Rh2CG615600
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004738
Physical Location & Seq
Forward (+)
79181642 .. 79186671
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG615600.1

Sequence Viewer

Length: 1341 bp
ATGGAAGGGTTTAATCCTTTTGACGCATGTTACAACCAGCCATATCATCATCATCATCCCAACCAGCAAGCAAACGATGTCAATGTTTTCCCTTATACCCCCGCAGCATCAGCTGTTTCGTTTGCAGACAGCCAGAAGGCTGTCATGCATGGCGGTTGGGGGGACTACGATGACGCTCCTCGTCATCGTCATCAAGACCACCACCAGATGCCCGATTTGCAGCCGCTGCATGTGGCTGCACAAGCGGCTAGCTATGTCCAGCTTCCGCCCCTTGTCAATTTCCAAGATATCGAATCAGCTACGCCTGGGGTTACGCTGGCCGATGAGTACTCCTGTAACATAACCCCGTTGGAAAATGATCTTCGCAAAAAGAAGAGGCATTATATGAATAAAACCAGTAAAGAGGAGCGCGAAGCAATGATCATCAAGGGGCAATGGACACCCGGGGAAGACAGACTATTAACAGAGCTGGTGGAGAGGCATGGGATTAAGAAATGGTCTCAAATTGCTAAGATGCTGAATGGCAGAGTTGGAAAACAATGCAGAGAAAGATGGCACAACCATCTGCGCCCCGACATTAGGAAAGAAATGTGGAGCGAAGAAGAGGACAAGATCCTCATTGAGGCGCACAAACAGATCGGAAACCGGTGGGCCGAGATAGCCAAGAGGCTTCCGGGGAGGACGGAGAACACTATCAAGAACCACTGGAACGCCACCAAGAGGAAGCGATACGCGAAGAGAAAACTGACTAGCACTATCAATTTGAACGTCAAGGAATCCTCTGCCAGTATACCTATTAATGAGAGTACTCTGCTGTCCAAATACATCAAGAGCATGGCGAGATCCTCGGCCACTGCTTCCGCCGAAAAGAAGAAGGGTAAGTCTGCAGTAGTGTCTGGTGAATCAAGTCCGCAAAGTTTAGCTGAGTCCGACGTCTATCGTCCCCAGCTTGAGAAGGGTAAGATTGCAGTGGTGAATGGTGATAAATCAACAAGTTTGTATGATCTACCTGAGTCCGAAGTCTATCGTCCCCAGTTCGAGACCAGCCACTACGATATGGAATGGGCGGCTTCGGTGGCGGCTGCCGCCGCTGTGAATGCAAACAAGCAGCTGAACAACTCCAGCGTAGCGGCGACTATGGGGAGCATTAGCTCTTATATCTCTTCTGACAGAACCATGTATCCTGAGTTTAACGGGTACGGGAATGGGAGTCATACTGGCATGCAGACCAAAGATAAGGTTCGTCTCTCTTTGGAGATGAACTGTCTTATGCAGGAGCAGGCTCACTTGAAGAAACGAGATGTGGATTTGATGGAGATGATCCGTGGAACTCGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

446

Amino Acids

50.5

Weight (kDa)

8.95

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 143 - 189 7.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 146 - 202 1.8e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 195 - 237 6.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 198 - 244 1.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 936
AccI GTMKAC 1 cut(s) 790
AccII CGCG 2 cut(s) 411, 734
AclWI GGATC 3 cut(s) 607, 837, 1315
AcoI YGGCCR 2 cut(s) 318, 849
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 3 cut(s) 329, 808, 1199
AfiI CCNNNNNNNGG 3 cut(s) 579, 622, 720
AgeI ACCGGT 1 cut(s) 645
AgsI TTSAA 2 cut(s) 766, 1291
AjnI CCWGG 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 1165, 1197
AluBI AGCT 9 cut(s) 113, 252, 262, 299, 469, 923, 949, 1111, 1152
AluI AGCT 9 cut(s) 113, 252, 262, 299, 469, 923, 949, 1111, 1152
Alw26I GTCTC 3 cut(s) 504, 1034, 1250
AlwI GGATC 3 cut(s) 607, 837, 1315
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 3 cut(s) 318, 651, 849
ApeKI GCWGC 6 cut(s) 104, 220, 226, 236, 1082, 1108
AseI ATTAAT 1 cut(s) 798
AsiGI ACCGGT 1 cut(s) 645
AspLEI GCGC 3 cut(s) 411, 570, 628
AspS9I GGNCC 1 cut(s) 651
AsuC2I CCSGG 3 cut(s) 444, 445, 675
AsuHPI GGTGA 3 cut(s) 911, 985, 992
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 6 cut(s) 116, 213, 223, 232, 1069, 1120
BccI CCATC 3 cut(s) 546, 570, 1306
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 1191
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 3 cut(s) 444, 445, 675
BcoDI GTCTC 3 cut(s) 504, 1034, 1250
BfaI CTAG 2 cut(s) 249, 750
BfmI CTRYAG 1 cut(s) 885
BfuI GTATCC 1 cut(s) 1191
BmcAI AGTACT 2 cut(s) 329, 808
Bme1390I CCNGG 4 cut(s) 306, 444, 445, 675
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 651
BmrFI CCNGG 4 cut(s) 306, 444, 445, 675
BmrI ACTGGG 1 cut(s) 1027
BmsI GCATC 3 cut(s) 116, 198, 504
BmtI GCTAGC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 1027
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 1105
BpuEI CTTGAG 1 cut(s) 971
BpuMI CCSGG 3 cut(s) 444, 445, 675
BsaHI GRCGYC 1 cut(s) 933
BsaI GGTCTC 2 cut(s) 504, 1034
BsaJI CCNNGG 6 cut(s) 305, 443, 444, 674, 846, 1324
BsaWI WCCGGW 1 cut(s) 645
Bsc4I CCNNNNNNNGG 3 cut(s) 579, 622, 720
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 5 cut(s) 396, 710, 786, 1033, 1222
Bse3DI GCAATG 2 cut(s) 423, 440
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 6 cut(s) 305, 443, 444, 674, 846, 1324
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 579, 622, 720
BseMI GCAATG 2 cut(s) 423, 440
BseMII CTCAG 3 cut(s) 915, 1002, 1176
BseNI ACTGG 5 cut(s) 396, 710, 786, 1033, 1222
BseRI GAGGAG 2 cut(s) 168, 419
BseXI GCAGC 6 cut(s) 116, 213, 223, 232, 1069, 1120
BseYI CCCAGC 1 cut(s) 945
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 411, 734
BshFI GGCC 3 cut(s) 320, 653, 851
BshTI ACCGGT 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 444, 646, 674
BslFI GGGAC 3 cut(s) 176, 927, 1014
BslI CCNNNNNNNGG 3 cut(s) 579, 622, 720
BsmAI GTCTC 3 cut(s) 504, 1034, 1250
BsmBI CGTCTC 1 cut(s) 1250
BsmFI GGGAC 3 cut(s) 176, 927, 1014
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 3 cut(s) 320, 653, 851
Bso31I GGTCTC 2 cut(s) 504, 1034
BsoBI CYCGRG 1 cut(s) 443
Bsp143I GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
BspANI GGCC 3 cut(s) 320, 653, 851
BspCNI CTCAG 3 cut(s) 916, 1003, 1177
BspFNI CGCG 2 cut(s) 411, 734
BspMAI CTGCAG 1 cut(s) 889
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 607, 837, 1315
BspTNI GGTCTC 2 cut(s) 504, 1034
BsrDI GCAATG 2 cut(s) 423, 440
BsrFI RCCGGY 1 cut(s) 645
BsrI ACTGG 5 cut(s) 396, 710, 786, 1033, 1222
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 6 cut(s) 305, 443, 444, 674, 846, 1324
BssMI GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
BssNAI GTATAC 1 cut(s) 791
BssNI GRCGYC 1 cut(s) 933
Bst1107I GTATAC 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 1265
Bst6I CTCTTC 4 cut(s) 368, 597, 731, 1168
BstACI GRCGYC 1 cut(s) 933
BstAPI GCANNNNNTGC 1 cut(s) 226
BstC8I GCNNGC 5 cut(s) 69, 250, 318, 1223, 1281
BstDEI CTNAG 4 cut(s) 510, 924, 1011, 1185
BstDSI CCRYGG 1 cut(s) 1324
BstENI CCTNNNNNAGG 1 cut(s) 620
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 411, 734
BstHHI GCGC 3 cut(s) 411, 570, 628
BstKTI GATC 7 cut(s) 361, 423, 615, 639, 845, 1006, 1323
BstMAI GTCTC 3 cut(s) 504, 1034, 1250
BstMBI GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 3 cut(s) 30, 233, 1225
BstSCI CCNGG 4 cut(s) 304, 442, 443, 673
BstSFI CTRYAG 1 cut(s) 885
BstUI CGCG 2 cut(s) 411, 734
BstV1I GCAGC 6 cut(s) 116, 213, 223, 232, 1069, 1120
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 2 cut(s) 612, 842
BstYI RGATCY 2 cut(s) 612, 842
BstZ17I GTATAC 1 cut(s) 791
BsuI GTATCC 1 cut(s) 1191
BsuRI GGCC 3 cut(s) 320, 653, 851
BtgI CCRYGG 1 cut(s) 1324
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 2 cut(s) 852, 975
BtsIMutI CAGTG 3 cut(s) 703, 852, 975
Cac8I GCNNGC 5 cut(s) 69, 250, 318, 1223, 1281
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 3 cut(s) 411, 570, 628
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 651
Cfr9I CCCGGG 1 cut(s) 443
CseI GACGC 2 cut(s) 32, 182
Csp6I GTAC 3 cut(s) 328, 807, 1198
CspAI ACCGGT 1 cut(s) 645
CviAII CATG 8 cut(s) 27, 145, 149, 230, 482, 835, 1177, 1222
CviQI GTAC 3 cut(s) 328, 807, 1198
DdeI CTNAG 4 cut(s) 510, 924, 1011, 1185
DpnI GATC 7 cut(s) 360, 422, 614, 638, 844, 1005, 1322
DpnII GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
EaeI YGGCCR 2 cut(s) 318, 849
Eam1104I CTCTTC 4 cut(s) 368, 597, 731, 1168
EarI CTCTTC 4 cut(s) 368, 597, 731, 1168
EciI GGCGGA 2 cut(s) 255, 850
Eco31I GGTCTC 2 cut(s) 504, 1034
Eco32I GATATC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 1250
FaeI CATG 8 cut(s) 30, 148, 152, 233, 485, 838, 1180, 1225
FaqI GGGAC 3 cut(s) 176, 927, 1014
FatI CATG 8 cut(s) 26, 144, 148, 229, 481, 834, 1176, 1221
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 790
FokI GGATG 1 cut(s) 42
FspBI CTAG 2 cut(s) 249, 750
GlaI GCGC 3 cut(s) 410, 569, 627
GsaI CCCAGC 1 cut(s) 949
GsuI CTGGAG 1 cut(s) 1105
HaeIII GGCC 3 cut(s) 320, 653, 851
HapII CCGG 3 cut(s) 444, 646, 674
HgaI GACGC 2 cut(s) 32, 182
HhaI GCGC 3 cut(s) 411, 570, 628
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 8 cut(s) 30, 148, 152, 233, 485, 838, 1180, 1225
Hin6I GCGC 3 cut(s) 409, 568, 626
HinP1I GCGC 3 cut(s) 409, 568, 626
HinfI GANTC 6 cut(s) 293, 776, 902, 926, 1013, 1210
HpaII CCGG 3 cut(s) 444, 646, 674
HphI GGTGA 3 cut(s) 911, 985, 992
Hpy166II GTNNAC 1 cut(s) 791
Hpy188I TCNGA 4 cut(s) 641, 931, 1018, 1168
Hpy188III TCNNGA 5 cut(s) 194, 697, 829, 1039, 1184
Hpy8I GTNNAC 1 cut(s) 791
Hpy99I CGWCG 1 cut(s) 935
HpyAV CCTTC 3 cut(s) 130, 868, 949
HpyCH4III ACNGT 1 cut(s) 1265
HpyCH4IV ACGT 2 cut(s) 768, 933
HpyF3I CTNAG 4 cut(s) 510, 924, 1011, 1185
HpySE526I ACGT 2 cut(s) 768, 933
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 8 cut(s) 30, 148, 152, 233, 485, 838, 1180, 1225
HspAI GCGC 3 cut(s) 409, 568, 626
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
LmnI GCTCC 5 cut(s) 181, 406, 594, 1143, 1276
Lsp1109I GCAGC 6 cut(s) 116, 213, 223, 232, 1069, 1120
LweI GCATC 3 cut(s) 116, 198, 504
MaeI CTAG 2 cut(s) 249, 750
MaeII ACGT 2 cut(s) 768, 933
MaeIII GTNAC 3 cut(s) 29, 310, 335
MalI GATC 7 cut(s) 360, 422, 614, 638, 844, 1005, 1322
MboI GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
MboII GAAGA 9 cut(s) 353, 385, 461, 611, 614, 748, 883, 1155, 1303
MflI RGATCY 2 cut(s) 612, 842
MluCI AATT 3 cut(s) 277, 504, 760
MlyI GAGTC 3 cut(s) 935, 1022, 1219
MmeI TCCRAC 3 cut(s) 330, 511, 954
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 6 cut(s) 12, 461, 489, 798, 1191, 1339
MspA1I CMGCKG 4 cut(s) 113, 226, 1091, 1111
MspI CCGG 3 cut(s) 444, 646, 674
MspR9I CCNGG 4 cut(s) 306, 444, 445, 675
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 411, 734
NciI CCSGG 3 cut(s) 444, 445, 675
NdeII GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 8 cut(s) 30, 148, 152, 233, 485, 838, 1180, 1225
NmeAIII GCCGAG 2 cut(s) 679, 827
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 3 cut(s) 30, 233, 1225
PaeI GCATGC 1 cut(s) 1225
PctI GAATGC 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 293, 776, 902
PinAI ACCGGT 1 cut(s) 645
PleI GAGTC 3 cut(s) 934, 1021, 1218
PpsI GAGTC 3 cut(s) 934, 1021, 1218
PshBI ATTAAT 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 1 cut(s) 651
PstI CTGCAG 1 cut(s) 889
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 612, 842
PvuII CAGCTG 2 cut(s) 113, 1111
RsaI GTAC 3 cut(s) 329, 808, 1199
RsaNI GTAC 3 cut(s) 328, 807, 1198
SaqAI TTAA 6 cut(s) 12, 461, 489, 798, 1191, 1339
Sau3AI GATC 7 cut(s) 358, 420, 612, 636, 842, 1003, 1320
Sau96I GGNCC 1 cut(s) 651
ScaI AGTACT 2 cut(s) 329, 808
SchI GAGTC 3 cut(s) 935, 1022, 1219
ScrFI CCNGG 4 cut(s) 306, 444, 445, 675
SfaNI GCATC 3 cut(s) 116, 198, 504
SfcI CTRYAG 1 cut(s) 885
SmaI CCCGGG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SphI GCATGC 1 cut(s) 1225
Sse9I AATT 3 cut(s) 277, 504, 760
SspMI CTAG 2 cut(s) 249, 750
StyD4I CCNGG 4 cut(s) 304, 442, 443, 673
TaaI ACNGT 1 cut(s) 1265
TaiI ACGT 2 cut(s) 771, 936
TaqI TCGA 2 cut(s) 291, 1038
TasI AATT 3 cut(s) 277, 504, 760
TatI WGTACW 2 cut(s) 327, 806
TauI GCSGC 7 cut(s) 226, 248, 1070, 1082, 1088, 1091, 1133
TfiI GAWTC 3 cut(s) 293, 776, 902
Tru1I TTAA 6 cut(s) 12, 461, 489, 798, 1191, 1339
Tru9I TTAA 6 cut(s) 12, 461, 489, 798, 1191, 1339
TscAI CASTG 3 cut(s) 710, 859, 975
TseI GCWGC 6 cut(s) 104, 220, 226, 236, 1082, 1108
TspDTI ATGAA 2 cut(s) 401, 1274
TspGWI ACGGA 2 cut(s) 698, 1313
TspMI CCCGGG 1 cut(s) 443
TspRI CASTG 3 cut(s) 710, 859, 975
VspI ATTAAT 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 620
XceI RCATGY 3 cut(s) 30, 233, 1225
XmaI CCCGGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 2 cut(s) 249, 750
ZraI GACGTC 1 cut(s) 934
ZrmI AGTACT 2 cut(s) 329, 808
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.