AT5G40360
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004738
Physical Location & Seq
Forward (+)
16144792 .. 16146671
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40360.1

Sequence Viewer

Length: 1080 bp
ATGTATCACCAAAATCTGATTTCATCGACCCCAAACCAAAATTCTAATCCTCACGATTGGGATATTCAAAATCCTTTATTTTCCATACATCCTTCAGCTGAAATACCCTCAAAATATCCCTTTATGGGTATCACTTCTTGCCCAAACACCAATGTTTTTGAGGAATTTCAATATAAAATAACCAACGATCAAAACTTTCCAACGACCTATAACACCCCATTCCCTGTAATATCTGAAGGTATATCATACAATATGCATGATGTTCAAGAGAATACTATGTGTGGTTATACTGCTCACAATCAAGGGCTTATCATTGGTTGTCACGAGCCAGTTCTTGTTCATGCCGTGGTTGAGTCTCAGCAATTTAATGTCCCACAGTCAGAGGATATCAATTTAGTATCTCAGAGTGAGAGGGTCACAGAAGATAAGGTAATGTTCAAAACCGATCATAAGAAGAAAGACATTATTGGCAAAGGGCAATGGACTCCTACTGAAGACGAGTTGTTGGTGAGAATGGTGAAAAGTAAAGGAACGAAAAACTGGACATCAATCGCAAAAATGTTCCAAGGACGAGTAGGAAAACAATGTCGAGAGAGGTGGCATAACCATCTTCGACCAAACATCAAGAAAAATGATTGGAGTGAAGAAGAAGATCAAATACTTATTGAAGTCCACAAGATAGTTGGCAACAAATGGACCGAAATTGCTAAAAGACTTCCTGGACGAAGTGAAAATATTGTTAAAAATCATTGGAATGCTACAAAACGTCGACTACACTCCGTAAGGACTAAGAGAAGTGATGCTTTTTCCCCTCGCAACAATGCCCTTGAAAATTACATAAGGTCTATCACAATCAACAACAATGCCCTTATGAACAGAGAAGTTGATTCTATAACTGCAAACTCGGAAATTGATAGTACCAGATGTGAGAATATTGTTGACGAGGTGATGAATCTGAATCTGCACGCTACAACGTCCGTTTATGTTCCGGAGCAAGCAGTGTTGACATGGGGTTATGATTTTACAAAATGTTATGAACCCATGGATGATACATGGATGCTCATGAATGGTTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

359

Amino Acids

41.6

Weight (kDa)

6.17

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 158 - 204 1.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 161 - 219 3.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 210 - 252 1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 213 - 254 2.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 769
AccIII TCCGGA 1 cut(s) 988
AcsI RAATTY 2 cut(s) 40, 164
AcuI CTGAAG 3 cut(s) 78, 255, 513
AfaI GTAC 1 cut(s) 919
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 6 cut(s) 68, 170, 266, 439, 668, 830
AjnI CCWGG 1 cut(s) 718
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 988
ApoI RAATTY 2 cut(s) 40, 164
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 3 cut(s) 520, 529, 958
AvaII GGWCC 1 cut(s) 696
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 501
BccI CCATC 1 cut(s) 615
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 720
BcoDI GTCTC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 696
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 790, 1047
BpiI GAAGAC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 345, 565, 1041
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 329, 545
Bse3DI GCAATG 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 988
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 3 cut(s) 345, 565, 1041
BseGI GGATG 3 cut(s) 88, 1051, 1062
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 371, 416
BseNI ACTGG 2 cut(s) 329, 545
BsgI GTGCAG 1 cut(s) 947
BsiSI CCGG 1 cut(s) 989
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 760
Bsp13I TCCGGA 1 cut(s) 988
Bsp143I GATC 3 cut(s) 187, 445, 652
Bsp19I CCATGG 1 cut(s) 1041
BspCNI CTCAG 2 cut(s) 370, 415
BspEI TCCGGA 1 cut(s) 988
BspHI TCATGA 1 cut(s) 1062
BsrDI GCAATG 1 cut(s) 485
BsrI ACTGG 2 cut(s) 329, 545
BssECI CCNNGG 3 cut(s) 345, 565, 1041
BssMI GATC 3 cut(s) 187, 445, 652
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 565, 1041
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 966, 996
BstDEI CTNAG 3 cut(s) 357, 402, 789
BstDSI CCRYGG 2 cut(s) 345, 1041
BstF5I GGATG 3 cut(s) 88, 1051, 1062
BstKTI GATC 3 cut(s) 190, 448, 655
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 3 cut(s) 187, 445, 652
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 345, 1041
BtsCI GGATG 3 cut(s) 88, 1051, 1062
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 2 cut(s) 966, 996
CciI TCATGA 1 cut(s) 1062
Cfr13I GGNCC 1 cut(s) 696
Csp6I GTAC 1 cut(s) 918
CviAII CATG 6 cut(s) 257, 341, 1008, 1042, 1053, 1063
CviJI RGCY 3 cut(s) 98, 307, 328
CviKI_1 RGCY 3 cut(s) 98, 307, 328
CviQI GTAC 1 cut(s) 918
DdeI CTNAG 3 cut(s) 357, 402, 789
DpnI GATC 3 cut(s) 189, 447, 654
DpnII GATC 3 cut(s) 187, 445, 652
Eco130I CCWWGG 2 cut(s) 565, 1041
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 696
Eco57I CTGAAG 3 cut(s) 78, 255, 513
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 565, 1041
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 565, 1041
FaeI CATG 6 cut(s) 260, 344, 1011, 1045, 1056, 1066
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FaqI GGGAC 1 cut(s) 356
FatI CATG 6 cut(s) 256, 340, 1007, 1041, 1052, 1062
FblI GTMKAC 1 cut(s) 769
FokI GGATG 3 cut(s) 75, 1058, 1069
HapII CCGG 1 cut(s) 989
Hin1II CATG 6 cut(s) 260, 344, 1011, 1045, 1056, 1066
HincII GTYRAC 3 cut(s) 770, 940, 1005
HindII GTYRAC 3 cut(s) 770, 940, 1005
HinfI GANTC 5 cut(s) 353, 484, 887, 952, 958
HpaII CCGG 1 cut(s) 989
HphI GGTGA 3 cut(s) 520, 529, 958
Hpy166II GTNNAC 4 cut(s) 673, 770, 940, 1005
Hpy188I TCNGA 6 cut(s) 18, 235, 382, 405, 907, 957
Hpy188III TCNNGA 7 cut(s) 53, 266, 323, 590, 625, 989, 1063
Hpy8I GTNNAC 4 cut(s) 673, 770, 940, 1005
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 2 cut(s) 102, 230
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 2 cut(s) 766, 974
HpyCH4V TGCA 3 cut(s) 256, 899, 964
HpyF3I CTNAG 3 cut(s) 357, 402, 789
HpySE526I ACGT 2 cut(s) 766, 974
Hsp92II CATG 6 cut(s) 260, 344, 1011, 1045, 1056, 1066
Kpn2I TCCGGA 1 cut(s) 988
Kzo9I GATC 3 cut(s) 187, 445, 652
LmnI GCTCC 1 cut(s) 991
LpnPI CCDG 7 cut(s) 237, 342, 526, 705, 732, 934, 1002
LweI GCATC 2 cut(s) 790, 1047
MaeII ACGT 2 cut(s) 766, 974
MaeIII GTNAC 2 cut(s) 320, 415
MalI GATC 3 cut(s) 189, 447, 654
MboI GATC 3 cut(s) 187, 445, 652
MboII GAAGA 7 cut(s) 434, 466, 506, 602, 656, 659, 662
MluCI AATT 8 cut(s) 40, 164, 362, 391, 702, 832, 909, 1075
MlyI GAGTC 2 cut(s) 362, 478
MmeI TCCRAC 2 cut(s) 224, 1052
MnlI CCTC 8 cut(s) 60, 118, 154, 376, 405, 588, 822, 937
Mph1103I ATGCAT 1 cut(s) 258
MroI TCCGGA 1 cut(s) 988
MseI TTAA 3 cut(s) 366, 741, 1078
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 1 cut(s) 720
NcoI CCATGG 1 cut(s) 1041
NdeII GATC 3 cut(s) 187, 445, 652
NlaIII CATG 6 cut(s) 260, 344, 1011, 1045, 1056, 1066
NmuCI GTSAC 2 cut(s) 320, 415
NsiI ATGCAT 1 cut(s) 258
PagI TCATGA 1 cut(s) 1062
PctI GAATGC 1 cut(s) 760
PfeI GAWTC 3 cut(s) 887, 952, 958
PfoI TCCNGGA 1 cut(s) 718
PleI GAGTC 2 cut(s) 361, 478
PpsI GAGTC 2 cut(s) 361, 478
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspPI GGNCC 1 cut(s) 696
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 919
RsaNI GTAC 1 cut(s) 918
RseI CAYNNNNRTG 1 cut(s) 753
SalI GTCGAC 1 cut(s) 768
SaqAI TTAA 3 cut(s) 366, 741, 1078
Sau3AI GATC 3 cut(s) 187, 445, 652
Sau96I GGNCC 1 cut(s) 696
SchI GAGTC 2 cut(s) 362, 478
ScrFI CCNGG 1 cut(s) 720
SetI ASST 9 cut(s) 100, 209, 241, 432, 599, 769, 845, 948, 977
SfaNI GCATC 2 cut(s) 790, 1047
SinI GGWCC 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 753
Sse9I AATT 8 cut(s) 40, 164, 362, 391, 702, 832, 909, 1075
SspI AATATT 2 cut(s) 736, 934
StyD4I CCNGG 1 cut(s) 718
StyI CCWWGG 2 cut(s) 565, 1041
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 2 cut(s) 769, 977
TaqI TCGA 4 cut(s) 26, 589, 613, 769
TaqII GACCGA 1 cut(s) 713
TasI AATT 8 cut(s) 40, 164, 362, 391, 702, 832, 909, 1075
TfiI GAWTC 3 cut(s) 887, 952, 958
Tru1I TTAA 3 cut(s) 366, 741, 1078
Tru9I TTAA 3 cut(s) 366, 741, 1078
TscAI CASTG 1 cut(s) 1005
TseFI GTSAC 2 cut(s) 320, 415
Tsp45I GTSAC 2 cut(s) 320, 415
TspDTI ATGAA 6 cut(s) 12, 329, 887, 965, 1050, 1079
TspGWI ACGGA 2 cut(s) 769, 967
TspRI CASTG 1 cut(s) 1005
VpaK11BI GGWCC 1 cut(s) 696
XapI RAATTY 2 cut(s) 40, 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.