MD09G1029700.v1.1
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
1823325 .. 1826602
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1029700.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGGACTACTTGGAAACCAACTTGAGAGAATTAGATAATTTTCCTTTCCTTTCCACCCTTCTCTCCGGTTCTTCAAACCCTCTGAAATTGATGAAACCAGAGAATCCACCTCCTTCCACCACCACCATCAATGGGAATATTTATTCTGTCTCTAGATCTTCCCCACCACCACCCAATTCTCCCAAGGCTTTGTTTCATCACCCCAATTCCACCATTCACGGGTTTAACTGGAATTCTCATTCCCATGAGTACAATCCCACTCCAAAGATAAATCATTTCACCACCACTGAGGCCGGTTCTTCATCCAACCCTTTCAGCAAGATTTCAACCACATGCAACACCCTTAATAATCCCCTTGAGCCTTCACCTTATACCCCAAATCATCACCACCATGATTTCGTGACATCCGATTGTAGAGAAAGCGAATCCGGGGTAATGCATGGATTTCATGGTGGTGTTAGAGGTTTTTTGGGTTATCAACCCCATCATCAAAAAATTCTTCATGACCAGCAGATGGGGGCACAGAGCTGTGTGCAGCTCCCACAACTGGTCAATTATGGTGAATTTGGGTCCTCATCAGTTCCGGCGATTCGTTTGCCTTCGGATGATATGTCATCCAACTCTATCATCGCAGAGATTGAGTTTGGGAGAAGATTCTCAGCTGATGAGAAGAACAAAAGGTTGTGTGCGAGAAGAGCCATTAAAATGCTTCAGAAGAAACCTGATATAATCAAGGGTCAATGGAGTCCCGAGGAAGACAGACACTTGGTGCAATTGGTTGGGCGGTTTGGAATCAAGAAGTGGTCTCAAATTGCAACTCAGCTGACAGGGAGAGTGGGAAAGCAATGTAGAGAAAGATGGCACAACCATCTGCGGCCTGACATTAGGAAAGAAATGTGGAGTGAGGAAGAGGACAAGATACTGATCGAAGCCCACAAGGAAATCGGGAATAGATGGTCAGAAATCGCCAAGATGTTGCCTGGAAGGACGGAGAACACAATTAAGAACCACTGGAATGCAACCAAGAGGAAGCAAAACTCAAAGAGGAAGAGCAACAAGCAGGACTCCAACATTAACAATTACAATGAGAACTCCATCTTGCAGGACTACATCAGGAGCTTGGTCGGTACTACTGCTACTGATACTACTGCTTCCCCTAACTCTACCGGAACAACGGAGAACAAAGCCGGGCTGTCGTCTGTGGTCTCACCTGATCATCAGTCTGGGATACACATTGATCAGAATAACATTGTCGAGAGCCCAGACGCGACCAACTCTGCGAATTGGGATCTCATGGGTTATCGTCCCGAACCTATTGACAGTGAGGCGTCCAACATGAACAACTACATGAGTGTTGGTGTTAATCTTTCTGATTTCGACAAGATTAACATGTTCAATGTTTTTGAAAGTTATGGGCTTGGTGGATACCTGCAGCAGGGAATGGCGAGCAGCAGCACTTCTAGGGTTAAGGATCTGAGCTGCAACATGGAGTATGAACTGCCATTTTTGCCACTGGAGACGAACAACTTTATGCAGGGACATGATAACCATGTCAAGAAAGAGCTGGATATTATGGAGATGCTCCATTTCAAGGGAAAGGTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

60.27

Weight (kDa)

6.8

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 245 - 291 6.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 248 - 305 1.9e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 297 - 339 3.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 300 - 346 2.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1437
AccB7I CCANNNNNTGG 1 cut(s) 514
AccII CGCG 1 cut(s) 1268
AciI CCGC 2 cut(s) 784, 874
AclWI GGATC 2 cut(s) 1296, 1479
AcsI RAATTY 3 cut(s) 232, 495, 563
AcuI CTGAAG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 1328
AdeI CACNNNGTG 1 cut(s) 769
AfaI GTAC 2 cut(s) 251, 1129
AfiI CCNNNNNNNGG 6 cut(s) 132, 219, 514, 547, 1435, 1591
AflIII ACRYGT 1 cut(s) 1389
AgsI TTSAA 5 cut(s) 75, 327, 1396, 1406, 1591
AjnI CCWGG 1 cut(s) 979
AluBI AGCT 7 cut(s) 528, 538, 662, 823, 1119, 1479, 1564
AluI AGCT 7 cut(s) 528, 538, 662, 823, 1119, 1479, 1564
Alw26I GTCTC 4 cut(s) 154, 810, 1210, 1511
AlwI GGATC 2 cut(s) 1296, 1479
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 2 cut(s) 291, 875
ApeKI GCWGC 5 cut(s) 535, 1432, 1449, 1452, 1479
ApoI RAATTY 3 cut(s) 232, 495, 563
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 2 cut(s) 430, 1189
AsuHPI GGTGA 6 cut(s) 191, 271, 357, 377, 572, 1200
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 1 cut(s) 570
BaeGI GKGCMC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 1262
BbsI GAAGAC 1 cut(s) 762
BbvI GCAGC 5 cut(s) 547, 1444, 1461, 1464, 1466
BccI CCATC 7 cut(s) 134, 492, 508, 852, 876, 948, 1103
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 1 cut(s) 981
BciVI GTATCC 2 cut(s) 1221, 1418
BclI TGATCA 2 cut(s) 1213, 1237
BcnI CCSGG 2 cut(s) 430, 1189
BcoDI GTCTC 4 cut(s) 154, 810, 1210, 1511
BfaI CTAG 2 cut(s) 153, 1461
BfmI CTRYAG 1 cut(s) 1430
BfuAI ACCTGC 1 cut(s) 1437
BfuI GTATCC 2 cut(s) 1221, 1418
BglII AGATCT 1 cut(s) 155
BisI GCNGC 6 cut(s) 536, 875, 1433, 1450, 1453, 1480
BlsI GCNGC 6 cut(s) 537, 876, 1434, 1451, 1454, 1481
Bme1390I CCNGG 3 cut(s) 430, 981, 1189
Bme18I GGWCC 1 cut(s) 570
BmeT110I CYCGRG 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 3 cut(s) 430, 981, 1189
BmsI GCATC 1 cut(s) 1569
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 1535
BpuEI CTTGAG 2 cut(s) 43, 377
BpuMI CCSGG 2 cut(s) 430, 1189
BsaBI GATNNNNATC 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 1328
BsaI GGTCTC 2 cut(s) 810, 1210
BsaJI CCNNGG 3 cut(s) 183, 429, 750
BsaWI WCCGGW 2 cut(s) 65, 1166
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 219, 514, 547, 1435, 1591
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 4 cut(s) 233, 552, 1016, 1518
Bse3DI GCAATG 1 cut(s) 851
Bse8I GATNNNNATC 1 cut(s) 923
BseBI CCWGG 1 cut(s) 981
BseDI CCNNGG 3 cut(s) 183, 429, 750
BseGI GGATG 4 cut(s) 302, 404, 610, 614
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 6 cut(s) 132, 219, 514, 547, 1435, 1591
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 4 cut(s) 279, 672, 833, 1466
BseNI ACTGG 4 cut(s) 233, 552, 1016, 1518
BseSI GKGCMC 1 cut(s) 523
BseXI GCAGC 5 cut(s) 547, 1444, 1461, 1464, 1466
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 1268
BshFI GGCC 2 cut(s) 293, 877
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 6 cut(s) 66, 294, 429, 584, 1167, 1188
BslFI GGGAC 3 cut(s) 732, 1290, 1551
BslI CCNNNNNNNGG 6 cut(s) 132, 219, 514, 547, 1435, 1591
BsmAI GTCTC 4 cut(s) 154, 810, 1210, 1511
BsmBI CGTCTC 1 cut(s) 1511
BsmFI GGGAC 3 cut(s) 732, 1290, 1551
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 2 cut(s) 293, 877
Bso31I GGTCTC 2 cut(s) 810, 1210
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 523, 1262
Bsp143I GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
BspACI CCGC 2 cut(s) 784, 874
BspANI GGCC 2 cut(s) 293, 877
BspCNI CTCAG 4 cut(s) 280, 671, 832, 1467
BspFNI CGCG 1 cut(s) 1268
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 1434
BspMI ACCTGC 1 cut(s) 1437
BspPI GGATC 2 cut(s) 1296, 1479
BspQI GCTCTTC 2 cut(s) 688, 1043
BspTNI GGTCTC 2 cut(s) 810, 1210
BsrDI GCAATG 1 cut(s) 851
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 4 cut(s) 233, 552, 1016, 1518
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 183, 429, 750
BssMI GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
BssNI GRCGYC 1 cut(s) 1328
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 1 cut(s) 1322
Bst6I CTCTTC 3 cut(s) 688, 903, 1043
BstACI GRCGYC 1 cut(s) 1328
BstC8I GCNNGC 1 cut(s) 1447
BstDEI CTNAG 4 cut(s) 288, 658, 819, 1475
BstENI CCTNNNNNAGG 1 cut(s) 1433
BstF5I GGATG 4 cut(s) 302, 404, 610, 614
BstFNI CGCG 1 cut(s) 1268
BstKTI GATC 6 cut(s) 158, 927, 1216, 1240, 1291, 1474
BstMAI GTCTC 4 cut(s) 154, 810, 1210, 1511
BstMBI GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
BstMWI GCNNNNNNNGC 2 cut(s) 695, 1507
BstNI CCWGG 1 cut(s) 981
BstNSI RCATGY 2 cut(s) 336, 1393
BstSCI CCNGG 3 cut(s) 428, 979, 1187
BstSFI CTRYAG 1 cut(s) 1430
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 1 cut(s) 1268
BstV1I GCAGC 5 cut(s) 547, 1444, 1461, 1464, 1466
BstV2I GAAGAC 1 cut(s) 762
BstX2I RGATCY 3 cut(s) 155, 1288, 1471
BstYI RGATCY 3 cut(s) 155, 1288, 1471
BsuI GTATCC 2 cut(s) 1221, 1418
BsuRI GGCC 2 cut(s) 293, 877
BtgZI GCGATG 1 cut(s) 613
BtsCI GGATG 4 cut(s) 302, 404, 610, 614
BtsIMutI CAGTG 4 cut(s) 285, 1009, 1327, 1511
BveI ACCTGC 1 cut(s) 1437
Cac8I GCNNGC 1 cut(s) 1447
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 570
CseI GACGC 2 cut(s) 1274, 1317
Csp6I GTAC 2 cut(s) 250, 1128
CviQI GTAC 2 cut(s) 250, 1128
DdeI CTNAG 4 cut(s) 288, 658, 819, 1475
DpnI GATC 6 cut(s) 157, 926, 1215, 1239, 1290, 1473
DpnII GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
DraIII CACNNNGTG 1 cut(s) 769
Eam1104I CTCTTC 3 cut(s) 688, 903, 1043
EarI CTCTTC 3 cut(s) 688, 903, 1043
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 1262
Eco31I GGTCTC 2 cut(s) 810, 1210
Eco47I GGWCC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 695
Eco88I CYCGRG 1 cut(s) 749
EcoNI CCTNNNNNAGG 1 cut(s) 1433
EcoO109I RGGNCCY 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 1262
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 1511
FaqI GGGAC 3 cut(s) 732, 1290, 1551
FbaI TGATCA 2 cut(s) 1213, 1237
Fnu4HI GCNGC 6 cut(s) 536, 875, 1433, 1450, 1453, 1480
FokI GGATG 4 cut(s) 289, 391, 601, 617
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 6 cut(s) 536, 875, 1433, 1450, 1453, 1480
FspBI CTAG 2 cut(s) 153, 1461
GluI GCNGC 6 cut(s) 536, 875, 1433, 1450, 1453, 1480
GsuI CTGGAG 1 cut(s) 1535
HaeIII GGCC 2 cut(s) 293, 877
HapII CCGG 6 cut(s) 66, 294, 429, 584, 1167, 1188
HgaI GACGC 2 cut(s) 1274, 1317
Hin1I GRCGYC 1 cut(s) 1328
HinfI GANTC 7 cut(s) 103, 425, 589, 654, 745, 792, 1064
HpaII CCGG 6 cut(s) 66, 294, 429, 584, 1167, 1188
HphI GGTGA 6 cut(s) 191, 271, 357, 377, 572, 1200
Hpy188I TCNGA 8 cut(s) 84, 409, 604, 714, 961, 1242, 1372, 1476
HpyAV CCTTC 5 cut(s) 68, 123, 372, 609, 978
HpyCH4III ACNGT 1 cut(s) 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 695, 1507
HpyF3I CTNAG 4 cut(s) 288, 658, 819, 1475
Hsp92I GRCGYC 1 cut(s) 1328
Ksp22I TGATCA 2 cut(s) 1213, 1237
Kzo9I GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
LguI GCTCTTC 2 cut(s) 688, 1043
LmnI GCTCC 3 cut(s) 543, 1116, 1587
Lsp1109I GCAGC 5 cut(s) 547, 1444, 1461, 1464, 1466
LweI GCATC 1 cut(s) 1569
MaeI CTAG 2 cut(s) 153, 1461
MaeIII GTNAC 1 cut(s) 400
MalI GATC 6 cut(s) 157, 926, 1215, 1239, 1290, 1473
MboI GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 3 cut(s) 155, 1288, 1471
MhlI GDGCHC 2 cut(s) 523, 1262
MlyI GAGTC 2 cut(s) 754, 1058
MmeI TCCRAC 4 cut(s) 330, 642, 1092, 1356
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 8 cut(s) 225, 345, 702, 1002, 1074, 1362, 1386, 1467
MslI CAYNNNNRTG 5 cut(s) 243, 390, 453, 704, 1014
MspA1I CMGCKG 2 cut(s) 662, 823
MspI CCGG 6 cut(s) 66, 294, 429, 584, 1167, 1188
MspR9I CCNGG 3 cut(s) 430, 981, 1189
MunI CAATTG 1 cut(s) 773
Mva1269I GAATGC 1 cut(s) 1021
MvaI CCWGG 1 cut(s) 981
MvnI CGCG 1 cut(s) 1268
MwoI GCNNNNNNNGC 2 cut(s) 695, 1507
NciI CCSGG 2 cut(s) 430, 1189
NdeII GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 2 cut(s) 336, 1393
PagI TCATGA 1 cut(s) 502
PciI ACATGT 1 cut(s) 1389
PciSI GCTCTTC 2 cut(s) 688, 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PctI GAATGC 1 cut(s) 1021
PfeI GAWTC 5 cut(s) 103, 425, 589, 654, 792
PflMI CCANNNNNTGG 1 cut(s) 514
PkrI GCNGC 6 cut(s) 537, 876, 1434, 1451, 1454, 1481
PleI GAGTC 2 cut(s) 753, 1058
PpsI GAGTC 2 cut(s) 753, 1058
PpuMI RGGWCCY 1 cut(s) 570
PscI ACATGT 1 cut(s) 1389
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 979
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 570
PspPPI RGGWCCY 1 cut(s) 570
PstI CTGCAG 1 cut(s) 1434
PsuI RGATCY 3 cut(s) 155, 1288, 1471
PvuII CAGCTG 2 cut(s) 662, 823
RsaI GTAC 2 cut(s) 251, 1129
RsaNI GTAC 2 cut(s) 250, 1128
RseI CAYNNNNRTG 5 cut(s) 243, 390, 453, 704, 1014
SapI GCTCTTC 2 cut(s) 688, 1043
SaqAI TTAA 8 cut(s) 225, 345, 702, 1002, 1074, 1362, 1386, 1467
SatI GCNGC 6 cut(s) 536, 875, 1433, 1450, 1453, 1480
Sau3AI GATC 6 cut(s) 155, 924, 1213, 1237, 1288, 1471
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 2 cut(s) 754, 1058
ScrFI CCNGG 3 cut(s) 430, 981, 1189
SduI GDGCHC 2 cut(s) 523, 1262
SfaNI GCATC 1 cut(s) 1569
SfcI CTRYAG 1 cut(s) 1430
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 5 cut(s) 243, 390, 453, 704, 1014
SmlI CTYRAG 2 cut(s) 22, 356
SmoI CTYRAG 2 cut(s) 22, 356
SsiI CCGC 2 cut(s) 784, 874
SspI AATATT 1 cut(s) 139
SspMI CTAG 2 cut(s) 153, 1461
StyD4I CCNGG 3 cut(s) 428, 979, 1187
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 1322
TaqI TCGA 3 cut(s) 927, 1254, 1377
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 5 cut(s) 103, 425, 589, 654, 792
Tru1I TTAA 8 cut(s) 225, 345, 702, 1002, 1074, 1362, 1386, 1467
Tru9I TTAA 8 cut(s) 225, 345, 702, 1002, 1074, 1362, 1386, 1467
TscAI CASTG 4 cut(s) 292, 1016, 1327, 1518
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 5 cut(s) 535, 1432, 1449, 1452, 1479
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 7 cut(s) 107, 185, 291, 437, 491, 1352, 1509
TspGWI ACGGA 2 cut(s) 1004, 1190
TspRI CASTG 4 cut(s) 292, 1016, 1327, 1518
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 570
XagI CCTNNNNNAGG 1 cut(s) 1433
XapI RAATTY 3 cut(s) 232, 495, 563
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 2 cut(s) 336, 1393
XspI CTAG 2 cut(s) 153, 1461
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.