokI GGATG 6 cut(s) 72, 223, 741, 1094, 1249, 1263
Fsp4HI GCNGC 3 cut(s) 45, 605, 1137
FspBI CTAG 2 cut(s) 555, 608
GlaI GCGC 1 cut(s) 433
GluI GCNGC 3 cut(s) 45, 605, 1137
GsuI CTGGAG 1 cut(s) 1307
HaeIII GGCC 2 cut(s) 266, 1148
HapII CCGG 2 cut(s) 812, 1152
HgaI GACGC 3 cut(s) 825, 1149, 1167
HhaI GCGC 1 cut(s) 434
Hin1I GRCGYC 1 cut(s) 460
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 372, 863
HindII GTYRAC 2 cut(s) 372, 863
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 6 cut(s) 11, 351, 368, 395, 454, 577
HpaII CCGG 2 cut(s) 812, 1152
HphI GGTGA 2 cut(s) 1073, 1252
Hpy166II GTNNAC 7 cut(s) 116, 118, 372, 539, 613, 863, 1164
Hpy188I TCNGA 4 cut(s) 522, 642, 930, 1048
Hpy8I GTNNAC 7 cut(s) 116, 118, 372, 539, 613, 863, 1164
Hpy99I CGWCG 2 cut(s) 462, 864
HpyAV CCTTC 3 cut(s) 204, 626, 1107
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 3 cut(s) 297, 460, 859
HpyCH4V TGCA 7 cut(s) 28, 127, 204, 604, 681, 983, 1246
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 797, 1145
HpyF3I CTNAG 3 cut(s) 639, 648, 792
HpySE526I ACGT 3 cut(s) 297, 460, 859
Hsp92I GRCGYC 1 cut(s) 460
HspAI GCGC 1 cut(s) 432
Kpn2I TCCGGA 1 cut(s) 1151
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 56, 616
LweI GCATC 7 cut(s) 132, 136, 195, 567, 642, 1113, 1233
MabI ACCWGGT 1 cut(s) 471
MaeI CTAG 2 cut(s) 555, 608
MaeII ACGT 3 cut(s) 297, 460, 859
MaeIII GTNAC 2 cut(s) 946, 1198
MalI GATC 7 cut(s) 339, 482, 497, 833, 963, 1118, 1156
MboI GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
MboII GAAGA 9 cut(s) 452, 514, 517, 596, 599, 749, 752, 917, 1118
MluCI AATT 2 cut(s) 404, 897
MlyI GAGTC 4 cut(s) 20, 377, 389, 571
MmeI TCCRAC 2 cut(s) 264, 649
Mph1103I ATGCAT 2 cut(s) 30, 1248
MroI TCCGGA 1 cut(s) 1151
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 3 cut(s) 153, 449, 1251
MspI CCGG 2 cut(s) 812, 1152
MspR9I CCNGG 3 cut(s) 473, 812, 813
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 218, 797, 1145
NciI CCSGG 2 cut(s) 812, 813
NcoI CCATGG 2 cut(s) 387, 1203
NdeI CATATG 1 cut(s) 154
NdeII GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 1198
NsiI ATGCAT 2 cut(s) 30, 1248
NspI RCATGY 2 cut(s) 225, 308
PaeR7I CTCGAG 1 cut(s) 871
PagI TCATGA 2 cut(s) 450, 969
PciI ACATGT 1 cut(s) 304
PfeI GAWTC 2 cut(s) 351, 454
PkrI GCNGC 3 cut(s) 46, 606, 1138
PleI GAGTC 4 cut(s) 19, 376, 389, 571
PpsI GAGTC 4 cut(s) 19, 376, 389, 571
PscI ACATGT 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 613, 998
PspXI VCTCGAGB 1 cut(s) 871
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 3 cut(s) 153, 449, 1251
SalI GTCGAC 1 cut(s) 861
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 3 cut(s) 45, 605, 1137
Sau3AI GATC 7 cut(s) 337, 480, 495, 831, 961, 1116, 1154
Sau96I GGNCC 2 cut(s) 613, 998
SchI GAGTC 4 cut(s) 20, 377, 389, 571
ScrFI CCNGG 3 cut(s) 473, 812, 813
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 7 cut(s) 132, 136, 195, 567, 642, 1113, 1233
Sfr274I CTCGAG 1 cut(s) 871
SinI GGWCC 2 cut(s) 613, 998
SlaI CTCGAG 1 cut(s) 871
SmaI CCCGGG 1 cut(s) 813
SmiMI CAYNNNNRTG 3 cut(s) 153, 449, 1251
SmlI CTYRAG 2 cut(s) 427, 871
SmoI CTYRAG 2 cut(s) 427, 871
Sse9I AATT 2 cut(s) 404, 897
SsiI CCGC 4 cut(s) 392, 975, 1040, 1136
SspMI CTAG 2 cut(s) 555, 608
StyD4I CCNGG 3 cut(s) 471, 810, 811
StyI CCWWGG 3 cut(s) 346, 387, 1203
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 3 cut(s) 300, 463, 862
TaqI TCGA 7 cut(s) 9, 140, 216, 457, 802, 862, 872
TaqII GACCGA 1 cut(s) 503
TasI AATT 2 cut(s) 404, 897
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 1139
TfiI GAWTC 2 cut(s) 351, 454
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 4 cut(s) 21, 211, 683, 826
TseFI GTSAC 1 cut(s) 1198
TseI GCWGC 2 cut(s) 44, 604
Tsp45I GTSAC 1 cut(s) 1198
TspDTI ATGAA 9 cut(s) 74, 171, 218, 343, 467, 909, 958, 1272, 1283
TspGWI ACGGA 3 cut(s) 24, 636, 695
TspMI CCCGGG 1 cut(s) 811
TspRI CASTG 4 cut(s) 21, 211, 683, 826
VpaK11BI GGWCC 2 cut(s) 613, 998
XapI RAATTY 1 cut(s) 897
XceI RCATGY 2 cut(s) 225, 308
XcmI CCANNNNNNNNNTGG 2 cut(s) 254, 773
XhoI CTCGAG 1 cut(s) 871
XmaI CCCGGG 1 cut(s) 811
XmiI GTMKAC 2 cut(s) 862, 1163
XspI CTAG 2 cut(s) 555, 608
ZraI GACGTC 1 cut(s) 461
Zsp2I ATGCAT 2 cut(s) 30, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.