Prupe.3G287700_v2.0.a1
MYB Family

Transcription factor MYB98-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004738
Physical Location & Seq
Forward (+)
25945413 .. 25946141
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G287700.1

Sequence Viewer

Length: 729 bp
ATGGTGATCACATGTACTTACTGCGTGCATGCAAATTTGCAGAAAGATATGTGGAGCGAAGAAGAAGACAAAATACTAATCGAAGCCCATAAGCAAATCGGGAACAAATGGGCGGAAATCGCGAAGAGGCTGCCGGGGAGGACTGAAAACACAATCAAGAATCATTGGAACGCAACAAAGAGAAAGCAAAACTCAAAGAAGAAAACCAACAAAGACCCCAACAACAACATTAATCCCCCCGAGAGCTCTCTCTTGCAGGACTACATCAGGAGCGTTGTCTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTGCTACTACTCCTAAGACTTCTTCAGCTTCAACCGAAACGACCGAAACAACCGAGCAGAGAAACGCACTCTCATCCGATCACTCCAGGGGCTTTTACTTCAACCAAAACAATGCCGAGAGCGCAAACTGGGCCCAGACAGCTTATCATCCTGATCATATCAGTAATGAGACGTCCAATAATATGTACAGTCAGATGGGTGGTTCTGTTTCTAATTTGTTCAATTTTGAAAGTTATGGGTTTGGTGGATCTTTCTTGGTTGACCAGGTAACCGAGGTTGAGGAATATCGGGGCAGCAGCATGGAGGCTGAGATGCCGTTGGCGTTGGAGATGCAGGGCCCTGATGATGACCATGTCAAAAAGGAGATGGATTTGCTCGAGATGATTTGCCAAGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009960 GO:0009987 GO:0010154 GO:0010228 GO:0010262 GO:0010439 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010675 GO:0019216 GO:0019217 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042304 GO:0042592 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045723 GO:0045834 GO:0045893 GO:0045923 GO:0045935 GO:0045995 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0055081 GO:0055088 GO:0055089 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904095 GO:2000014 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000242 GO:2000692 GO:2001141 GO:2001279 GO:2001280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

243

Amino Acids

27.04

Weight (kDa)

5.3

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 580
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 2 cut(s) 16, 512
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 4 cut(s) 357, 427, 547, 554
AjnI CCWGG 2 cut(s) 410, 588
AluBI AGCT 4 cut(s) 246, 353, 467, 724
AluI AGCT 4 cut(s) 246, 353, 467, 724
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 283, 488
AlwI GGATC 1 cut(s) 580
Ama87I CYCGRG 2 cut(s) 239, 701
AoxI GGCC 2 cut(s) 456, 661
ApaI GGGCCC 2 cut(s) 460, 665
ApeKI GCWGC 3 cut(s) 130, 618, 621
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 231
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 4 cut(s) 456, 457, 661, 662
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 239, 701
BaeGI GKGCMC 2 cut(s) 460, 665
BanII GRGCYC 3 cut(s) 248, 460, 665
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 3 cut(s) 117, 630, 633
BccI CCATC 2 cut(s) 514, 685
BceAI ACGGC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 412, 590
BclI TGATCA 2 cut(s) 6, 478
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 283, 488
BisI GCNGC 3 cut(s) 131, 619, 622
BlsI GCNGC 3 cut(s) 132, 620, 623
Bme1390I CCNGG 3 cut(s) 135, 412, 590
BmeT110I CYCGRG 2 cut(s) 239, 701
BmgT120I GGNCC 4 cut(s) 456, 457, 661, 662
BmiI GGNNCC 2 cut(s) 458, 663
BmrFI CCNGG 3 cut(s) 135, 412, 590
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 627, 645
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 4 cut(s) 134, 411, 597, 715
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 2 cut(s) 412, 590
BseDI CCNNGG 4 cut(s) 134, 411, 597, 715
BseGI GGATG 2 cut(s) 398, 472
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 458
BseSI GKGCMC 2 cut(s) 460, 665
BseXI GCAGC 3 cut(s) 117, 630, 633
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 458, 663
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 248
BsiHKCI CYCGRG 2 cut(s) 239, 701
BsiSI CCGG 1 cut(s) 134
BsmAI GTCTC 2 cut(s) 283, 488
BsmBI CGTCTC 1 cut(s) 488
BsnI GGCC 2 cut(s) 458, 663
BsoBI CYCGRG 2 cut(s) 239, 701
Bsp120I GGGCCC 2 cut(s) 456, 661
Bsp1286I GDGCHC 3 cut(s) 248, 460, 665
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 4 cut(s) 6, 403, 478, 572
Bsp68I TCGCGA 1 cut(s) 122
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 458, 663
BspCNI CTCAG 1 cut(s) 625
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 458, 663
BspPI GGATC 1 cut(s) 580
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 4 cut(s) 134, 411, 597, 715
BssMI GATC 4 cut(s) 6, 403, 478, 572
BssNI GRCGYC 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 715
Bst2UI CCWGG 2 cut(s) 412, 590
Bst4CI ACNGT 1 cut(s) 515
Bst6I CTCTTC 2 cut(s) 119, 286
BstACI GRCGYC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 26, 30
BstDEI CTNAG 2 cut(s) 339, 633
BstEII GGTNACC 1 cut(s) 592
BstF5I GGATG 2 cut(s) 398, 472
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 4 cut(s) 9, 406, 481, 575
BstMAI GTCTC 2 cut(s) 283, 488
BstMBI GATC 4 cut(s) 6, 403, 478, 572
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 119, 446, 455, 464
BstNI CCWGG 2 cut(s) 412, 590
BstNSI RCATGY 2 cut(s) 15, 32
BstPI GGTNACC 1 cut(s) 592
BstSCI CCNGG 3 cut(s) 133, 410, 588
BstSLI GKGCMC 2 cut(s) 460, 665
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 117, 630, 633
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 2 cut(s) 458, 663
BtsCI GGATG 2 cut(s) 398, 472
BtuMI TCGCGA 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 26, 30
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 4 cut(s) 456, 457, 661, 662
CsiI ACCWGGT 1 cut(s) 588
Csp6I GTAC 2 cut(s) 15, 511
CviAII CATG 4 cut(s) 12, 29, 625, 677
CviQI GTAC 2 cut(s) 15, 511
DdeI CTNAG 2 cut(s) 339, 633
DpnI GATC 4 cut(s) 8, 405, 480, 574
DpnII GATC 4 cut(s) 6, 403, 478, 572
Eam1104I CTCTTC 2 cut(s) 119, 286
EarI CTCTTC 2 cut(s) 119, 286
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 715
Eco24I GRGCYC 3 cut(s) 248, 460, 665
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 2 cut(s) 239, 701
Eco91I GGTNACC 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 661, 662
EcoO65I GGTNACC 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 410, 588
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 3 cut(s) 248, 460, 665
ErhI CCWWGG 1 cut(s) 715
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 4 cut(s) 15, 32, 628, 680
FaiI YATR 9 cut(s) 13, 30, 50, 90, 483, 509, 561, 626, 678
FalI AAGNNNNNCTT 1 cut(s) 708
FatI CATG 4 cut(s) 11, 28, 624, 676
FbaI TGATCA 2 cut(s) 6, 478
Fnu4HI GCNGC 3 cut(s) 131, 619, 622
FokI GGATG 2 cut(s) 385, 459
FriOI GRGCYC 3 cut(s) 248, 460, 665
Fsp4HI GCNGC 3 cut(s) 131, 619, 622
GlaI GCGC 1 cut(s) 448
GluI GCNGC 3 cut(s) 131, 619, 622
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 458, 663
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 4 cut(s) 15, 32, 628, 680
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 1 cut(s) 160
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 2 cut(s) 403, 519
Hpy188III TCNNGA 6 cut(s) 100, 121, 157, 268, 476, 703
Hpy8I GTNNAC 1 cut(s) 586
HpyCH4III ACNGT 1 cut(s) 515
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 28, 32, 40, 256, 658
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 446, 455, 464
HpyF3I CTNAG 2 cut(s) 339, 633
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 4 cut(s) 15, 32, 628, 680
HspAI GCGC 1 cut(s) 447
Ksp22I TGATCA 2 cut(s) 6, 478
Kzo9I GATC 4 cut(s) 6, 403, 478, 572
LmnI GCTCC 2 cut(s) 54, 270
Lsp1109I GCAGC 3 cut(s) 117, 630, 633
LweI GCATC 2 cut(s) 627, 645
MabI ACCWGGT 1 cut(s) 588
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 1 cut(s) 592
MalI GATC 4 cut(s) 8, 405, 480, 574
MboI GATC 4 cut(s) 6, 403, 478, 572
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 3 cut(s) 248, 460, 665
MluCI AATT 3 cut(s) 34, 538, 547
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 5 cut(s) 120, 132, 592, 598, 622
MseI TTAA 1 cut(s) 231
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 3 cut(s) 135, 412, 590
MvaI CCWGG 2 cut(s) 412, 590
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 4 cut(s) 119, 446, 455, 464
NciI CCSGG 1 cut(s) 135
NdeII GATC 4 cut(s) 6, 403, 478, 572
NlaIII CATG 4 cut(s) 15, 32, 628, 680
NlaIV GGNNCC 2 cut(s) 458, 663
NmeAIII GCCGAG 1 cut(s) 466
NruI TCGCGA 1 cut(s) 122
NspI RCATGY 2 cut(s) 15, 32
PaeI GCATGC 1 cut(s) 32
PaeR7I CTCGAG 1 cut(s) 701
PciI ACATGT 1 cut(s) 11
PfeI GAWTC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 677
PkrI GCNGC 3 cut(s) 132, 620, 623
PscI ACATGT 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 410, 588
PspEI GGTNACC 1 cut(s) 592
PspGI CCWGG 2 cut(s) 410, 588
PspN4I GGNNCC 2 cut(s) 458, 663
PspOMI GGGCCC 2 cut(s) 456, 661
PspPI GGNCC 4 cut(s) 456, 457, 661, 662
PsuI RGATCY 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 677
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 2 cut(s) 16, 512
RsaNI GTAC 2 cut(s) 15, 511
SacI GAGCTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 131, 619, 622
Sau3AI GATC 4 cut(s) 6, 403, 478, 572
Sau96I GGNCC 4 cut(s) 456, 457, 661, 662
ScrFI CCNGG 3 cut(s) 135, 412, 590
SduI GDGCHC 3 cut(s) 248, 460, 665
SetI ASST 7 cut(s) 248, 355, 469, 500, 594, 603, 726
SexAI ACCWGGT 1 cut(s) 588
SfaNI GCATC 2 cut(s) 627, 645
Sfr274I CTCGAG 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SphI GCATGC 1 cut(s) 32
Sse9I AATT 3 cut(s) 34, 538, 547
SsiI CCGC 1 cut(s) 113
SstI GAGCTC 1 cut(s) 248
StyD4I CCNGG 3 cut(s) 133, 410, 588
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 1 cut(s) 515
TaiI ACGT 1 cut(s) 500
TaqI TCGA 2 cut(s) 81, 702
TaqII GACCGA 1 cut(s) 383
TasI AATT 3 cut(s) 34, 538, 547
TatI WGTACW 2 cut(s) 14, 510
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 3 cut(s) 130, 618, 621
Tth111I GACNNNGTC 1 cut(s) 677
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 34
XceI RCATGY 2 cut(s) 15, 32
XhoI CTCGAG 1 cut(s) 701
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.