Rmu_sc0008577.1_g000005
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008577.1
OG0004738
Physical Location & Seq
Forward (+)
19855 .. 20658
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008577.1_g000005.1.cds

Sequence Viewer

Length: 804 bp
atggagttagaagcaagcatcagggaggaaaattttccttttctctctgccctcttctccgggatgaagcagaagcctcatccggggaatctcaacctcaacaccggttttttcaaaccttattcacctgatggtgactacaagccaaacactctctttgaaaacccctctcactttgaaaaccaagccagcagggggattgatctgaattattcagatcaataccaccagaactctcctctcctccgtggtaaccatttcgatggtaccaccgttgagggatcttcatcaaaacccttctgtgggattgatctcgcaaccatggaagggtttaatccttttgacgcatgttacaaccagccatatcatcatcatcatcccaaccagcaagcaaacgatgtcaatgttttcccttatacccccgcagcatcagctgtttcgtttgcagacagccagaaggctgtcatgcatggcggttggggggactacgatgacgctcctcatcatcgtcatcaagaccaccaccagatgcccgatttgcagccgctgcatgtggctgcacaagcggctagctatgtccagcttccgccccttgtcaatttccaagatatcgaatcagctacgcctggggttacgctggccgatgagtactcctgtaacataaccccgttggaaaatgatcttcgcaaaaagaagaggcattatatgaataaaaccagtaaagaggagcgcgaagcaatgatcatcaaggggcaatggacacccggggaagacaggtctactgtgtgttttgttttatattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

30.15

Weight (kDa)

5.58

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 779
AccII CGCG 1 cut(s) 732
AciI CCGC 5 cut(s) 423, 474, 545, 566, 587
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 2 cut(s) 268, 650
AfiI CCNNNNNNNGG 5 cut(s) 83, 195, 302, 303, 327
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 3 cut(s) 115, 161, 179
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 4 cut(s) 434, 573, 583, 620
AluI AGCT 4 cut(s) 434, 573, 583, 620
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 4 cut(s) 425, 541, 547, 557
ApoI RAATTY 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 732
AsuC2I CCSGG 4 cut(s) 61, 84, 765, 766
AsuHPI GGTGA 2 cut(s) 117, 146
AsuNHI GCTAGC 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 764
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 777
BbvI GCAGC 4 cut(s) 437, 534, 544, 553
BccI CCATC 2 cut(s) 125, 257
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 4 cut(s) 61, 84, 765, 766
BfaI CTAG 1 cut(s) 570
BisI GCNGC 6 cut(s) 426, 542, 545, 548, 558, 567
BlsI GCNGC 6 cut(s) 427, 543, 546, 549, 559, 568
BmcAI AGTACT 1 cut(s) 650
Bme1390I CCNGG 5 cut(s) 61, 84, 627, 765, 766
BmeT110I CYCGRG 1 cut(s) 764
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 5 cut(s) 61, 84, 627, 765, 766
BmsI GCATC 3 cut(s) 27, 437, 519
BmtI GCTAGC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 777
BpuMI CCSGG 4 cut(s) 61, 84, 765, 766
BsaBI GATNNNNATC 1 cut(s) 286
BsaJI CCNNGG 6 cut(s) 83, 247, 321, 626, 764, 765
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 195, 302, 303, 327
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 717
Bse3DI GCAATG 2 cut(s) 744, 761
Bse8I GATNNNNATC 1 cut(s) 286
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 6 cut(s) 83, 247, 321, 626, 764, 765
BseGI GGATG 3 cut(s) 69, 79, 376
BseJI GATNNNNATC 1 cut(s) 286
BseLI CCNNNNNNNGG 5 cut(s) 83, 195, 302, 303, 327
BseMI GCAATG 2 cut(s) 744, 761
BseNI ACTGG 1 cut(s) 717
BseRI GAGGAG 4 cut(s) 228, 233, 489, 740
BseXI GCAGC 4 cut(s) 437, 534, 544, 553
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 1 cut(s) 641
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 4 cut(s) 60, 83, 105, 765
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 5 cut(s) 83, 195, 302, 303, 327
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 641
BsoBI CYCGRG 1 cut(s) 764
Bsp143I GATC 6 cut(s) 202, 217, 281, 310, 679, 741
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 5 cut(s) 423, 474, 545, 566, 587
BspANI GGCC 1 cut(s) 641
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 744, 761
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 717
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 6 cut(s) 83, 247, 321, 626, 764, 765
BssMI GATC 6 cut(s) 202, 217, 281, 310, 679, 741
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 2 cut(s) 274, 784
Bst6I CTCTTC 2 cut(s) 59, 689
BstAPI GCANNNNNTGC 1 cut(s) 547
BstC8I GCNNGC 5 cut(s) 16, 190, 390, 571, 639
BstDSI CCRYGG 2 cut(s) 247, 321
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 3 cut(s) 69, 79, 376
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 6 cut(s) 205, 220, 284, 313, 682, 744
BstMBI GATC 6 cut(s) 202, 217, 281, 310, 679, 741
BstMWI GCNNNNNNNGC 5 cut(s) 431, 538, 547, 563, 566
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 2 cut(s) 351, 554
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 5 cut(s) 59, 82, 625, 763, 764
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 437, 534, 544, 553
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 1 cut(s) 641
BtgI CCRYGG 2 cut(s) 247, 321
BtsCI GGATG 3 cut(s) 69, 79, 376
Cac8I GCNNGC 5 cut(s) 16, 190, 390, 571, 639
CaiI CAGNNNCTG 1 cut(s) 547
CfoI GCGC 1 cut(s) 732
Cfr10I RCCGGY 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 764
CseI GACGC 2 cut(s) 353, 503
Csp6I GTAC 2 cut(s) 267, 649
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 5 cut(s) 322, 348, 466, 470, 551
CviQI GTAC 2 cut(s) 267, 649
DpnI GATC 6 cut(s) 204, 219, 283, 312, 681, 743
DpnII GATC 6 cut(s) 202, 217, 281, 310, 679, 741
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 59, 689
EarI CTCTTC 2 cut(s) 59, 689
EciI GGCGGA 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 321
Eco32I GATATC 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 764
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 625
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 5 cut(s) 325, 351, 469, 473, 554
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 321, 347, 465, 469, 550
FauI CCCGC 1 cut(s) 430
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 6 cut(s) 426, 542, 545, 548, 558, 567
FokI GGATG 3 cut(s) 66, 76, 363
Fsp4HI GCNGC 6 cut(s) 426, 542, 545, 548, 558, 567
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 731
GluI GCNGC 6 cut(s) 426, 542, 545, 548, 558, 567
HaeIII GGCC 1 cut(s) 641
HapII CCGG 4 cut(s) 60, 83, 105, 765
HgaI GACGC 2 cut(s) 353, 503
HhaI GCGC 1 cut(s) 732
Hin1II CATG 5 cut(s) 325, 351, 469, 473, 554
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HinfI GANTC 2 cut(s) 88, 614
HpaII CCGG 4 cut(s) 60, 83, 105, 765
HphI GGTGA 2 cut(s) 117, 146
Hpy166II GTNNAC 1 cut(s) 780
Hpy188I TCNGA 2 cut(s) 207, 217
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 780
HpyAV CCTTC 3 cut(s) 307, 320, 451
HpyCH4III ACNGT 2 cut(s) 274, 784
HpyCH4V TGCA 5 cut(s) 446, 469, 541, 550, 560
HpyF10VI GCNNNNNNNGC 5 cut(s) 431, 538, 547, 563, 566
Hsp92II CATG 5 cut(s) 325, 351, 469, 473, 554
HspAI GCGC 1 cut(s) 730
KpnI GGTACC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 6 cut(s) 202, 217, 281, 310, 679, 741
LmnI GCTCC 2 cut(s) 502, 727
Lsp1109I GCAGC 4 cut(s) 437, 534, 544, 553
LweI GCATC 3 cut(s) 27, 437, 519
MaeI CTAG 1 cut(s) 570
MaeIII GTNAC 5 cut(s) 134, 251, 350, 631, 656
MalI GATC 6 cut(s) 204, 219, 283, 312, 681, 743
MboI GATC 6 cut(s) 202, 217, 281, 310, 679, 741
MboII GAAGA 5 cut(s) 46, 276, 674, 706, 782
MflI RGATCY 1 cut(s) 281
MluCI AATT 3 cut(s) 31, 208, 598
MmeI TCCRAC 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 2 cut(s) 333, 802
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 434, 547
MspI CCGG 4 cut(s) 60, 83, 105, 765
MspR9I CCNGG 5 cut(s) 61, 84, 627, 765, 766
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 5 cut(s) 431, 538, 547, 563, 566
NciI CCSGG 4 cut(s) 61, 84, 765, 766
NcoI CCATGG 1 cut(s) 321
NdeII GATC 6 cut(s) 202, 217, 281, 310, 679, 741
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 5 cut(s) 325, 351, 469, 473, 554
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 351, 554
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 88, 614
PfoI TCCNGGA 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 6 cut(s) 427, 543, 546, 549, 559, 568
Psp6I CCWGG 1 cut(s) 625
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 268, 650
RsaNI GTAC 2 cut(s) 267, 649
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 333, 802
SatI GCNGC 6 cut(s) 426, 542, 545, 548, 558, 567
Sau3AI GATC 6 cut(s) 202, 217, 281, 310, 679, 741
ScaI AGTACT 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 61, 84, 627, 765, 766
SetI ASST 8 cut(s) 99, 121, 130, 436, 575, 585, 622, 779
SfaNI GCATC 3 cut(s) 27, 437, 519
SmaI CCCGGG 1 cut(s) 766
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 3 cut(s) 31, 208, 598
SsiI CCGC 5 cut(s) 423, 474, 545, 566, 587
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 5 cut(s) 59, 82, 625, 763, 764
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 274, 784
TaqI TCGA 2 cut(s) 261, 612
TasI AATT 3 cut(s) 31, 208, 598
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 547, 569
TfiI GAWTC 2 cut(s) 88, 614
Tru1I TTAA 2 cut(s) 333, 802
Tru9I TTAA 2 cut(s) 333, 802
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 4 cut(s) 425, 541, 547, 557
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 80, 276, 722
TspGWI ACGGA 1 cut(s) 236
TspMI CCCGGG 1 cut(s) 764
XapI RAATTY 1 cut(s) 31
XceI RCATGY 2 cut(s) 351, 554
XmaI CCCGGG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 570
ZrmI AGTACT 1 cut(s) 650
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.