Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004738

Physical Location & Seq

Genomic Coordinates Reverse (-)

16176427 .. 16177731

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTGAACCTCAATTATTTGATGTGCCAGTGCTAGAAGGTATCAAAAATACAACCAACGAAATCATGAATCAACTTGAAGATGATAAGATGAAAAAAACTTATGAGAATAAAAAGGAGGCGAGCACAAGCAAATATTTGAAGAAAAGTGACATCACCAAAAAAAGATGGACAGAATCTGAGGACATAAAATTGAAAGAGATGGTGGCACTTGAACCCAAAAAATGGACAAAGGTCGCAAAACATTTTGAAGGACGAACACCAAAACAATGCAGAGAGAGGTGGCATAACCATGCTCGTCCTAACGTTAAGAAAACTACTTGGAGTGAAGAAGAAGATCAAATACTAATTGAAGTACACAAAGTAATTGGTGCCAAATGGATCCAGATCTCAGAGCAACTTCCGGGGAGGAGCTATAACAATGTTAAGAACCATTGGAATACCACAAAGCGTCGGGTGCAAAATAAAAGTGGTCGAACTGTCAACCGTGTCGGCAATAACATCCTTGAAAACTACATAAGGAGTATCACAATCAACAACGATGATGAATCTGATGGTGAACCGACAAACATTGAGAATTATCATGATGACTCTGAAGATATGTTATATGGGGAGATGAATTTGAGTCCAGAGGCTATAACGCAGACCACCAAACCATTGACCGATGCTTCTACAATATCACCTTATATTCCGATGCCAAAAGAAAACTATACTCTGGAGGTTTGTGAATCACTGGAGGACTATCTAGAGCTGCTGCGTTGGTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

30.09

Weight (kDa)

5.82

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	54 - 98	1.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	57 - 114	2e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	106 - 149	4.3e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	108 - 155	8.6e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25230 AT3G27785 AT5G40360 AT5G40430
fragaria_vesca	FvH4_6g51000
malus_domestica	MD09G1029700.v1.1 MD17G1031700.v1.1
prunus_persica	Prupe.3G287600_v2.0.a1 Prupe.3G287700_v2.0.a1
pyrus_communis	pycom111g02370
rosa_chinensis	RchiOBHm_Chr2g0172501
rosa_laevigata	RLG00000022111 RLG00000022112
rosa_multiflora	Rmu_sc0008577.1_g000003 Rmu_sc0008577.1_g000004 Rmu_sc0008577.1_g000005 Rmu_sc0008577.1_g000008
rosa_roxburghii	Rroxscaffold_2G00079790
rosa_rugosa	Rorug02G0559600
rosa_samantha	Rh2AG635300 Rh2AG635400 Rh2BG648800 Rh2BG648900 Rh2CG615400 Rh2CG615500 Rh2CG615600 Rh2DG663300 Rh2DG663400 Rh2DG663500
rosa_wichuraiana	Rw2G052560 Rw2G052570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	225
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	2 cut(s)	376, 389
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	7 cut(s)	80, 142, 196, 215, 251, 353, 509
AluBI	AGCT	2 cut(s)	414, 751
AluI	AGCT	2 cut(s)	414, 751
Alw21I	GWGCWC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	376, 389
AlwNI	CAGNNNCTG	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	751, 754
ApoI	RAATTY	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	4 cut(s)	17, 148, 569, 672
BamHI	GGATCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	371
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	738, 741
BccI	CCATC	3 cut(s)	162, 196, 548
BcnI	CCSGG	1 cut(s)	405
BfaI	CTAG	2 cut(s)	35, 746
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	752, 755
BlsI	GCNGC	2 cut(s)	753, 756
Bme1390I	CCNGG	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	373, 383
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	655, 684
BoxI	GACNNNNGTC	1 cut(s)	233
BpmI	CTGGAG	2 cut(s)	737, 755
BpuMI	CCSGG	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	29, 738
Bse8I	GATNNNNATC	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	501
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	171, 405
BseNI	ACTGG	2 cut(s)	29, 738
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	738, 741
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	337, 381, 387
BspCNI	CTCAG	2 cut(s)	172, 404
BspHI	TCATGA	2 cut(s)	66, 583
BspLI	GGNNCC	2 cut(s)	373, 383
BspPI	GGATC	2 cut(s)	376, 389
BspT107I	GGYRCC	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	29, 738
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	3 cut(s)	337, 381, 387
Bst4CI	ACNGT	2 cut(s)	481, 488
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	180, 391
BstF5I	GGATG	1 cut(s)	501
BstKTI	GATC	3 cut(s)	340, 384, 390
BstMBI	GATC	3 cut(s)	337, 381, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	738, 741
BstX2I	RGATCY	2 cut(s)	381, 387
BstYI	RGATCY	2 cut(s)	381, 387
BtsCI	GGATG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	36, 731
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	2 cut(s)	66, 583
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	3 cut(s)	67, 293, 584
CviJI	RGCY	3 cut(s)	414, 635, 751
CviKI_1	RGCY	3 cut(s)	414, 635, 751
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	180, 391
DpnI	GATC	3 cut(s)	339, 383, 389
DpnII	GATC	3 cut(s)	337, 381, 387
Eco57I	CTGAAG	1 cut(s)	615
FaeI	CATG	3 cut(s)	70, 296, 587
FatI	CATG	3 cut(s)	66, 292, 583
Fnu4HI	GCNGC	2 cut(s)	752, 755
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	752, 755
FspBI	CTAG	2 cut(s)	35, 746
GluI	GCNGC	2 cut(s)	752, 755
GsuI	CTGGAG	2 cut(s)	737, 755
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	70, 296, 587
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	6 cut(s)	70, 176, 548, 590, 625, 728
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	17, 148, 569, 672
Hpy166II	GTNNAC	4 cut(s)	8, 358, 484, 560
Hpy188I	TCNGA	5 cut(s)	181, 394, 553, 595, 693
Hpy188III	TCNNGA	6 cut(s)	67, 385, 584, 629, 716, 746
Hpy8I	GTNNAC	4 cut(s)	8, 358, 484, 560
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	2 cut(s)	32, 245
HpyCH4III	ACNGT	2 cut(s)	481, 488
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	273, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	180, 391
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	70, 296, 587
Kzo9I	GATC	3 cut(s)	337, 381, 387
LmnI	GCTCC	1 cut(s)	411
LpnPI	CCDG	6 cut(s)	42, 398, 417, 642, 701, 719
Lsp1109I	GCAGC	2 cut(s)	738, 741
LweI	GCATC	2 cut(s)	655, 684
MaeI	CTAG	2 cut(s)	35, 746
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	339, 383, 389
MboI	GATC	3 cut(s)	337, 381, 387
MboII	GAAGA	6 cut(s)	92, 154, 341, 344, 347, 608
MflI	RGATCY	2 cut(s)	381, 387
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	6 cut(s)	14, 191, 348, 366, 577, 619
MlyI	GAGTC	2 cut(s)	584, 634
MnlI	CCTC	8 cut(s)	21, 112, 175, 273, 402, 625, 712, 730
MseI	TTAA	3 cut(s)	309, 426, 769
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	337, 381, 387
NlaIII	CATG	3 cut(s)	70, 296, 587
NlaIV	GGNNCC	2 cut(s)	373, 383
NmuCI	GTSAC	1 cut(s)	149
PagI	TCATGA	2 cut(s)	66, 583
PfeI	GAWTC	4 cut(s)	70, 176, 548, 728
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	753, 756
PleI	GAGTC	2 cut(s)	584, 633
PpsI	GAGTC	2 cut(s)	584, 633
PshAI	GACNNNNGTC	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	373, 383
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	381, 387
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	309, 426, 769
SatI	GCNGC	2 cut(s)	752, 755
Sau3AI	GATC	3 cut(s)	337, 381, 387
SchI	GAGTC	2 cut(s)	584, 634
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	9 cut(s)	13, 43, 237, 284, 309, 416, 685, 723, 753
SfaNI	GCATC	2 cut(s)	655, 684
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	6 cut(s)	14, 191, 348, 366, 577, 619
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	2 cut(s)	35, 746
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	481, 488
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	475
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	6 cut(s)	14, 191, 348, 366, 577, 619
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	70, 176, 548, 728
Tru1I	TTAA	3 cut(s)	309, 426, 769
Tru9I	TTAA	3 cut(s)	309, 426, 769
TscAI	CASTG	2 cut(s)	36, 738
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	751, 754
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	4 cut(s)	83, 107, 561, 632
TspRI	CASTG	2 cut(s)	36, 738
Van91I	CCANNNNNTGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	619
XbaI	TCTAGA	1 cut(s)	745
XspI	CTAG	2 cut(s)	35, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.