Prupe.3G287600_v2.0.a1
MYB Family

Transcription factor MYB98-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004738
Physical Location & Seq
Forward (+)
25942702 .. 25944926
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G287600.1

Sequence Viewer

Length: 963 bp
ATGGAGTTGGAAACAAACTTGAAAGAATTAGATAATTTTCCTTTCCTTTCAAGCGTTTTCTCTGATTCTTCAACCCCTATGAAATTGAAACCAGAACATCCTTCCAACACCAACAATGGGATTAATTCCCTACACCCACAACTCTCTTCTTCTTCTTCCTCACCACCACCCAATTGCAAGCCTTTGTTTTCTTCCCTGGTTCCTCATTTTGATCCTCATCATCAGCATCTTCATCTTCATCATCACCATCATCATCAACCGCTTCACGGGTCCCATTTGAATCTGAATTCTCATTCTCATGATGACTTCAAAACCAGTTCTGATCATATCAATCATTTCTCTACCATTGAGGGGTCTTCATCAAACCCCTTCAGTGGGATTTATTACAACACAAATCCTCATGATTTTGTGGCTGTTCCTCTAGCACCTGATGGTATCGCCTTTCATGGTGCTAGGGGGTCCTACTGGGGTGCTCATCATCATCATCATCTGGATGCTCAGGAAATTCCAGATGGCCAGGCGCAGATGGGCCCACAAAGCTGCATACAGCTTCCGCCGTTGATCAATTTTGGAGACTTCGGATCATCATCGCCTATGGCCATAAGTTTGCCTTCCGATGAGGTCACATGCAATAGCAGCAGCAGCACAGAGATTGAGTTTTGCAAGAGACTCTCAGCTGTTGATCAGAAGAAGACCAAGAGGTTGTGTATGAGAAGACCCACCAGTAGTAAGGTACTGCAAAAGAAACCCTCCATCTTCAAAGGCCAATGGACCCCTCAAGAAGACAGACTTTTGGTGCAATTGGTTGAGAGGTTTGGCATTAAGAAGTGGTCTCAAATTGCTAAGATGCTGAGTGGGAGAGTGGGAAAGCAATGTAGAGAAAGATGGCACAACCATCTGCGGCCTGACATTAGGAGTATAGAGGAAAATGAGAGGGAGAATGGAAGTGATGATGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042304 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

321

Amino Acids

36.05

Weight (kDa)

6.73

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 260, 554, 901
AclWI GGATC 2 cut(s) 206, 589
AcoI YGGCCR 2 cut(s) 514, 597
AcsI RAATTY 3 cut(s) 286, 504, 957
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 5 cut(s) 117, 266, 351, 374, 375
AgsI TTSAA 7 cut(s) 22, 51, 72, 88, 280, 310, 760
AjnI CCWGG 2 cut(s) 195, 516
AluBI AGCT 3 cut(s) 540, 550, 677
AluI AGCT 3 cut(s) 540, 550, 677
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 3 cut(s) 567, 661, 837
AlwI GGATC 2 cut(s) 206, 589
AoxI GGCC 5 cut(s) 514, 529, 597, 763, 902
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 540, 636, 639, 642
ApoI RAATTY 3 cut(s) 286, 504, 957
AseI ATTAAT 1 cut(s) 123
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 5 cut(s) 270, 459, 529, 530, 771
AsuHPI GGTGA 2 cut(s) 153, 236
AvaII GGWCC 3 cut(s) 270, 459, 771
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 2 cut(s) 516, 599
BanII GRGCYC 1 cut(s) 533
BbsI GAAGAC 4 cut(s) 348, 698, 721, 789
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 4 cut(s) 527, 648, 651, 654
BccI CCATC 7 cut(s) 255, 425, 506, 520, 761, 879, 903
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 197, 518
BclI TGATCA 3 cut(s) 322, 561, 682
BcoDI GTCTC 3 cut(s) 567, 661, 837
BfaI CTAG 2 cut(s) 422, 453
BisI GCNGC 5 cut(s) 541, 637, 640, 643, 902
BlsI GCNGC 5 cut(s) 542, 638, 641, 644, 903
Bme1390I CCNGG 2 cut(s) 197, 518
Bme18I GGWCC 3 cut(s) 270, 459, 771
BmgT120I GGNCC 5 cut(s) 270, 459, 529, 530, 771
BmiI GGNNCC 6 cut(s) 201, 271, 272, 460, 531, 773
BmrFI CCNGG 2 cut(s) 197, 518
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 3 cut(s) 235, 484, 837
BmuI ACTGGG 1 cut(s) 475
BpiI GAAGAC 4 cut(s) 348, 698, 721, 789
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 762
BsaBI GATNNNNATC 2 cut(s) 216, 586
BsaI GGTCTC 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 266, 351, 374, 375
Bse1I ACTGG 3 cut(s) 315, 470, 723
Bse3DI GCAATG 1 cut(s) 878
Bse8I GATNNNNATC 2 cut(s) 216, 586
BseBI CCWGG 2 cut(s) 197, 518
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 97, 499
BseJI GATNNNNATC 2 cut(s) 216, 586
BseLI CCNNNNNNNGG 5 cut(s) 117, 266, 351, 374, 375
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 3 cut(s) 512, 687, 842
BseNI ACTGG 3 cut(s) 315, 470, 723
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 4 cut(s) 527, 648, 651, 654
BshFI GGCC 5 cut(s) 516, 531, 599, 765, 904
BsiHKAI GWGCWC 1 cut(s) 475
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 5 cut(s) 117, 266, 351, 374, 375
BsmAI GTCTC 3 cut(s) 567, 661, 837
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 5 cut(s) 516, 531, 599, 765, 904
Bso31I GGTCTC 1 cut(s) 837
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 475, 533
Bsp143I GATC 5 cut(s) 211, 322, 561, 581, 682
BspACI CCGC 3 cut(s) 260, 554, 901
BspANI GGCC 5 cut(s) 516, 531, 599, 765, 904
BspCNI CTCAG 3 cut(s) 511, 686, 843
BspHI TCATGA 2 cut(s) 298, 400
BspLI GGNNCC 6 cut(s) 201, 271, 272, 460, 531, 773
BspPI GGATC 2 cut(s) 206, 589
BspTNI GGTCTC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 878
BsrI ACTGG 3 cut(s) 315, 470, 723
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 5 cut(s) 211, 322, 561, 581, 682
Bst2UI CCWGG 2 cut(s) 197, 518
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 4 cut(s) 498, 673, 843, 851
BstF5I GGATG 2 cut(s) 97, 499
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 5 cut(s) 214, 325, 564, 584, 685
BstMAI GTCTC 3 cut(s) 567, 661, 837
BstMBI GATC 5 cut(s) 211, 322, 561, 581, 682
BstMWI GCNNNNNNNGC 3 cut(s) 537, 636, 642
BstNI CCWGG 2 cut(s) 197, 518
BstNSI RCATGY 1 cut(s) 630
BstSCI CCNGG 2 cut(s) 195, 516
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 4 cut(s) 527, 648, 651, 654
BstV2I GAAGAC 4 cut(s) 348, 698, 721, 789
BsuRI GGCC 5 cut(s) 516, 531, 599, 765, 904
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 97, 499
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 179
CciI TCATGA 2 cut(s) 298, 400
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 5 cut(s) 270, 459, 529, 530, 771
Csp6I GTAC 1 cut(s) 734
CviAII CATG 4 cut(s) 299, 401, 446, 627
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 4 cut(s) 498, 673, 843, 851
DpnI GATC 5 cut(s) 213, 324, 563, 583, 684
DpnII GATC 5 cut(s) 211, 322, 561, 581, 682
EaeI YGGCCR 2 cut(s) 514, 597
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 837
Eco47I GGWCC 3 cut(s) 270, 459, 771
Eco57I CTGAAG 1 cut(s) 355
EcoO109I RGGNCCY 2 cut(s) 270, 459
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 195, 516
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 4 cut(s) 302, 404, 449, 630
FalI AAGNNNNNCTT 4 cut(s) 595, 627, 774, 806
FaqI GGGAC 1 cut(s) 256
FatI CATG 4 cut(s) 298, 400, 445, 626
FbaI TGATCA 3 cut(s) 322, 561, 682
Fnu4HI GCNGC 5 cut(s) 541, 637, 640, 643, 902
FokI GGATG 2 cut(s) 84, 506
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 5 cut(s) 541, 637, 640, 643, 902
FspBI CTAG 2 cut(s) 422, 453
GlaI GCGC 1 cut(s) 522
GluI GCNGC 5 cut(s) 541, 637, 640, 643, 902
HaeIII GGCC 5 cut(s) 516, 531, 599, 765, 904
HhaI GCGC 1 cut(s) 523
Hin1II CATG 4 cut(s) 302, 404, 449, 630
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HinfI GANTC 3 cut(s) 65, 280, 669
HphI GGTGA 2 cut(s) 153, 236
Hpy188I TCNGA 6 cut(s) 64, 285, 322, 581, 616, 687
Hpy188III TCNNGA 6 cut(s) 299, 401, 491, 500, 509, 779
HpyAV CCTTC 3 cut(s) 111, 379, 621
HpyCH4V TGCA 6 cut(s) 177, 543, 630, 663, 739, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 537, 636, 642
HpyF3I CTNAG 4 cut(s) 498, 673, 843, 851
Hsp92II CATG 4 cut(s) 302, 404, 449, 630
HspAI GCGC 1 cut(s) 521
KflI GGGWCCC 1 cut(s) 270
Ksp22I TGATCA 3 cut(s) 322, 561, 682
Kzo9I GATC 5 cut(s) 211, 322, 561, 581, 682
Lsp1109I GCAGC 4 cut(s) 527, 648, 651, 654
LweI GCATC 3 cut(s) 235, 484, 837
MaeI CTAG 2 cut(s) 422, 453
MaeIII GTNAC 1 cut(s) 622
MalI GATC 5 cut(s) 213, 324, 563, 583, 684
MboI GATC 5 cut(s) 211, 322, 561, 581, 682
MfeI CAATTG 2 cut(s) 172, 800
MhlI GDGCHC 2 cut(s) 475, 533
MlsI TGGCCA 2 cut(s) 516, 599
MluNI TGGCCA 2 cut(s) 516, 599
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 1 cut(s) 129
Mox20I TGGCCA 2 cut(s) 516, 599
MscI TGGCCA 2 cut(s) 516, 599
MseI TTAA 2 cut(s) 123, 822
MslI CAYNNNNRTG 2 cut(s) 297, 492
Msp20I TGGCCA 2 cut(s) 516, 599
MspA1I CMGCKG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 197, 518
MunI CAATTG 2 cut(s) 172, 800
MvaI CCWGG 2 cut(s) 197, 518
MwoI GCNNNNNNNGC 3 cut(s) 537, 636, 642
NdeII GATC 5 cut(s) 211, 322, 561, 581, 682
NlaIII CATG 4 cut(s) 302, 404, 449, 630
NlaIV GGNNCC 6 cut(s) 201, 271, 272, 460, 531, 773
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 630
PagI TCATGA 2 cut(s) 298, 400
PfeI GAWTC 2 cut(s) 65, 280
PkrI GCNGC 5 cut(s) 542, 638, 641, 644, 903
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
PpuMI RGGWCCY 2 cut(s) 270, 459
PshBI ATTAAT 1 cut(s) 123
Psp5II RGGWCCY 2 cut(s) 270, 459
Psp6I CCWGG 2 cut(s) 195, 516
PspGI CCWGG 2 cut(s) 195, 516
PspN4I GGNNCC 6 cut(s) 201, 271, 272, 460, 531, 773
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 5 cut(s) 270, 459, 529, 530, 771
PspPPI RGGWCCY 2 cut(s) 270, 459
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 2 cut(s) 297, 492
SaqAI TTAA 2 cut(s) 123, 822
SatI GCNGC 5 cut(s) 541, 637, 640, 643, 902
Sau3AI GATC 5 cut(s) 211, 322, 561, 581, 682
Sau96I GGNCC 5 cut(s) 270, 459, 529, 530, 771
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 2 cut(s) 197, 518
SduI GDGCHC 2 cut(s) 475, 533
SetI ASST 8 cut(s) 430, 542, 552, 624, 679, 704, 735, 815
SfaNI GCATC 3 cut(s) 235, 484, 837
SinI GGWCC 3 cut(s) 270, 459, 771
SmiMI CAYNNNNRTG 2 cut(s) 297, 492
SmlI CTYRAG 1 cut(s) 777
SmoI CTYRAG 1 cut(s) 777
SsiI CCGC 3 cut(s) 260, 554, 901
SspMI CTAG 2 cut(s) 422, 453
StyD4I CCNGG 2 cut(s) 195, 516
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 2 cut(s) 65, 280
Tru1I TTAA 2 cut(s) 123, 822
Tru9I TTAA 2 cut(s) 123, 822
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 4 cut(s) 540, 636, 639, 642
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 5 cut(s) 95, 221, 227, 348, 434
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 270, 459, 771
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 3 cut(s) 286, 504, 957
XceI RCATGY 1 cut(s) 630
XspI CTAG 2 cut(s) 422, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.