Rorug02G0559600
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004738
Physical Location & Seq
Forward (+)
68572127 .. 68572764
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0559600.1

Sequence Viewer

Length: 345 bp
ATGAGGCCTACAAGTACAAGCAGTACTACATCCTCAACCACTAGATCAGCACTACTCCATCCATGGAAGTCTCCAGTTCCTTACCTCTTTGGCGGCTTAGCCTTAATGTTACTGCTCATTTTTGTTGCATTGATCATTCTTCTATGGTCATACCACAAATCGCGCTCCTCCAACTCATCAATTGAAGAAGATCATGAAGAGAAGCCAACAAAAGCGATGAACAATACAGTGTTTGATACTGATCAACCAAAGAATATTGTTGTCATAATAAACGCCGGAGAAGAGAAGCCCACGCAGTTAGCCACACCAGTCGCTTCCACTTGCTCTTCTTCTGATCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

114

Amino Acids

12.48

Weight (kDa)

6.26

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 93
AfaI GTAC 2 cut(s) 16, 25
AgsI TTSAA 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 165
BccI CCATC 1 cut(s) 66
BclI TGATCA 3 cut(s) 132, 241, 334
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 74, 308
Bse8I GATNNNNATC 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 29, 58
BseJI GATNNNNATC 1 cut(s) 240
BseNI ACTGG 2 cut(s) 74, 308
BseRI GAGGAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 5 cut(s) 44, 132, 190, 241, 334
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 331
BsrI ACTGG 2 cut(s) 74, 308
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 5 cut(s) 44, 132, 190, 241, 334
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 192, 276, 331
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 29, 58
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 5 cut(s) 47, 135, 193, 244, 337
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 5 cut(s) 44, 132, 190, 241, 334
BstUI CGCG 1 cut(s) 163
BsuRI GGCC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 29, 58
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 15, 24
CviAII CATG 2 cut(s) 63, 194
CviJI RGCY 6 cut(s) 7, 96, 101, 205, 289, 302
CviKI_1 RGCY 6 cut(s) 7, 96, 101, 205, 289, 302
CviQI GTAC 2 cut(s) 15, 24
DdeI CTNAG 1 cut(s) 97
DpnI GATC 5 cut(s) 46, 134, 192, 243, 336
DpnII GATC 5 cut(s) 44, 132, 190, 241, 334
Eam1104I CTCTTC 3 cut(s) 192, 276, 331
EarI CTCTTC 3 cut(s) 192, 276, 331
Eco130I CCWWGG 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 66, 197
FaiI YATR 5 cut(s) 64, 145, 151, 195, 266
FatI CATG 2 cut(s) 62, 193
FbaI TGATCA 3 cut(s) 132, 241, 334
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 16, 45
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 66, 197
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 2 cut(s) 66, 197
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 3 cut(s) 132, 241, 334
Kzo9I GATC 5 cut(s) 44, 132, 190, 241, 334
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 87, 289, 321
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 108
MalI GATC 5 cut(s) 46, 134, 192, 243, 336
MboI GATC 5 cut(s) 44, 132, 190, 241, 334
MboII GAAGA 7 cut(s) 131, 197, 200, 209, 293, 318, 321
MfeI CAATTG 1 cut(s) 180
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 43, 95, 178
MseI TTAA 1 cut(s) 104
MspI CCGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 180
MvnI CGCG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 62
NdeII GATC 5 cut(s) 44, 132, 190, 241, 334
NlaIII CATG 2 cut(s) 66, 197
PagI TCATGA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 95
RsaI GTAC 2 cut(s) 16, 25
RsaNI GTAC 2 cut(s) 15, 24
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 5 cut(s) 44, 132, 190, 241, 334
ScaI AGTACT 1 cut(s) 25
SetI ASST 1 cut(s) 87
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 42
StuI AGGCCT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 229
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 14, 23
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 210, 233
TspRI CASTG 1 cut(s) 234
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.