Rmu_sc0008577.1_g000004
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008577.1
OG0004738
Physical Location & Seq
Forward (+)
16287 .. 16937
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008577.1_g000004.1.cds

Sequence Viewer

Length: 651 bp
atgtggagcgaagaagaggataagatcctgatcgaggtgcacaaacagatcggaaaccggtgggccgagatcgccaagaggcttccggggaggaccgagaatactatcaagaaccactggaacgccaccatgaggaagcgatacctcaaaagaaaactgactaccagtatcaatcggaacattaaggactcctccgccagctacattaatgagagcactgtcctgtccaactacatcaagagcgtggtgaaatcctcggccgctgcttcggccgaaaagaagaaggggaagactgcagtggtgtatggtgaacaatcaagtctgcaaaatttacctgagaccgacgtctatcatccccagtttgagaagggtaacggtgcaatggtgtatggtgaacaatcaacaagtttgcacgatctacctatgtccgaagtctatcgtccccagttcgagcctagctcctacaatatggaatgggcggcttcggtggcagcccccgctgctatgaatgcaaacaagcagctgaacaactcccgcgtggaggcgactatggggagcagcagctcttatctctcttctaacagaaccatgtatcctgagttctacgggtacggcaatggggctgagaagcttgataaaactcccttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

216

Amino Acids

24.31

Weight (kDa)

9.19

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccII CGCG 1 cut(s) 537
AciI CCGC 5 cut(s) 195, 261, 479, 498, 535
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 2 cut(s) 258, 270
AcsI RAATTY 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 3 cut(s) 34, 132, 541
AgeI ACCGGT 1 cut(s) 57
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 5 cut(s) 201, 459, 523, 564, 631
AluI AGCT 5 cut(s) 201, 459, 523, 564, 631
Alw21I GWGCWC 2 cut(s) 42, 218
Alw26I GTCTC 1 cut(s) 332
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 1 cut(s) 19
AoxI GGCC 3 cut(s) 63, 258, 270
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 6 cut(s) 263, 491, 500, 520, 558, 561
ApoI RAATTY 1 cut(s) 328
AseI ATTAAT 1 cut(s) 207
AsiGI ACCGGT 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 63, 93
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 259, 320, 404
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 2 cut(s) 42, 218
BbvI GCAGC 6 cut(s) 250, 487, 503, 532, 570, 573
BceAI ACGGC 1 cut(s) 628
BciVI GTATCC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 8 cut(s) 261, 264, 480, 492, 501, 521, 559, 562
BlsI GCNGC 8 cut(s) 262, 265, 481, 493, 502, 522, 560, 563
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 63, 93
BmrFI CCNGG 1 cut(s) 87
BmrI ACTGGG 2 cut(s) 352, 439
BmuI ACTGGG 2 cut(s) 352, 439
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 86, 255
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 132, 541
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 4 cut(s) 122, 165, 358, 445
Bse3DI GCAATG 2 cut(s) 387, 622
Bse8I GATNNNNATC 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 86, 255
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 3 cut(s) 34, 132, 541
BseMI GCAATG 2 cut(s) 387, 622
BseMII CTCAG 3 cut(s) 327, 588, 615
BseNI ACTGG 4 cut(s) 122, 165, 358, 445
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 42
BseX3I CGGCCG 2 cut(s) 258, 270
BseXI GCAGC 6 cut(s) 250, 487, 503, 532, 570, 573
Bsh1236I CGCG 1 cut(s) 537
Bsh1285I CGRYCG 2 cut(s) 261, 273
BshFI GGCC 3 cut(s) 65, 260, 272
BshTI ACCGGT 1 cut(s) 57
BsiEI CGRYCG 2 cut(s) 261, 273
BsiHKAI GWGCWC 2 cut(s) 42, 218
BsiSI CCGG 2 cut(s) 58, 86
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 3 cut(s) 34, 132, 541
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 3 cut(s) 65, 260, 272
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 42, 218
Bsp143I GATC 5 cut(s) 24, 30, 48, 69, 415
BspACI CCGC 5 cut(s) 195, 261, 479, 498, 535
BspANI GGCC 3 cut(s) 65, 260, 272
BspCNI CTCAG 3 cut(s) 328, 589, 616
BspFNI CGCG 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 2 cut(s) 387, 622
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 4 cut(s) 122, 165, 358, 445
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 86, 255
BssMI GATC 5 cut(s) 24, 30, 48, 69, 415
BssNI GRCGYC 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 220, 377
Bst6I CTCTTC 2 cut(s) 9, 580
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 336, 597, 624
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 537
BstKTI GATC 5 cut(s) 27, 33, 51, 72, 418
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 5 cut(s) 24, 30, 48, 69, 415
BstMCI CGRYCG 2 cut(s) 261, 273
BstMWI GCNNNNNNNGC 6 cut(s) 71, 269, 488, 497, 500, 509
BstPAI GACNNNNGTC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 42
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 6 cut(s) 250, 487, 503, 532, 570, 573
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 24
BstYI RGATCY 1 cut(s) 24
BstZI CGGCCG 2 cut(s) 258, 270
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 3 cut(s) 65, 260, 272
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 115, 216, 303
Cac8I GCNNGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 63, 93
Csp6I GTAC 1 cut(s) 610
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 2 cut(s) 130, 589
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 3 cut(s) 336, 597, 624
DpnI GATC 5 cut(s) 26, 32, 50, 71, 417
DpnII GATC 5 cut(s) 24, 30, 48, 69, 415
EaeI YGGCCR 2 cut(s) 258, 270
EagI CGGCCG 2 cut(s) 258, 270
Eam1104I CTCTTC 2 cut(s) 9, 580
EarI CTCTTC 2 cut(s) 9, 580
EciI GGCGGA 1 cut(s) 184
EclXI CGGCCG 2 cut(s) 258, 270
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 93
Eco52I CGGCCG 2 cut(s) 258, 270
EcoNI CCTNNNNNAGG 1 cut(s) 32
FaeI CATG 2 cut(s) 133, 592
FaiI YATR 8 cut(s) 131, 306, 390, 425, 470, 506, 551, 590
FaqI GGGAC 1 cut(s) 426
FatI CATG 2 cut(s) 129, 588
FauI CCCGC 2 cut(s) 505, 542
Fnu4HI GCNGC 8 cut(s) 261, 264, 480, 492, 501, 521, 559, 562
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 8 cut(s) 261, 264, 480, 492, 501, 521, 559, 562
FspBI CTAG 1 cut(s) 456
GluI GCNGC 8 cut(s) 261, 264, 480, 492, 501, 521, 559, 562
HaeIII GGCC 3 cut(s) 65, 260, 272
HapII CCGG 2 cut(s) 58, 86
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 2 cut(s) 133, 592
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 1 cut(s) 188
HpaII CCGG 2 cut(s) 58, 86
HphI GGTGA 3 cut(s) 259, 320, 404
Hpy166II GTNNAC 3 cut(s) 40, 311, 395
Hpy188I TCNGA 3 cut(s) 53, 177, 430
Hpy188III TCNNGA 4 cut(s) 28, 109, 238, 596
Hpy8I GTNNAC 3 cut(s) 40, 311, 395
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 277, 361
HpyCH4III ACNGT 2 cut(s) 220, 377
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 6 cut(s) 40, 296, 325, 380, 412, 512
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 269, 488, 497, 500, 509
HpyF3I CTNAG 3 cut(s) 336, 597, 624
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 2 cut(s) 133, 592
Kzo9I GATC 5 cut(s) 24, 30, 48, 69, 415
LmnI GCTCC 3 cut(s) 6, 464, 555
Lsp1109I GCAGC 6 cut(s) 250, 487, 503, 532, 570, 573
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 371
MalI GATC 5 cut(s) 26, 32, 50, 71, 417
MboI GATC 5 cut(s) 24, 30, 48, 69, 415
MboII GAAGA 5 cut(s) 23, 26, 292, 301, 567
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 42, 218
MluCI AATT 1 cut(s) 328
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 9 cut(s) 10, 28, 72, 84, 126, 155, 202, 265, 535
MseI TTAA 3 cut(s) 183, 207, 649
MspA1I CMGCKG 3 cut(s) 263, 500, 523
MspI CCGG 2 cut(s) 58, 86
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 514
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 6 cut(s) 71, 269, 488, 497, 500, 509
NciI CCSGG 1 cut(s) 87
NdeII GATC 5 cut(s) 24, 30, 48, 69, 415
NlaIII CATG 2 cut(s) 133, 592
NmeAIII GCCGAG 2 cut(s) 91, 236
PctI GAATGC 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 8 cut(s) 262, 265, 481, 493, 502, 522, 560, 563
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PshAI GACNNNNGTC 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 207
PspPI GGNCC 2 cut(s) 63, 93
PsrI GAACNNNNNNTAC 2 cut(s) 584, 616
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 183, 207, 649
SatI GCNGC 8 cut(s) 261, 264, 480, 492, 501, 521, 559, 562
Sau3AI GATC 5 cut(s) 24, 30, 48, 69, 415
Sau96I GGNCC 2 cut(s) 63, 93
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 2 cut(s) 42, 218
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 93
Sse9I AATT 1 cut(s) 328
SsiI CCGC 5 cut(s) 195, 261, 479, 498, 535
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 220, 377
TaiI ACGT 1 cut(s) 348
TaqI TCGA 2 cut(s) 33, 450
TaqII GACCGA 2 cut(s) 110, 356
TasI AATT 1 cut(s) 328
TauI GCSGC 2 cut(s) 263, 482
Tru1I TTAA 3 cut(s) 183, 207, 649
Tru9I TTAA 3 cut(s) 183, 207, 649
TscAI CASTG 3 cut(s) 122, 223, 303
TseI GCWGC 6 cut(s) 263, 491, 500, 520, 558, 561
TspDTI ATGAA 1 cut(s) 521
TspRI CASTG 3 cut(s) 122, 223, 303
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 93
VspI ATTAAT 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 328
XspI CTAG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.