Rmu_sc0008577.1_g000008
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008577.1
OG0004738
Physical Location & Seq
Forward (+)
24291 .. 25043
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008577.1_g000008.1.cds

Sequence Viewer

Length: 753 bp
atgtggagcgaagaagaggacaagatcctcattgaggcgcacaaacagatcggaaaccggtgggccgagatagccaagaggcttccggggaggacggagaacactatcaagaaccactggaacgccaccaagaggaagcgatacgcgaagagaaaactgactagcactatcaatttgaacgtcaaggaatcctctgccagcatacctattaatgagagtactctgctgtccaaatacatcaagagcatggcgagatcctcggccactgcttccgccgaaaagaagaagggtaagtctgcagtagtgtctggtgaatcaagtccgcaaagtttagctgagtccgacgtctatcgtccccagcttgagaagggtaagattgcagtggtgaatggtgataaatcaacaagtttgcatgatctacctgagtccgaagtctatcgtccccagttcgagaccagccactacgatatggaatgggcggcttcggtggcggctgccgccgctgtgaatgcaaacaagcagctgaacaactccagcgtagcggcgactatggggagcattagctcttatatctcttctgacagaaccatgtatcctgagtttaacgggtacgggaatgggagtcatactggcatgcagaccaaagataaggttcgtctctctttggagatgaactgtcttatgcaggagcaggctcacttgaagaaaccagatgtggatttgatggagatgatccgtggaactcgcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006935 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010183 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042304 GO:0042330 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048229 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0050918 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051704 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
ko04151 ko05166 map04151 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

250

Amino Acids

27.78

Weight (kDa)

9.32

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccII CGCG 1 cut(s) 146
AciI CCGC 7 cut(s) 273, 323, 479, 491, 498, 501, 542
AclWI GGATC 3 cut(s) 19, 249, 727
AcoI YGGCCR 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 2 cut(s) 220, 611
AfiI CCNNNNNNNGG 2 cut(s) 34, 132
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 2 cut(s) 178, 703
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 4 cut(s) 335, 361, 523, 564
AluI AGCT 4 cut(s) 335, 361, 523, 564
Alw26I GTCTC 2 cut(s) 446, 662
AlwI GGATC 3 cut(s) 19, 249, 727
AoxI GGCC 2 cut(s) 63, 261
ApeKI GCWGC 2 cut(s) 494, 520
AseI ATTAAT 1 cut(s) 210
AsiGI ACCGGT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 323, 397, 404
BbvI GCAGC 2 cut(s) 481, 532
BccI CCATC 1 cut(s) 718
BciVI GTATCC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 446, 662
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 297
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 7 cut(s) 480, 492, 495, 498, 501, 521, 543
BlsI GCNGC 7 cut(s) 481, 493, 496, 499, 502, 522, 544
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 439
BmuI ACTGGG 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 86, 258, 736
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 132
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 3 cut(s) 122, 445, 634
BseDI CCNNGG 3 cut(s) 86, 258, 736
BseLI CCNNNNNNNGG 2 cut(s) 34, 132
BseMII CTCAG 3 cut(s) 327, 414, 588
BseNI ACTGG 3 cut(s) 122, 445, 634
BseXI GCAGC 2 cut(s) 481, 532
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 65, 263
BshTI ACCGGT 1 cut(s) 57
BsiSI CCGG 2 cut(s) 58, 86
BslFI GGGAC 2 cut(s) 339, 426
BslI CCNNNNNNNGG 2 cut(s) 34, 132
BsmAI GTCTC 2 cut(s) 446, 662
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 2 cut(s) 339, 426
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 2 cut(s) 65, 263
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 5 cut(s) 24, 48, 254, 415, 732
BspACI CCGC 7 cut(s) 273, 323, 479, 491, 498, 501, 542
BspANI GGCC 2 cut(s) 65, 263
BspCNI CTCAG 3 cut(s) 328, 415, 589
BspFNI CGCG 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 3 cut(s) 19, 249, 727
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 3 cut(s) 122, 445, 634
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 86, 258, 736
BssMI GATC 5 cut(s) 24, 48, 254, 415, 732
BssNI GRCGYC 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 3 cut(s) 9, 143, 580
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 3 cut(s) 199, 635, 693
BstDEI CTNAG 3 cut(s) 336, 423, 597
BstDSI CCRYGG 1 cut(s) 736
BstENI CCTNNNNNAGG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 5 cut(s) 27, 51, 257, 418, 735
BstMAI GTCTC 2 cut(s) 446, 662
BstMBI GATC 5 cut(s) 24, 48, 254, 415, 732
BstMWI GCNNNNNNNGC 5 cut(s) 71, 488, 497, 500, 509
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 481, 532
BstX2I RGATCY 2 cut(s) 24, 254
BstYI RGATCY 2 cut(s) 24, 254
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 2 cut(s) 65, 263
BtgI CCRYGG 1 cut(s) 736
BtsI GCAGTG 2 cut(s) 264, 387
BtsIMutI CAGTG 3 cut(s) 115, 264, 387
Cac8I GCNNGC 3 cut(s) 199, 635, 693
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 219, 610
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 4 cut(s) 247, 413, 589, 634
CviQI GTAC 2 cut(s) 219, 610
DdeI CTNAG 3 cut(s) 336, 423, 597
DpnI GATC 5 cut(s) 26, 50, 256, 417, 734
DpnII GATC 5 cut(s) 24, 48, 254, 415, 732
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 3 cut(s) 9, 143, 580
EarI CTCTTC 3 cut(s) 9, 143, 580
EciI GGCGGA 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 4 cut(s) 250, 416, 592, 637
FaqI GGGAC 2 cut(s) 339, 426
FatI CATG 4 cut(s) 246, 412, 588, 633
Fnu4HI GCNGC 7 cut(s) 480, 492, 495, 498, 501, 521, 543
Fsp4HI GCNGC 7 cut(s) 480, 492, 495, 498, 501, 521, 543
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 39
GluI GCNGC 7 cut(s) 480, 492, 495, 498, 501, 521, 543
GsaI CCCAGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 517
HaeIII GGCC 2 cut(s) 65, 263
HapII CCGG 2 cut(s) 58, 86
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 4 cut(s) 250, 416, 592, 637
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 5 cut(s) 188, 314, 338, 425, 622
HpaII CCGG 2 cut(s) 58, 86
HphI GGTGA 3 cut(s) 323, 397, 404
Hpy188I TCNGA 4 cut(s) 53, 343, 430, 580
Hpy188III TCNNGA 4 cut(s) 109, 241, 451, 596
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 280, 361
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 2 cut(s) 180, 345
HpyCH4V TGCA 6 cut(s) 299, 380, 412, 512, 637, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 488, 497, 500, 509
HpyF3I CTNAG 3 cut(s) 336, 423, 597
HpySE526I ACGT 2 cut(s) 180, 345
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 4 cut(s) 250, 416, 592, 637
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 5 cut(s) 24, 48, 254, 415, 732
LmnI GCTCC 3 cut(s) 6, 555, 688
Lsp1109I GCAGC 2 cut(s) 481, 532
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 180, 345
MalI GATC 5 cut(s) 26, 50, 256, 417, 734
MboI GATC 5 cut(s) 24, 48, 254, 415, 732
MboII GAAGA 6 cut(s) 23, 26, 160, 295, 567, 715
MflI RGATCY 2 cut(s) 24, 254
MluCI AATT 1 cut(s) 172
MlyI GAGTC 3 cut(s) 347, 434, 631
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 8 cut(s) 10, 28, 38, 72, 84, 126, 202, 268
MseI TTAA 3 cut(s) 210, 603, 751
MspA1I CMGCKG 2 cut(s) 503, 523
MspI CCGG 2 cut(s) 58, 86
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 514
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 71, 488, 497, 500, 509
NciI CCSGG 1 cut(s) 87
NdeII GATC 5 cut(s) 24, 48, 254, 415, 732
NlaIII CATG 4 cut(s) 250, 416, 592, 637
NmeAIII GCCGAG 2 cut(s) 91, 239
NspI RCATGY 1 cut(s) 637
PaeI GCATGC 1 cut(s) 637
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 188, 314
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 7 cut(s) 481, 493, 496, 499, 502, 522, 544
PleI GAGTC 3 cut(s) 346, 433, 630
PpsI GAGTC 3 cut(s) 346, 433, 630
PshBI ATTAAT 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 24, 254
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 220, 611
RsaNI GTAC 2 cut(s) 219, 610
SaqAI TTAA 3 cut(s) 210, 603, 751
SatI GCNGC 7 cut(s) 480, 492, 495, 498, 501, 521, 543
Sau3AI GATC 5 cut(s) 24, 48, 254, 415, 732
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 3 cut(s) 347, 434, 631
ScrFI CCNGG 1 cut(s) 87
SetI ASST 9 cut(s) 183, 208, 337, 348, 363, 424, 525, 566, 654
SfcI CTRYAG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 637
Sse9I AATT 1 cut(s) 172
SsiI CCGC 7 cut(s) 273, 323, 479, 491, 498, 501, 542
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 2 cut(s) 183, 348
TaqI TCGA 1 cut(s) 450
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 218
TauI GCSGC 5 cut(s) 482, 494, 500, 503, 545
TfiI GAWTC 2 cut(s) 188, 314
Tru1I TTAA 3 cut(s) 210, 603, 751
Tru9I TTAA 3 cut(s) 210, 603, 751
TscAI CASTG 3 cut(s) 122, 271, 387
TseI GCWGC 2 cut(s) 494, 520
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 2 cut(s) 110, 725
TspRI CASTG 3 cut(s) 122, 271, 387
VspI ATTAAT 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 32
XceI RCATGY 1 cut(s) 637
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.