Rh2DG663300
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004738
Physical Location & Seq
Forward (+)
88897127 .. 88898390
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG663300.1

Sequence Viewer

Length: 396 bp
ATGGCAGCTACGCAGCCGTTGCCGGAGGCTACACAAGCGACAAGCTGTGTCCAGCTTCCGCCCCTCGTCAATTTCCAAGAATTCGAATCAGCTACGCCTAGGGTTATGCTGCCATCAGCTGATGAGTACTACTCCCGTAACATAACCCCGAAGGAAAATGAGCTTGGCAAGAAGAAGAGGCATTACACTAAAAAAGCCAGTAAAGATGGGCCCCCAGCAATGATCATCAAGGGGCAATGGACGCCCCAGGAAGACAGACTACTGATACAGCTAGTGGGGAGGTATGGTGATAAAAAGTGGTCTCAAATTTCTAAGGTGCTGAAAGGTCGAGTCGGAAAACAGTGTAGAGAAAGATGGCACAACCATCTCCGGCCTGACATTAGGGAGAGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

131

Amino Acids

15.08

Weight (kDa)

9.82

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 77 - 123 1.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 80 - 130 9.7e-18 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 80, 306
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 7 cut(s) 8, 45, 55, 92, 119, 163, 271
AluI AGCT 7 cut(s) 8, 45, 55, 92, 119, 163, 271
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 2 cut(s) 209, 371
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 5, 13, 109
ApoI RAATTY 2 cut(s) 80, 306
AspA2I CCTAGG 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 209, 210
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 84
AvrII CCTAGG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 4 cut(s) 167, 199, 243, 275
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 3 cut(s) 17, 25, 96
BccI CCATC 4 cut(s) 121, 200, 348, 372
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 99, 272
BisI GCNGC 3 cut(s) 6, 14, 110
BlnI CCTAGG 1 cut(s) 98
BlsI GCNGC 3 cut(s) 7, 15, 111
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 209, 210
BmiI GGNNCC 2 cut(s) 211, 212
BmrFI CCNGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu14I TTCGAA 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 98, 246
BsaXI ACNNNNNCTCC 3 cut(s) 271, 301, 377
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 2 cut(s) 225, 242
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 98, 246
BseMI GCAATG 2 cut(s) 225, 242
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 3 cut(s) 17, 25, 96
BseYI CCCAGC 1 cut(s) 214
BshFI GGCC 2 cut(s) 211, 373
BsiSI CCGG 2 cut(s) 23, 370
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 211, 373
Bso31I GGTCTC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 84
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 1 cut(s) 59
BspANI GGCC 2 cut(s) 211, 373
BspLI GGNNCC 2 cut(s) 211, 212
BspT104I TTCGAA 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 225, 242
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 98, 246
BssMI GATC 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 312
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 3 cut(s) 19, 35, 241
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 17, 25, 96
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 211, 373
BtsIMutI CAGTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 209, 210
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 127
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 312
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 98
FaiI YATR 3 cut(s) 107, 143, 285
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 6, 14, 110
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 6, 14, 110
FspBI CTAG 2 cut(s) 99, 272
GluI GCNGC 3 cut(s) 6, 14, 110
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 2 cut(s) 211, 373
HapII CCGG 2 cut(s) 23, 370
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
HinfI GANTC 2 cut(s) 86, 330
HpaII CCGG 2 cut(s) 23, 370
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 35, 241
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 8 cut(s) 36, 65, 211, 228, 233, 260, 383, 387
Lsp1109I GCAGC 3 cut(s) 17, 25, 96
MaeI CTAG 2 cut(s) 99, 272
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 3 cut(s) 184, 187, 263
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 3 cut(s) 70, 80, 306
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 4 cut(s) 19, 74, 171, 273
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 23, 370
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 19, 35, 241
NdeII GATC 1 cut(s) 222
NlaIV GGNNCC 2 cut(s) 211, 212
NspV TTCGAA 1 cut(s) 84
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 7, 15, 111
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 211, 212
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 209, 210
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 3 cut(s) 6, 14, 110
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 209, 210
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 84
Sse9I AATT 3 cut(s) 70, 80, 306
SsiI CCGC 1 cut(s) 59
SspMI CTAG 2 cut(s) 99, 272
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 84, 328
TasI AATT 3 cut(s) 70, 80, 306
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 347
TseI GCWGC 3 cut(s) 5, 13, 109
TspRI CASTG 1 cut(s) 347
XapI RAATTY 2 cut(s) 80, 306
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 2 cut(s) 99, 272
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.