pycom111g02370
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
1407259 .. 1410545
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02370.1

Sequence Viewer

Length: 1536 bp
ATGGAGTACTTGGAAACCAACTTGAGGGAATTAGATAATTTTCCTTTCCTTTCCACCCTTCTCTCTGATTCTTCAAACCCTTTGAAATTGATGAAACCAGAGAATCCACCTCCTTCCACCACCACCAAAACCACCACCATCAATGGGAATATTTATTCTGTCTCTAGATCTTCCCCACCACCACCCAATTCTCCCAAGGCTTTGTTTCATCACCCCAATTCCACCATTCACGGGTTTAACTGGAATTCTCATTCCCATGAGTACAATCTCACCCCAAAGATAAATCATTTCACCACCACTGAGGCCGGTTCTTCATCCAACCCTTTCAGCAAGATTTCAACCACATGCAACAACCTTAATAATCCCTTTGAGCCTTCACCTTATACCGCAAATCATCACCACCATGATTTCATGACATCCGATTGTAGAGAAAGCGAATCCGTGGTGATGCATGGATTTCATGGTGGTGTTAGAGGCTTTTTGGGTTATCAACCCCATCATCAAGAAATTCTTCATGACCAGCAGATGGGGGCAGAGAGCTGTGTGCAGCTCCCACAACTGGTCAATTATGGTGAATTTGGGTCCTCATCAGTTCCGGCGATGCGTTTGCCTTCGGATGATGTGTCATCCAACTCTATCATCGCAGAGATTGAGTTTGGGAGAAGATTCTCAGCTGATGAGAAGAACAAAAGGTTGTGTGCAAGAAGGGCCATTAAAATGCTTCAGAAGAAACCTGATATAATCAAAGGTCAATGGAGTCCCGAGGAAGACAGGTATTTTGTTTTTCTGATTTTAGTCGATTATTTGGTTAATCAGAGTAAAGAAATGTGGAGCGAGGAAGAGGACAAGATACTGATCGAAGCCCACAAGGAAATCGGGAATAGATGGTCAGAAATCGCCAAGATGTTGCCTGGAAGGACGGAGAATACAATTAAGAACCACTGGAATGCAACAAAGAGGAAGCAAAACTCAAAGAGGAAGAGCAACAAGCAGGACTCCAACATTAACAATTACAATGAGAGCTCCATCTTGCAGGACTACATCAGGAGCTTGGTCGGTACTACTGCTACCGATACTACTGCTTCCCCTAACTCTACCGGAACAACGGAGAACAAAGCCGGGCTGTCGTCTGTGGTCTCACCTGATCATCAGTCTGGGATGCACATTGATCAGAACAACATTGTCGAGAGCCCAGACGCGACCAGCTCTGCGAATTGGGATCTCATGGGTTATCGTCCCGAACCTATTGACAGTGAGGCGTCCAACATGAACAACCACATGGGTGTTGGTGTTAATCTTTCTGATTTCGACAAGATTAACATGTTCAATGTTTTTGAAAGTTATGGGCTTGGTGGATACCTGCAGCAGGGAATGGCGAGCAGCAGCACTTCTAGGGTTAAGGATCCGAGCTGCAACATGGCGTATGAACTGCCATTTTTGCCACTGGAGACGAACAACTTTATGCAGGGACATGATAACCATGTCAAGAAAGAGCTGGATATTATGGAGATGCTCCATTTCAAGGGAAATGTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

57.51

Weight (kDa)

5.9

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 274 - 316 3.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 277 - 323 7.7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1368
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 1 cut(s) 1199
AciI CCGC 1 cut(s) 387
AclWI GGATC 3 cut(s) 1227, 1397, 1410
AcsI RAATTY 3 cut(s) 244, 507, 575
AcuI CTGAAG 1 cut(s) 707
AcyI GRCGYC 1 cut(s) 1259
AfaI GTAC 3 cut(s) 8, 263, 1060
AfiI CCNNNNNNNGG 7 cut(s) 24, 144, 231, 526, 559, 1366, 1522
AflIII ACRYGT 1 cut(s) 1320
AgsI TTSAA 6 cut(s) 75, 85, 339, 1327, 1337, 1522
AjnI CCWGG 1 cut(s) 910
AleI CACNNNNGTG 1 cut(s) 1281
AluBI AGCT 8 cut(s) 540, 550, 674, 1023, 1050, 1206, 1410, 1495
AluI AGCT 8 cut(s) 540, 550, 674, 1023, 1050, 1206, 1410, 1495
Alw21I GWGCWC 1 cut(s) 1025
Alw26I GTCTC 3 cut(s) 166, 1141, 1442
AlwI GGATC 3 cut(s) 1227, 1397, 1410
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 2 cut(s) 303, 708
ApeKI GCWGC 5 cut(s) 547, 1363, 1380, 1383, 1410
ApoI RAATTY 3 cut(s) 244, 507, 575
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 582, 708
AsuC2I CCSGG 1 cut(s) 1120
AsuHPI GGTGA 8 cut(s) 203, 262, 283, 369, 389, 457, 584, 1131
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 582
BamHI GGATCC 1 cut(s) 1402
BanII GRGCYC 2 cut(s) 1025, 1193
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 1025
BbvI GCAGC 5 cut(s) 559, 1375, 1392, 1395, 1397
BccI CCATC 5 cut(s) 146, 504, 520, 879, 1034
BcgI CGANNNNNNTGC 4 cut(s) 589, 623, 1061, 1095
BciT130I CCWGG 1 cut(s) 912
BciVI GTATCC 1 cut(s) 1349
BclI TGATCA 2 cut(s) 1144, 1168
BcnI CCSGG 1 cut(s) 1120
BcoDI GTCTC 3 cut(s) 166, 1141, 1442
BfaI CTAG 2 cut(s) 165, 1392
BfmI CTRYAG 1 cut(s) 1361
BfuAI ACCTGC 1 cut(s) 1368
BfuI GTATCC 1 cut(s) 1349
BglII AGATCT 1 cut(s) 167
BisI GCNGC 5 cut(s) 548, 1364, 1381, 1384, 1411
BlsI GCNGC 5 cut(s) 549, 1365, 1382, 1385, 1412
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 912, 1120
Bme18I GGWCC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 2 cut(s) 582, 708
BmiI GGNNCC 2 cut(s) 583, 1404
BmrFI CCNGG 2 cut(s) 912, 1120
BmsI GCATC 4 cut(s) 438, 591, 1149, 1500
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 1466
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 1120
BsaBI GATNNNNATC 1 cut(s) 854
BsaHI GRCGYC 1 cut(s) 1259
BsaI GGTCTC 1 cut(s) 1141
BsaJI CCNNGG 3 cut(s) 195, 441, 762
BsaWI WCCGGW 1 cut(s) 1097
Bsc4I CCNNNNNNNGG 7 cut(s) 24, 144, 231, 526, 559, 1366, 1522
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 4 cut(s) 245, 564, 947, 1449
Bse8I GATNNNNATC 1 cut(s) 854
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 3 cut(s) 195, 441, 762
BseGI GGATG 5 cut(s) 314, 416, 622, 626, 1164
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 7 cut(s) 24, 144, 231, 526, 559, 1366, 1522
BseMII CTCAG 2 cut(s) 291, 684
BseNI ACTGG 4 cut(s) 245, 564, 947, 1449
BseXI GCAGC 5 cut(s) 559, 1375, 1392, 1395, 1397
BsgI GTGCAG 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 1199
BshFI GGCC 2 cut(s) 305, 710
BsiHKAI GWGCWC 1 cut(s) 1025
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 4 cut(s) 306, 596, 1098, 1119
BslFI GGGAC 3 cut(s) 744, 1221, 1482
BslI CCNNNNNNNGG 7 cut(s) 24, 144, 231, 526, 559, 1366, 1522
BsmAI GTCTC 3 cut(s) 166, 1141, 1442
BsmBI CGTCTC 1 cut(s) 1442
BsmFI GGGAC 3 cut(s) 744, 1221, 1482
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 2 cut(s) 305, 710
Bso31I GGTCTC 1 cut(s) 1141
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 2 cut(s) 1025, 1193
Bsp143I GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 305, 710
BspCNI CTCAG 2 cut(s) 292, 683
BspFNI CGCG 1 cut(s) 1199
BspHI TCATGA 2 cut(s) 411, 514
BspLI GGNNCC 2 cut(s) 583, 1404
BspMAI CTGCAG 1 cut(s) 1365
BspMI ACCTGC 1 cut(s) 1368
BspPI GGATC 3 cut(s) 1227, 1397, 1410
BspQI GCTCTTC 1 cut(s) 974
BspTNI GGTCTC 1 cut(s) 1141
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 4 cut(s) 245, 564, 947, 1449
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 195, 441, 762
BssMI GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
BssNI GRCGYC 1 cut(s) 1259
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 1 cut(s) 1253
Bst6I CTCTTC 2 cut(s) 834, 974
BstACI GRCGYC 1 cut(s) 1259
BstC8I GCNNGC 1 cut(s) 1378
BstDEI CTNAG 2 cut(s) 300, 670
BstDSI CCRYGG 1 cut(s) 441
BstENI CCTNNNNNAGG 1 cut(s) 1364
BstF5I GGATG 5 cut(s) 314, 416, 622, 626, 1164
BstFNI CGCG 1 cut(s) 1199
BstKTI GATC 6 cut(s) 170, 858, 1147, 1171, 1222, 1405
BstMAI GTCTC 3 cut(s) 166, 1141, 1442
BstMBI GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1438
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 2 cut(s) 348, 1324
BstSCI CCNGG 2 cut(s) 910, 1118
BstSFI CTRYAG 1 cut(s) 1361
BstUI CGCG 1 cut(s) 1199
BstV1I GCAGC 5 cut(s) 559, 1375, 1392, 1395, 1397
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 3 cut(s) 167, 1219, 1402
BstYI RGATCY 3 cut(s) 167, 1219, 1402
BsuI GTATCC 1 cut(s) 1349
BsuRI GGCC 2 cut(s) 305, 710
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 2 cut(s) 614, 625
BtsCI GGATG 5 cut(s) 314, 416, 622, 626, 1164
BtsIMutI CAGTG 4 cut(s) 297, 940, 1258, 1442
BveI ACCTGC 1 cut(s) 1368
Cac8I GCNNGC 1 cut(s) 1378
CciI TCATGA 2 cut(s) 411, 514
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 582, 708
CseI GACGC 2 cut(s) 1205, 1248
Csp6I GTAC 3 cut(s) 7, 262, 1059
CviQI GTAC 3 cut(s) 7, 262, 1059
DdeI CTNAG 2 cut(s) 300, 670
DpnI GATC 6 cut(s) 169, 857, 1146, 1170, 1221, 1404
DpnII GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
Eam1104I CTCTTC 2 cut(s) 834, 974
EarI CTCTTC 2 cut(s) 834, 974
Ecl136II GAGCTC 1 cut(s) 1023
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 1025, 1193
Eco31I GGTCTC 1 cut(s) 1141
Eco47I GGWCC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 1023
Eco57I CTGAAG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 1023
EcoNI CCTNNNNNAGG 1 cut(s) 1364
EcoO109I RGGNCCY 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 1025, 1193
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 1442
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 3 cut(s) 744, 1221, 1482
FbaI TGATCA 2 cut(s) 1144, 1168
Fnu4HI GCNGC 5 cut(s) 548, 1364, 1381, 1384, 1411
FokI GGATG 5 cut(s) 301, 403, 613, 629, 1171
FriOI GRGCYC 2 cut(s) 1025, 1193
Fsp4HI GCNGC 5 cut(s) 548, 1364, 1381, 1384, 1411
FspBI CTAG 2 cut(s) 165, 1392
GluI GCNGC 5 cut(s) 548, 1364, 1381, 1384, 1411
GsuI CTGGAG 1 cut(s) 1466
HaeIII GGCC 2 cut(s) 305, 710
HapII CCGG 4 cut(s) 306, 596, 1098, 1119
HgaI GACGC 2 cut(s) 1205, 1248
Hin1I GRCGYC 1 cut(s) 1259
HinfI GANTC 6 cut(s) 68, 103, 437, 666, 757, 995
HpaII CCGG 4 cut(s) 306, 596, 1098, 1119
HphI GGTGA 8 cut(s) 203, 262, 283, 369, 389, 457, 584, 1131
HpyAV CCTTC 6 cut(s) 68, 123, 384, 621, 699, 909
HpyCH4III ACNGT 1 cut(s) 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1438
HpyF3I CTNAG 2 cut(s) 300, 670
Hsp92I GRCGYC 1 cut(s) 1259
Ksp22I TGATCA 2 cut(s) 1144, 1168
Kzo9I GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
LguI GCTCTTC 1 cut(s) 974
LmnI GCTCC 5 cut(s) 555, 831, 1028, 1047, 1518
Lsp1109I GCAGC 5 cut(s) 559, 1375, 1392, 1395, 1397
LweI GCATC 4 cut(s) 438, 591, 1149, 1500
MaeI CTAG 2 cut(s) 165, 1392
MalI GATC 6 cut(s) 169, 857, 1146, 1170, 1221, 1404
MboI GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
MflI RGATCY 3 cut(s) 167, 1219, 1402
MhlI GDGCHC 2 cut(s) 1025, 1193
MlyI GAGTC 2 cut(s) 766, 989
MmeI TCCRAC 4 cut(s) 342, 654, 1023, 1287
Mph1103I ATGCAT 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 9 cut(s) 237, 357, 714, 810, 933, 1005, 1293, 1317, 1398
MslI CAYNNNNRTG 6 cut(s) 255, 402, 465, 716, 945, 1281
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 4 cut(s) 306, 596, 1098, 1119
MspR9I CCNGG 2 cut(s) 912, 1120
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 912
MvnI CGCG 1 cut(s) 1199
MwoI GCNNNNNNNGC 2 cut(s) 707, 1438
NciI CCSGG 1 cut(s) 1120
NdeII GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
NlaIV GGNNCC 2 cut(s) 583, 1404
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 2 cut(s) 348, 1324
OliI CACNNNNGTG 1 cut(s) 1281
PagI TCATGA 2 cut(s) 411, 514
PciI ACATGT 1 cut(s) 1320
PciSI GCTCTTC 1 cut(s) 974
PctI GAATGC 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 4 cut(s) 68, 103, 437, 666
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 5 cut(s) 549, 1365, 1382, 1385, 1412
PleI GAGTC 2 cut(s) 765, 989
PpsI GAGTC 2 cut(s) 765, 989
PpuMI RGGWCCY 1 cut(s) 582
PscI ACATGT 1 cut(s) 1320
Psp124BI GAGCTC 1 cut(s) 1025
Psp5II RGGWCCY 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 2 cut(s) 583, 1404
PspPI GGNCC 2 cut(s) 582, 708
PspPPI RGGWCCY 1 cut(s) 582
PstI CTGCAG 1 cut(s) 1365
PsuI RGATCY 3 cut(s) 167, 1219, 1402
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 3 cut(s) 8, 263, 1060
RsaNI GTAC 3 cut(s) 7, 262, 1059
RseI CAYNNNNRTG 6 cut(s) 255, 402, 465, 716, 945, 1281
SacI GAGCTC 1 cut(s) 1025
SapI GCTCTTC 1 cut(s) 974
SaqAI TTAA 9 cut(s) 237, 357, 714, 810, 933, 1005, 1293, 1317, 1398
SatI GCNGC 5 cut(s) 548, 1364, 1381, 1384, 1411
Sau3AI GATC 6 cut(s) 167, 855, 1144, 1168, 1219, 1402
Sau96I GGNCC 2 cut(s) 582, 708
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 2 cut(s) 766, 989
ScrFI CCNGG 2 cut(s) 912, 1120
SduI GDGCHC 2 cut(s) 1025, 1193
SfaNI GCATC 4 cut(s) 438, 591, 1149, 1500
SfcI CTRYAG 1 cut(s) 1361
SinI GGWCC 1 cut(s) 582
SmiMI CAYNNNNRTG 6 cut(s) 255, 402, 465, 716, 945, 1281
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SsiI CCGC 1 cut(s) 387
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 165, 1392
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 2 cut(s) 910, 1118
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 1253
TaqI TCGA 4 cut(s) 798, 858, 1185, 1308
TatI WGTACW 2 cut(s) 6, 261
TfiI GAWTC 4 cut(s) 68, 103, 437, 666
Tru1I TTAA 9 cut(s) 237, 357, 714, 810, 933, 1005, 1293, 1317, 1398
Tru9I TTAA 9 cut(s) 237, 357, 714, 810, 933, 1005, 1293, 1317, 1398
TscAI CASTG 4 cut(s) 304, 947, 1258, 1449
TseI GCWGC 5 cut(s) 547, 1363, 1380, 1383, 1410
TspDTI ATGAA 8 cut(s) 107, 197, 303, 400, 449, 503, 1283, 1440
TspGWI ACGGA 3 cut(s) 430, 935, 1121
TspRI CASTG 4 cut(s) 304, 947, 1258, 1449
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 582
XagI CCTNNNNNAGG 1 cut(s) 1364
XapI RAATTY 3 cut(s) 244, 507, 575
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 2 cut(s) 348, 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 1283
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 165, 1392
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.