MD17G1031700.v1.1
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
2288752 .. 2292029
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1031700.v1.1.491

Sequence Viewer

Length: 1509 bp
ATGGAGTACTTGGAAACCAACTTGAGAGAATTAGATAATTTTCCTTTGATTTCCACCCTTCTCTATGGTTCTTCAAACCCTCTAAAATTGATGAAACCAGAAAACCCTCCTCCCACCACCATCAAAACCACTACCACCGATGGGAATCTTTATTCTCTCTCTAGATCCTCCCCATCACCACCCAGTTCTCCTAAGGCTTTGTTTCATCACCCCAATTCCATAAATCATGGGTTTAATCGCATTTCTCATTCCCATGAGTACAATCTCACTCCAAAGACTGATCACTTCACCACCACTGAGGCCGGTTCTTCATCCAACCCCTTCAGCAAGATTTCAACCACATGCAACACCCTTAATAACCCCTTTGAACCTTCACCTTATACCCCAAATTATCACCGCCATCATTTCGTGACATCCGATTGTGGCGAAAGCGAATTGGTTGCGATGCATGGATTTCATGGTGGTGTTAGAGGCTGTTTGGGTTATCCTCCCGACCATCAAGAGATTCCTCATGACCAGCAGATGGGGGCAGAAAGCTGTGTGCAGCTCCCACCATTGGTAATTTATGGTGAATTCGGGTCCTCATCAGCTCCAGCGATGCGTCTGCATTCAGATGATATTCCAAGGCTCTCAGCTGATGAAAAGAAGAACAAAAGGTTGTGTGAGGGAGGAGCCATCAAACTCCTGCACAAGAAACCTGATATAATAAAAGGCCAATGGAGTCCTGAGGAAGACAGGTATTTGCTTTTCCTGATTTTAGTAGATTATTTGGTTAATCACAGTAAAGAAATGTGGAGCGAGGAAGAGGACAAGATACTGATCGAAGCCCACAAGAAAATGGGGAACAGATGGGCAGAAATGGCAAAGATATTGCCTGGGAGAACAGAAAACACCATCAAGAATCACTGGAACGCAACAAAGAGGAAGCAAAACTCAAAAAGGAAGAGCAACAAGCAGGACTCCTCCAATAACAATTACAATGAGAGCTCTATGTTGCAGGATTACATCCGGACCGTGGTCAATAGCACTACTACTGGTACTCCTAGTACTGCTTCCGCCAACTCTACCGGAACTATGGAGAACAAAGCGGTGCTGTCGTCTGTGGTCTCACCGGATCATCAGTCTGGGATGCACATTAATCAGAACAACATTGTCGAGAGCCCAGACGCAACCAACTCCGCGAATTGGGATCTCACGGGTTATCGTCCAGAACCTTTTGACAGTGAGGCCTCCAACATGAACAATCACATGGGTGATGGTGTTACAACTCTTTCTGATTTAGACAAGAGTAACATGTTCAATATTTTTGAAAGCTATGGACTTGGTGGGTACCTGCAGCAGAGAATGGCAAGCAGCAGCACTTCTAGGGTTAAGGATCCGAGCTGCAGCATGGAGTATGAACTGTCATTTTTTCCATTGGAGATGAACAACTTTATGCAGGGACATGATGACCATGTCAAGAAAGAGCTGGATATTATGGAGATGCTCCATTTCAAGGGAAATATGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

56.35

Weight (kDa)

5.99

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 262 - 304 5.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 265 - 311 1.2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1341
Acc65I GGTACC 1 cut(s) 1329
AccB1I GGYRCC 1 cut(s) 1329
AccB7I CCANNNNNTGG 1 cut(s) 523
AccII CGCG 1 cut(s) 1181
AccIII TCCGGA 1 cut(s) 1008
AciI CCGC 4 cut(s) 397, 1056, 1088, 1179
AclWI GGATC 5 cut(s) 159, 1122, 1197, 1370, 1383
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 5 cut(s) 8, 260, 1039, 1048, 1331
AfiI CCNNNNNNNGG 6 cut(s) 141, 523, 556, 1015, 1185, 1495
AflIII ACRYGT 1 cut(s) 1293
AgsI TTSAA 6 cut(s) 75, 336, 368, 1300, 1310, 1495
AjnI CCWGG 1 cut(s) 874
AleI CACNNNNGTG 1 cut(s) 1251
AluBI AGCT 8 cut(s) 537, 547, 590, 635, 987, 1314, 1383, 1468
AluI AGCT 8 cut(s) 537, 547, 590, 635, 987, 1314, 1383, 1468
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 1 cut(s) 1111
AlwI GGATC 5 cut(s) 159, 1122, 1197, 1370, 1383
Aor13HI TCCGGA 1 cut(s) 1008
AoxI GGCC 3 cut(s) 300, 712, 1227
ApeKI GCWGC 6 cut(s) 544, 1336, 1353, 1356, 1383, 1386
ApoI RAATTY 1 cut(s) 572
AseI ATTAAT 1 cut(s) 1137
Asp718I GGTACC 1 cut(s) 1329
AspS9I GGNCC 2 cut(s) 579, 1011
AsuHPI GGTGA 8 cut(s) 168, 200, 280, 366, 386, 581, 1101, 1265
AvaII GGWCC 2 cut(s) 579, 1011
AxyI CCTNAGG 2 cut(s) 192, 726
BamHI GGATCC 1 cut(s) 1375
BanI GGYRCC 1 cut(s) 1329
BanII GRGCYC 2 cut(s) 989, 1163
BbsI GAAGAC 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 6 cut(s) 556, 1348, 1365, 1368, 1370, 1398
BcgI CGANNNNNNTGC 4 cut(s) 422, 456, 586, 620
BciT130I CCWGG 1 cut(s) 876
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 1111
BfaI CTAG 3 cut(s) 162, 1044, 1365
BfmI CTRYAG 2 cut(s) 1334, 1384
BfuAI ACCTGC 1 cut(s) 1341
BisI GCNGC 6 cut(s) 545, 1337, 1354, 1357, 1384, 1387
BlsI GCNGC 6 cut(s) 546, 1338, 1355, 1358, 1385, 1388
BmcAI AGTACT 2 cut(s) 8, 1048
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 2 cut(s) 579, 1011
BmgT120I GGNCC 2 cut(s) 579, 1011
BmiI GGNNCC 4 cut(s) 580, 673, 1331, 1377
BmrFI CCNGG 1 cut(s) 876
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 4 cut(s) 435, 588, 1119, 1473
BmuI ACTGGG 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 1016
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 43
BsaBI GATNNNNATC 2 cut(s) 144, 818
BsaI GGTCTC 1 cut(s) 1111
BsaJI CCNNGG 3 cut(s) 623, 875, 1014
BsaWI WCCGGW 3 cut(s) 1008, 1067, 1111
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 6 cut(s) 141, 523, 556, 1015, 1185, 1495
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 183, 911, 1039
Bse21I CCTNAGG 2 cut(s) 192, 726
Bse8I GATNNNNATC 2 cut(s) 144, 818
BseAI TCCGGA 1 cut(s) 1008
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 3 cut(s) 623, 875, 1014
BseGI GGATG 4 cut(s) 311, 413, 1005, 1134
BseJI GATNNNNATC 2 cut(s) 144, 818
BseLI CCNNNNNNNGG 6 cut(s) 141, 523, 556, 1015, 1185, 1495
BseMII CTCAG 3 cut(s) 288, 645, 717
BseNI ACTGG 3 cut(s) 183, 911, 1039
BseRI GAGGAG 3 cut(s) 99, 684, 952
BseXI GCAGC 6 cut(s) 556, 1348, 1365, 1368, 1370, 1398
BsgI GTGCAG 2 cut(s) 563, 671
Bsh1236I CGCG 1 cut(s) 1181
BshFI GGCC 3 cut(s) 302, 714, 1229
BshNI GGYRCC 1 cut(s) 1329
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 4 cut(s) 303, 1009, 1068, 1112
BslFI GGGAC 1 cut(s) 1455
BslI CCNNNNNNNGG 6 cut(s) 141, 523, 556, 1015, 1185, 1495
BsmAI GTCTC 1 cut(s) 1111
BsmFI GGGAC 1 cut(s) 1455
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 3 cut(s) 302, 714, 1229
Bso31I GGTCTC 1 cut(s) 1111
Bsp1286I GDGCHC 2 cut(s) 989, 1163
Bsp13I TCCGGA 1 cut(s) 1008
Bsp143I GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
BspACI CCGC 4 cut(s) 397, 1056, 1088, 1179
BspANI GGCC 3 cut(s) 302, 714, 1229
BspCNI CTCAG 3 cut(s) 289, 644, 718
BspEI TCCGGA 1 cut(s) 1008
BspFNI CGCG 1 cut(s) 1181
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 580, 673, 1331, 1377
BspMAI CTGCAG 2 cut(s) 1338, 1388
BspMI ACCTGC 1 cut(s) 1341
BspPI GGATC 5 cut(s) 159, 1122, 1197, 1370, 1383
BspQI GCTCTTC 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 1329
BspTNI GGTCTC 1 cut(s) 1111
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 183, 911, 1039
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 623, 875, 1014
BssMI GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 4 cut(s) 782, 1015, 1223, 1404
Bst6I CTCTTC 2 cut(s) 798, 938
BstC8I GCNNGC 1 cut(s) 1351
BstDEI CTNAG 4 cut(s) 192, 297, 631, 726
BstDSI CCRYGG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 311, 413, 1005, 1134
BstFNI CGCG 1 cut(s) 1181
BstKTI GATC 6 cut(s) 167, 283, 822, 1117, 1192, 1378
BstMAI GTCTC 1 cut(s) 1111
BstMBI GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
BstMWI GCNNNNNNNGC 1 cut(s) 860
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 2 cut(s) 345, 1297
BstPAI GACNNNNGTC 1 cut(s) 1016
BstSCI CCNGG 1 cut(s) 874
BstSFI CTRYAG 2 cut(s) 1334, 1384
BstUI CGCG 1 cut(s) 1181
BstV1I GCAGC 6 cut(s) 556, 1348, 1365, 1368, 1370, 1398
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 3 cut(s) 164, 1189, 1375
BstYI RGATCY 3 cut(s) 164, 1189, 1375
Bsu36I CCTNAGG 2 cut(s) 192, 726
BsuRI GGCC 3 cut(s) 302, 714, 1229
BtgI CCRYGG 1 cut(s) 1014
BtgZI GCGATG 2 cut(s) 458, 611
BtsCI GGATG 4 cut(s) 311, 413, 1005, 1134
BtsIMutI CAGTG 3 cut(s) 294, 904, 1228
BveI ACCTGC 1 cut(s) 1341
Cac8I GCNNGC 1 cut(s) 1351
CciI TCATGA 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 579, 1011
CpoI CGGWCCG 1 cut(s) 1011
CseI GACGC 2 cut(s) 590, 1175
Csp6I GTAC 5 cut(s) 7, 259, 1038, 1047, 1330
CspI CGGWCCG 1 cut(s) 1011
CviQI GTAC 5 cut(s) 7, 259, 1038, 1047, 1330
DdeI CTNAG 4 cut(s) 192, 297, 631, 726
DpnI GATC 6 cut(s) 166, 282, 821, 1116, 1191, 1377
DpnII GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
Eam1104I CTCTTC 2 cut(s) 798, 938
EarI CTCTTC 2 cut(s) 798, 938
EciI GGCGGA 1 cut(s) 1045
Ecl136II GAGCTC 1 cut(s) 987
Eco130I CCWWGG 1 cut(s) 623
Eco147I AGGCCT 1 cut(s) 1229
Eco24I GRGCYC 2 cut(s) 989, 1163
Eco31I GGTCTC 1 cut(s) 1111
Eco47I GGWCC 2 cut(s) 579, 1011
Eco53kI GAGCTC 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 307
Eco81I CCTNAGG 2 cut(s) 192, 726
EcoICRI GAGCTC 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 989, 1163
ErhI CCWWGG 1 cut(s) 623
FaqI GGGAC 1 cut(s) 1455
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 545, 1337, 1354, 1357, 1384, 1387
FokI GGATG 4 cut(s) 298, 400, 992, 1141
FriOI GRGCYC 2 cut(s) 989, 1163
Fsp4HI GCNGC 6 cut(s) 545, 1337, 1354, 1357, 1384, 1387
FspBI CTAG 3 cut(s) 162, 1044, 1365
GluI GCNGC 6 cut(s) 545, 1337, 1354, 1357, 1384, 1387
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 3 cut(s) 302, 714, 1229
HapII CCGG 4 cut(s) 303, 1009, 1068, 1112
HgaI GACGC 2 cut(s) 590, 1175
HinfI GANTC 5 cut(s) 145, 505, 721, 901, 959
HpaII CCGG 4 cut(s) 303, 1009, 1068, 1112
HphI GGTGA 8 cut(s) 168, 200, 280, 366, 386, 581, 1101, 1265
Hpy188I TCNGA 5 cut(s) 418, 613, 1143, 1276, 1380
HpyAV CCTTC 3 cut(s) 68, 331, 381
HpyCH4III ACNGT 4 cut(s) 782, 1015, 1223, 1404
HpyF10VI GCNNNNNNNGC 1 cut(s) 860
HpyF3I CTNAG 4 cut(s) 192, 297, 631, 726
Kpn2I TCCGGA 1 cut(s) 1008
KpnI GGTACC 1 cut(s) 1333
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
LguI GCTCTTC 1 cut(s) 938
LmnI GCTCC 5 cut(s) 552, 595, 671, 795, 1491
Lsp1109I GCAGC 6 cut(s) 556, 1348, 1365, 1368, 1370, 1398
LweI GCATC 4 cut(s) 435, 588, 1119, 1473
MaeI CTAG 3 cut(s) 162, 1044, 1365
MaeIII GTNAC 3 cut(s) 409, 1261, 1289
MalI GATC 6 cut(s) 166, 282, 821, 1116, 1191, 1377
MboI GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
MboII GAAGA 6 cut(s) 63, 300, 658, 743, 815, 955
MflI RGATCY 3 cut(s) 164, 1189, 1375
MhlI GDGCHC 2 cut(s) 989, 1163
MlyI GAGTC 2 cut(s) 730, 953
MmeI TCCRAC 2 cut(s) 339, 1257
Mph1103I ATGCAT 1 cut(s) 450
MroI TCCGGA 1 cut(s) 1008
MseI TTAA 5 cut(s) 234, 354, 774, 1137, 1371
MslI CAYNNNNRTG 4 cut(s) 252, 462, 612, 1251
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 4 cut(s) 303, 1009, 1068, 1112
MspR9I CCNGG 1 cut(s) 876
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 1 cut(s) 876
MvnI CGCG 1 cut(s) 1181
MwoI GCNNNNNNNGC 1 cut(s) 860
NdeII GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
NlaIV GGNNCC 4 cut(s) 580, 673, 1331, 1377
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 2 cut(s) 345, 1297
OliI CACNNNNGTG 1 cut(s) 1251
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 1229
PciI ACATGT 1 cut(s) 1293
PciSI GCTCTTC 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 145, 505, 901
PflFI GACNNNGTC 1 cut(s) 1454
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 6 cut(s) 546, 1338, 1355, 1358, 1385, 1388
PleI GAGTC 2 cut(s) 729, 953
PpsI GAGTC 2 cut(s) 729, 953
PpuMI RGGWCCY 1 cut(s) 579
PscI ACATGT 1 cut(s) 1293
PshAI GACNNNNGTC 1 cut(s) 1016
PshBI ATTAAT 1 cut(s) 1137
Psp124BI GAGCTC 1 cut(s) 989
Psp5II RGGWCCY 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 4 cut(s) 580, 673, 1331, 1377
PspPI GGNCC 2 cut(s) 579, 1011
PspPPI RGGWCCY 1 cut(s) 579
PstI CTGCAG 2 cut(s) 1338, 1388
PsuI RGATCY 3 cut(s) 164, 1189, 1375
PsyI GACNNNGTC 1 cut(s) 1454
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 5 cut(s) 8, 260, 1039, 1048, 1331
RsaNI GTAC 5 cut(s) 7, 259, 1038, 1047, 1330
RseI CAYNNNNRTG 4 cut(s) 252, 462, 612, 1251
Rsr2I CGGWCCG 1 cut(s) 1011
RsrII CGGWCCG 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 989
SapI GCTCTTC 1 cut(s) 938
SaqAI TTAA 5 cut(s) 234, 354, 774, 1137, 1371
SatI GCNGC 6 cut(s) 545, 1337, 1354, 1357, 1384, 1387
Sau3AI GATC 6 cut(s) 164, 280, 819, 1114, 1189, 1375
Sau96I GGNCC 2 cut(s) 579, 1011
ScaI AGTACT 2 cut(s) 8, 1048
SchI GAGTC 2 cut(s) 730, 953
ScrFI CCNGG 1 cut(s) 876
SduI GDGCHC 2 cut(s) 989, 1163
SfaNI GCATC 4 cut(s) 435, 588, 1119, 1473
SfcI CTRYAG 2 cut(s) 1334, 1384
SinI GGWCC 2 cut(s) 579, 1011
SmiMI CAYNNNNRTG 4 cut(s) 252, 462, 612, 1251
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SseBI AGGCCT 1 cut(s) 1229
SsiI CCGC 4 cut(s) 397, 1056, 1088, 1179
SspI AATATT 1 cut(s) 1303
SspMI CTAG 3 cut(s) 162, 1044, 1365
SstI GAGCTC 1 cut(s) 989
StuI AGGCCT 1 cut(s) 1229
StyD4I CCNGG 1 cut(s) 874
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 4 cut(s) 782, 1015, 1223, 1404
TaqI TCGA 2 cut(s) 822, 1155
TatI WGTACW 3 cut(s) 6, 258, 1046
TfiI GAWTC 3 cut(s) 145, 505, 901
Tru1I TTAA 5 cut(s) 234, 354, 774, 1137, 1371
Tru9I TTAA 5 cut(s) 234, 354, 774, 1137, 1371
TscAI CASTG 3 cut(s) 301, 911, 1228
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 6 cut(s) 544, 1336, 1353, 1356, 1383, 1386
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 8 cut(s) 107, 194, 300, 446, 654, 1253, 1413, 1439
TspRI CASTG 3 cut(s) 301, 911, 1228
Tth111I GACNNNGTC 1 cut(s) 1454
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 2 cut(s) 579, 1011
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 1 cut(s) 572
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 2 cut(s) 345, 1297
XspI CTAG 3 cut(s) 162, 1044, 1365
ZrmI AGTACT 2 cut(s) 8, 1048
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.