Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Reverse (-)

11937871 .. 11939653

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGACTCCGCAATGCTTCTTGAAAACCCTGAAGACAGCTAAACAAACTTATACATTCTCAATCTACAAGCTTCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGCTTCACCGGAAACACCACTCTCCGATCTCAATCTCTCCACTCTTCGCCGTATTTTATCAGACCCAGATATCAAATCCTGGAAATGCATCTCCCTTTTCAATTTCATCCTGGAGAACCCATCTCTTTTCTCATTCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTTCCGTGTCTTGTCGGAGAGGAGATTCTCATATGCGAAAGAACTCTTGAAGCCTGTGGCTATTGATGACATTCTCAGGTACCCTTTTAATGTAATCGTCTCTAGCGTTATTGATGAATGTGGTTGTGAGAAGAAAGTTGTTGGGAGGTTCTTTAATTCGATGATTATGGTTTATTCAGACAATGGAAAATTTAGTGAAGTTGTTGAGGTTTTTGAGTATATGAAGAACAATGAAGTTAAGATTGATGAAAAGACTTGTACTTTGCATTTGTTGAATCTCAAGAGATGTGATCAGATGGAACTAGCTAGAGATTTCTTTAGTCTAATGGTTGAGTCAGGGATTGATGTTGTTACTGTGTACTCTTTAACTGTTGTTGTTACGGTGTTGTGTTGCAATGGGGAGATTACAAGAGCAAGAGAATTGGTGGAGGAGATGGGGTTGGTTAAAGGGGTTAAGGCTAATATTGTTACGTTTAAGTCGATGATTGGTTGTTGTGTGAAAAGATGGGATTTTGAAGAGTTGGATTTGGTTCTTAAGTTAATGGAGAAGGAAAGTGTGATGCTTGATCTCGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGGTTGAAGAAGCAGAGAGGTTGGTTTTGATGATGCATGATAAGAAGTTAAGAGTGGAGAGTTATCTGTATAATTTGATTATGAATGGGTACTCTCGGTTTGGACTAGTGGAGAAAGTGATTGAACTATATAGCGAAATGAGTTCTCGAGGTGTTACTCCGAACAAAGATACGTATTGGGTGTTGATGAATGGACTTTGCAAAGCTGGGAAAGTTTGTGAAGCGATGAGTTTTTTGAATGAGTTGCGAGTGAATGAGTTTGAGATTGATGAAGAAATGTATAGTACATTGAGTGAAGAGTGTTACAGAGTAGGAATGATAGATAAATCTTTGGAAGTGGTGGCTGAGATGATTAGGGATGGATTCATTCCTGGTGCTACGATATGTGAAAGATTAGCTGATTCGTTGTTTGAAGTAAACAGGAAAGAGGCACAAATGCTGATTACCATTGTGGTTAAGTGTGGTATTAAACCAAAATCGTGTTCTCAATATGGTCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

462

Amino Acids

52.93

Weight (kDa)

5.44

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 178	2.5e-06	PPR repeat family
PPR_2	PF13041	317 - 363	4.4e-15	PPR repeat family
PPR	PF01535	318 - 347	1.1e-06	PPR repeat
PPR_1	PF12854	345 - 377	2.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	5 cut(s)	353, 532, 632, 977, 1171
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	9 cut(s)	22, 205, 322, 547, 788, 893, 1010, 1123, 1298
AhlI	ACTAGT	2 cut(s)	875, 991
AjnI	CCWGG	3 cut(s)	182, 213, 1255
AjuI	GAANNNNNNNTTGG	2 cut(s)	1351, 1383
AluBI	AGCT	5 cut(s)	38, 70, 578, 1091, 1283
AluI	AGCT	5 cut(s)	38, 70, 578, 1091, 1283
Alw26I	GTCTC	2 cut(s)	270, 376
Ama87I	CYCGRG	1 cut(s)	1032
ApoI	RAATTY	1 cut(s)	461
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
Asp718I	GGTACC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	1032
BanI	GGYRCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	38
BccI	CCATC	6 cut(s)	232, 562, 700, 771, 860, 1238
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	3 cut(s)	184, 215, 1257
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	2 cut(s)	270, 376
BcuI	ACTAGT	2 cut(s)	875, 991
BfaI	CTAG	5 cut(s)	375, 575, 579, 876, 992
BfrI	CTTAAG	1 cut(s)	806
Bme1390I	CCNGG	3 cut(s)	184, 215, 1257
BmeT110I	CYCGRG	1 cut(s)	1032
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	3 cut(s)	184, 215, 1257
BmsI	GCATC	3 cut(s)	201, 822, 909
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	1059
BsaBI	GATNNNNATC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bse3DI	GCAATG	2 cut(s)	17, 673
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	184, 215, 1257
BseGI	GGATG	2 cut(s)	210, 1249
BseJI	GATNNNNATC	1 cut(s)	135
BseMI	GCAATG	2 cut(s)	17, 673
BseMII	CTCAG	3 cut(s)	265, 361, 1221
BseRI	GAGGAG	3 cut(s)	65, 307, 716
BseYI	CCCAGC	1 cut(s)	1091
BshNI	GGYRCC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	270, 376
BsmBI	CGTCTC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	1032
Bsp143I	GATC	4 cut(s)	130, 247, 562, 838
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	3 cut(s)	264, 360, 1222
BspLI	GGNNCC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	17, 673
BssMI	GATC	4 cut(s)	130, 247, 562, 838
Bst2UI	CCWGG	3 cut(s)	184, 215, 1257
Bst4CI	ACNGT	3 cut(s)	628, 643, 655
Bst6I	CTCTTC	3 cut(s)	153, 783, 1176
BstAFI	CTTAAG	1 cut(s)	806
BstBAI	YACGTR	1 cut(s)	1059
BstDEI	CTNAG	3 cut(s)	251, 347, 1230
BstF5I	GGATG	2 cut(s)	210, 1249
BstKTI	GATC	4 cut(s)	133, 250, 565, 841
BstMAI	GTCTC	2 cut(s)	270, 376
BstMBI	GATC	4 cut(s)	130, 247, 562, 838
BstNI	CCWGG	3 cut(s)	184, 215, 1257
BstSCI	CCNGG	3 cut(s)	182, 213, 1255
BstSNI	TACGTA	1 cut(s)	1059
BstV2I	GAAGAC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	1124
BtsCI	GGATG	2 cut(s)	210, 1249
Csp6I	GTAC	5 cut(s)	352, 531, 631, 976, 1170
CviAII	CATG	1 cut(s)	923
CviJI	RGCY	9 cut(s)	38, 70, 325, 332, 578, 731, 1091, 1229, 1283
CviKI_1	RGCY	9 cut(s)	38, 70, 325, 332, 578, 731, 1091, 1229, 1283
CviQI	GTAC	5 cut(s)	352, 531, 631, 976, 1170
DdeI	CTNAG	3 cut(s)	251, 347, 1230
DpnI	GATC	4 cut(s)	132, 249, 564, 840
DpnII	GATC	4 cut(s)	130, 247, 562, 838
Eam1104I	CTCTTC	3 cut(s)	153, 783, 1176
EarI	CTCTTC	3 cut(s)	153, 783, 1176
Eco105I	TACGTA	1 cut(s)	1059
Eco32I	GATATC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	1032
EcoRII	CCWGG	3 cut(s)	182, 213, 1255
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	2 cut(s)	194, 924
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	1 cut(s)	926
FatI	CATG	1 cut(s)	922
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	562
FokI	GGATG	2 cut(s)	197, 1256
FspBI	CTAG	5 cut(s)	375, 575, 579, 876, 992
GsaI	CCCAGC	1 cut(s)	1095
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	926
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	6 cut(s)	4, 297, 547, 605, 1248, 1286
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	631, 873, 1303
Hpy188I	TCNGA	8 cut(s)	130, 166, 254, 289, 451, 567, 1047, 1383
Hpy188III	TCNNGA	5 cut(s)	19, 319, 553, 842, 1032
Hpy8I	GTNNAC	3 cut(s)	631, 873, 1303
HpyAV	CCTTC	1 cut(s)	814
HpyCH4III	ACNGT	3 cut(s)	628, 643, 655
HpyCH4IV	ACGT	2 cut(s)	743, 1058
HpyCH4V	TGCA	5 cut(s)	192, 538, 666, 922, 1086
HpyF3I	CTNAG	3 cut(s)	251, 347, 1230
HpySE526I	ACGT	2 cut(s)	743, 1058
Hsp92II	CATG	1 cut(s)	926
KpnI	GGTACC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	130, 247, 562, 838
LweI	GCATC	3 cut(s)	201, 822, 909
MaeI	CTAG	5 cut(s)	375, 575, 579, 876, 992
MaeII	ACGT	2 cut(s)	743, 1058
MaeIII	GTNAC	6 cut(s)	622, 649, 739, 848, 1039, 1187
MalI	GATC	4 cut(s)	132, 249, 564, 840
MboI	GATC	4 cut(s)	130, 247, 562, 838
MboII	GAAGA	9 cut(s)	43, 75, 140, 415, 508, 800, 905, 1169, 1193
MluCI	AATT	6 cut(s)	79, 205, 427, 461, 692, 958
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	3 cut(s)	265, 267, 774
MnlI	CCTC	9 cut(s)	86, 97, 285, 411, 472, 694, 897, 1028, 1306
Mph1103I	ATGCAT	2 cut(s)	194, 924
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	184, 215, 1257
MvaI	CCWGG	3 cut(s)	184, 215, 1257
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	130, 247, 562, 838
NlaIII	CATG	1 cut(s)	926
NlaIV	GGNNCC	1 cut(s)	353
NsiI	ATGCAT	2 cut(s)	194, 924
PaeR7I	CTCGAG	1 cut(s)	1032
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 749
PfeI	GAWTC	4 cut(s)	297, 547, 1248, 1286
PfoI	TCCNGGA	2 cut(s)	182, 213
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Ppu21I	YACGTR	1 cut(s)	1059
Psp6I	CCWGG	3 cut(s)	182, 213, 1255
PspFI	CCCAGC	1 cut(s)	1091
PspGI	CCWGG	3 cut(s)	182, 213, 1255
PspN4I	GGNNCC	1 cut(s)	353
RsaI	GTAC	5 cut(s)	353, 532, 632, 977, 1171
RsaNI	GTAC	5 cut(s)	352, 531, 631, 976, 1170
Sau3AI	GATC	4 cut(s)	130, 247, 562, 838
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	3 cut(s)	184, 215, 1257
SfaNI	GCATC	3 cut(s)	201, 822, 909
Sfr274I	CTCGAG	1 cut(s)	1032
SlaI	CTCGAG	1 cut(s)	1032
SmlI	CTYRAG	3 cut(s)	551, 806, 1032
SmoI	CTYRAG	3 cut(s)	551, 806, 1032
SnaBI	TACGTA	1 cut(s)	1059
SpeI	ACTAGT	2 cut(s)	875, 991
Sse9I	AATT	6 cut(s)	79, 205, 427, 461, 692, 958
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	5 cut(s)	375, 575, 579, 876, 992
StyD4I	CCNGG	3 cut(s)	182, 213, 1255
TaaI	ACNGT	3 cut(s)	628, 643, 655
TaiI	ACGT	2 cut(s)	746, 1061
TaqI	TCGA	4 cut(s)	431, 752, 843, 1033
TasI	AATT	6 cut(s)	79, 205, 427, 461, 692, 958
TatI	WGTACW	3 cut(s)	530, 630, 1169
TfiI	GAWTC	4 cut(s)	297, 547, 1248, 1286
TspDTI	ATGAA	9 cut(s)	199, 402, 509, 519, 534, 983, 1088, 1170, 1240
TspGWI	ACGGA	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	806
XapI	RAATTY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	1032
XspI	CTAG	5 cut(s)	375, 575, 579, 876, 992
Zsp2I	ATGCAT	2 cut(s)	194, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.