Rh2AG635300
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004738
Physical Location & Seq
Forward (+)
86069135 .. 86071361
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG635300.1

Sequence Viewer

Length: 1041 bp
ATGGCAGCTACGCAGCCGTTGCCGGAGGCTACACAAGCGACAAGCTGTGTCCAGCTTCCGCCCCTCGTCAATTTCCAAGAATTCGAATCAGCTACGCCTAGGGTTATGCTGCCATCAGCTGATGAGTACTACTCCCGTAACATAACCCCGAAGGAAAATGAGCTTGGCAAGAAGAAGAGGCATTACACTAAAAAAGCCAGTAAAGATGGGCGCGAAGCAATGATCATCAAGGGGCAATGGAAGCCCCAGGAAGACAGACTACTGACAGAGCTAGTGGGGAGATATGGGGATAAAAAGTGGTCTCAAATTTCTAAGGTGCTGAAAGGTCGAGTCGGAAAACAGTGTAGAGAAAGATGGCACAACCATCTCCGGCCTGACATTAGGAAAGAAATGTGGAGCGTAGAAGAGGATAAGATCCTGATCGAGGTGCACAAACAGATCGGAAACCGGTGGGCCGAGATCGCCAAGAGGCTTCCGGGGAGGACCGAGAACACTATCAAGAACCACTGGAACGCCACCATGAGGAAGCGATACCTCAAGAGAAAACTGACTACCAGTATCAATCGGAACATTAAGGACTCATCCGCCATCTACATTAATGAGAGCACTGTCCTGTCCAACTACATCAAGAGCGTGGTGAAATCCTCGGCCGCTGCTTCGGCCGAAAAGAAGAAGGGGAAGACTGCAGTGGTGTATGGTGAACAATCAAGTCTGCAAAATTTACCTGAGACCGACGCCTATCATCCCCAGTTTGAGAAGGGTAACGGTGCAATGGTGTATGGTGAACAATCAACAAGTTTGCACGATCTACCTATGTCCGAAGTCTATCGTCCCCAGTTCGAGCCTAGCTCCTACAATATGGAATGGGCGGCTTCGGTGGCAGCCCCCGCTGCTATGAATGCAAACAAGCAGCTGAACAACTCCCGCGTGGCGGCGACTATGGGGAGCAGCAGCTCTTATCTCTCTTCTAACAGAACCATGTATCCTGAGTTCTACGGGTACGGCAATGGGGCTGAGAAGCTTGATAAAACTCCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

346

Amino Acids

39.31

Weight (kDa)

9.62

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 77 - 123 2.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 80 - 133 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 129 - 171 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 132 - 175 2.6e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 213, 927
AciI CCGC 7 cut(s) 59, 585, 651, 869, 888, 925, 932
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 2 cut(s) 648, 660
AcsI RAATTY 3 cut(s) 80, 306, 718
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 2 cut(s) 128, 1001
AfiI CCNNNNNNNGG 3 cut(s) 424, 522, 931
AgeI ACCGGT 1 cut(s) 447
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AloI GAACNNNNNNTCC 2 cut(s) 967, 999
Alw21I GWGCWC 2 cut(s) 432, 608
Alw26I GTCTC 2 cut(s) 306, 722
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 1 cut(s) 409
AoxI GGCC 4 cut(s) 371, 453, 648, 660
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 9 cut(s) 5, 13, 109, 653, 881, 890, 910, 948, 951
ApoI RAATTY 3 cut(s) 80, 306, 718
AseI ATTAAT 1 cut(s) 597
AsiGI ACCGGT 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 453, 483
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 649, 710, 794
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 483
AvrII CCTAGG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 432
BarI GAAGNNNNNNTAC 4 cut(s) 167, 199, 243, 275
BbsI GAAGAC 2 cut(s) 258, 686
Bbv12I GWGCWC 2 cut(s) 432, 608
BbvI GCAGC 9 cut(s) 17, 25, 96, 640, 877, 893, 922, 960, 963
BccI CCATC 5 cut(s) 121, 200, 348, 372, 596
BceAI ACGGC 1 cut(s) 1018
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 993
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 306, 722
BfaI CTAG 3 cut(s) 99, 272, 846
BfmI CTRYAG 1 cut(s) 684
BfuI GTATCC 1 cut(s) 993
BlnI CCTAGG 1 cut(s) 98
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 248, 477
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 453, 483
BmrFI CCNGG 2 cut(s) 248, 477
BmrI ACTGGG 2 cut(s) 742, 829
BmuI ACTGGG 2 cut(s) 742, 829
BpiI GAAGAC 2 cut(s) 258, 686
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 833, 865
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 2 cut(s) 306, 722
BsaJI CCNNGG 4 cut(s) 98, 246, 476, 645
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 522, 931
Bse118I RCCGGY 1 cut(s) 447
Bse1I ACTGG 5 cut(s) 198, 512, 555, 748, 835
Bse3DI GCAATG 4 cut(s) 225, 242, 777, 1012
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 4 cut(s) 98, 246, 476, 645
BseGI GGATG 2 cut(s) 581, 742
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 424, 522, 931
BseMI GCAATG 4 cut(s) 225, 242, 777, 1012
BseMII CTCAG 3 cut(s) 717, 978, 1005
BseNI ACTGG 5 cut(s) 198, 512, 555, 748, 835
BseSI GKGCMC 1 cut(s) 432
BseX3I CGGCCG 2 cut(s) 648, 660
BseXI GCAGC 9 cut(s) 17, 25, 96, 640, 877, 893, 922, 960, 963
Bsh1236I CGCG 2 cut(s) 213, 927
Bsh1285I CGRYCG 2 cut(s) 651, 663
BshFI GGCC 4 cut(s) 373, 455, 650, 662
BshTI ACCGGT 1 cut(s) 447
BsiEI CGRYCG 2 cut(s) 651, 663
BsiHKAI GWGCWC 2 cut(s) 432, 608
BsiSI CCGG 4 cut(s) 23, 370, 448, 476
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 3 cut(s) 424, 522, 931
BsmAI GTCTC 2 cut(s) 306, 722
BsmFI GGGAC 1 cut(s) 816
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 4 cut(s) 373, 455, 650, 662
Bso31I GGTCTC 2 cut(s) 306, 722
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 432, 608
Bsp143I GATC 6 cut(s) 222, 414, 420, 438, 459, 805
BspACI CCGC 7 cut(s) 59, 585, 651, 869, 888, 925, 932
BspANI GGCC 4 cut(s) 373, 455, 650, 662
BspCNI CTCAG 3 cut(s) 718, 979, 1006
BspFNI CGCG 2 cut(s) 213, 927
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 306, 722
BsrDI GCAATG 4 cut(s) 225, 242, 777, 1012
BsrFI RCCGGY 1 cut(s) 447
BsrI ACTGG 5 cut(s) 198, 512, 555, 748, 835
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 4 cut(s) 98, 246, 476, 645
BssMI GATC 6 cut(s) 222, 414, 420, 438, 459, 805
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 342, 610, 767
Bst6I CTCTTC 3 cut(s) 170, 399, 970
BstACI GRCGYC 1 cut(s) 735
BstAPI GCANNNNNTGC 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 312, 726, 987, 1014
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 581, 742
BstFNI CGCG 2 cut(s) 213, 927
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 6 cut(s) 225, 417, 423, 441, 462, 808
BstMAI GTCTC 2 cut(s) 306, 722
BstMBI GATC 6 cut(s) 222, 414, 420, 438, 459, 805
BstMCI CGRYCG 2 cut(s) 651, 663
BstMWI GCNNNNNNNGC 9 cut(s) 19, 35, 241, 461, 659, 878, 887, 890, 899
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 246, 475
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 2 cut(s) 213, 927
BstV1I GCAGC 9 cut(s) 17, 25, 96, 640, 877, 893, 922, 960, 963
BstV2I GAAGAC 2 cut(s) 258, 686
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BstZI CGGCCG 2 cut(s) 648, 660
BsuI GTATCC 1 cut(s) 993
BsuRI GGCC 4 cut(s) 373, 455, 650, 662
BtsCI GGATG 2 cut(s) 581, 742
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 4 cut(s) 347, 505, 606, 693
CfoI GCGC 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 447
Cfr13I GGNCC 2 cut(s) 453, 483
CseI GACGC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 127, 1000
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 2 cut(s) 520, 979
CviQI GTAC 2 cut(s) 127, 1000
DdeI CTNAG 4 cut(s) 312, 726, 987, 1014
DpnI GATC 6 cut(s) 224, 416, 422, 440, 461, 807
DpnII GATC 6 cut(s) 222, 414, 420, 438, 459, 805
EaeI YGGCCR 2 cut(s) 648, 660
EagI CGGCCG 2 cut(s) 648, 660
Eam1104I CTCTTC 3 cut(s) 170, 399, 970
EarI CTCTTC 3 cut(s) 170, 399, 970
EciI GGCGGA 2 cut(s) 48, 574
EclXI CGGCCG 2 cut(s) 648, 660
Eco130I CCWWGG 1 cut(s) 98
Eco31I GGTCTC 2 cut(s) 306, 722
Eco47I GGWCC 1 cut(s) 483
Eco52I CGGCCG 2 cut(s) 648, 660
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 2 cut(s) 523, 982
FaqI GGGAC 1 cut(s) 816
FatI CATG 2 cut(s) 519, 978
FauI CCCGC 2 cut(s) 895, 932
FbaI TGATCA 1 cut(s) 222
FokI GGATG 2 cut(s) 568, 729
FspBI CTAG 3 cut(s) 99, 272, 846
GlaI GCGC 1 cut(s) 212
HaeIII GGCC 4 cut(s) 373, 455, 650, 662
HapII CCGG 4 cut(s) 23, 370, 448, 476
HgaI GACGC 1 cut(s) 743
HhaI GCGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 2 cut(s) 523, 982
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 3 cut(s) 86, 330, 578
HpaII CCGG 4 cut(s) 23, 370, 448, 476
HphI GGTGA 3 cut(s) 649, 710, 794
Hpy166II GTNNAC 3 cut(s) 430, 701, 785
Hpy188I TCNGA 4 cut(s) 335, 443, 567, 820
Hpy188III TCNNGA 5 cut(s) 418, 499, 538, 628, 986
Hpy8I GTNNAC 3 cut(s) 430, 701, 785
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 3 cut(s) 145, 667, 751
HpyCH4III ACNGT 3 cut(s) 342, 610, 767
HpyCH4V TGCA 6 cut(s) 430, 686, 715, 770, 802, 902
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 35, 241, 461, 659, 878, 887, 890, 899
HpyF3I CTNAG 4 cut(s) 312, 726, 987, 1014
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 2 cut(s) 523, 982
HspAI GCGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 6 cut(s) 222, 414, 420, 438, 459, 805
LmnI GCTCC 3 cut(s) 396, 854, 945
Lsp1109I GCAGC 9 cut(s) 17, 25, 96, 640, 877, 893, 922, 960, 963
MaeI CTAG 3 cut(s) 99, 272, 846
MaeIII GTNAC 2 cut(s) 137, 761
MalI GATC 6 cut(s) 224, 416, 422, 440, 461, 807
MboI GATC 6 cut(s) 222, 414, 420, 438, 459, 805
MboII GAAGA 7 cut(s) 184, 187, 263, 416, 682, 691, 957
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 2 cut(s) 432, 608
MluCI AATT 4 cut(s) 70, 80, 306, 718
MlyI GAGTC 2 cut(s) 339, 572
MmeI TCCRAC 2 cut(s) 313, 642
MseI TTAA 3 cut(s) 573, 597, 1039
MspA1I CMGCKG 4 cut(s) 119, 653, 890, 913
MspI CCGG 4 cut(s) 23, 370, 448, 476
MspR9I CCNGG 2 cut(s) 248, 477
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 213, 927
MwoI GCNNNNNNNGC 9 cut(s) 19, 35, 241, 461, 659, 878, 887, 890, 899
NciI CCSGG 1 cut(s) 477
NdeII GATC 6 cut(s) 222, 414, 420, 438, 459, 805
NlaIII CATG 2 cut(s) 523, 982
NmeAIII GCCGAG 2 cut(s) 481, 626
NspV TTCGAA 1 cut(s) 84
PctI GAATGC 1 cut(s) 904
PfeI GAWTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 447
PleI GAGTC 2 cut(s) 338, 572
PpsI GAGTC 2 cut(s) 338, 572
PshBI ATTAAT 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 2 cut(s) 453, 483
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 414
PvuII CAGCTG 2 cut(s) 119, 913
RsaI GTAC 2 cut(s) 128, 1001
RsaNI GTAC 2 cut(s) 127, 1000
SaqAI TTAA 3 cut(s) 573, 597, 1039
Sau3AI GATC 6 cut(s) 222, 414, 420, 438, 459, 805
Sau96I GGNCC 2 cut(s) 453, 483
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 2 cut(s) 339, 572
ScrFI CCNGG 2 cut(s) 248, 477
SduI GDGCHC 2 cut(s) 432, 608
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 4 cut(s) 70, 80, 306, 718
SsiI CCGC 7 cut(s) 59, 585, 651, 869, 888, 925, 932
SspMI CTAG 3 cut(s) 99, 272, 846
StyD4I CCNGG 2 cut(s) 246, 475
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 342, 610, 767
TaqI TCGA 4 cut(s) 84, 328, 423, 840
TaqII GACCGA 2 cut(s) 500, 746
TasI AATT 4 cut(s) 70, 80, 306, 718
TatI WGTACW 1 cut(s) 126
TauI GCSGC 3 cut(s) 653, 872, 935
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 573, 597, 1039
Tru9I TTAA 3 cut(s) 573, 597, 1039
TscAI CASTG 4 cut(s) 347, 512, 613, 693
TseI GCWGC 9 cut(s) 5, 13, 109, 653, 881, 890, 910, 948, 951
TspDTI ATGAA 1 cut(s) 911
TspRI CASTG 4 cut(s) 347, 512, 613, 693
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 483
VspI ATTAAT 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 3 cut(s) 80, 306, 718
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 3 cut(s) 99, 272, 846
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.