Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

37057 .. 38394

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgtcgctccacaacgtcctccgaaccctgaaaactgtgaaagtaagaacccaagtaccctttcaagaattctttgaactaatctctgcaatcccaagtccatcagctgctccaaaacccttgaatcccaccaccatttccctcctctccaagctcaaccccaactctctgcacctcatcctctcagaacccacactcagcgcctccaaatgccttgtcttcttcaacttcctcctcaaaaaccagtcctttatctcattcaaagttgacctccaagcccacttgactctcatttgcaggcttatcagggcaagaaggatcacacatgccgagcaagttttcaagtccatctcggttgatcaaaattccaggtacccatttcgtgccattgcttcttgtgttgaagtgtgttgtcttgaacctgtggttgaagccaagttgttcaatttgatgcttaaagtttactctgatatcaaaaatttcgatggaggtttggaggcttttgattacatcaacagtattgggattcggatagatgagaggacatataattttttttcggttgctatgaacagagctggtgaggtggaaaggggtatagatttcttgtatagattgttatattcgggcactggggtctctgtgtattgtttgacagctgtggtggaggggatgtgtaggaatggagagattacaaggagtagagagttggtgcaggaaatggctggtagaggaattaaacccaatatcatcacattcaatataatggtggaagcttgtgctaagagatggaacttttcggagttggatttgattttgcctttgatggaaaaggaaggagttgcatttgatgtcaagacatatgaattcttgatcgatggcttcacgagctccgggaaggtagaagaagccgaaagattggttggggagatgcatgacaagggattgaaagtaaaaactcatgtatacaatttgataataaatggctattgtagaaaaggttctctggaaagtgctctttctttgttttccaagatggcggagagaagtatattccagaatgctgatacatactggtttctaataaatggtatttgcaaggttggagagatggggctggcaatgcaatatgttaatgagatgcagaacaagggatttgaattagacaatcttgactgcaacatcttggctgatggttttcgcagcaaagggatggccaacgagctttttgagttacaggcgttgatggagaaaaaaagttctaaagctaatggctttaaacagaagaaaaatggatatgatttgacgaggaagcagccagctgtacataataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

445

Amino Acids

50.31

Weight (kDa)

8.62

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	1 cut(s)	1040
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	1215
AcsI	RAATTY	4 cut(s)	68, 364, 478, 866
AfaI	GTAC	3 cut(s)	57, 374, 1326
AjnI	CCWGG	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	4 cut(s)	45, 77, 906, 938
AluBI	AGCT	9 cut(s)	107, 154, 578, 659, 776, 891, 1225, 1268, 1322
AluI	AGCT	9 cut(s)	107, 154, 578, 659, 776, 891, 1225, 1268, 1322
Alw21I	GWGCWC	2 cut(s)	893, 1018
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	1215
ApeKI	GCWGC	3 cut(s)	107, 1203, 1315
ApoI	RAATTY	4 cut(s)	68, 364, 478, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
Asp700I	GAANNNNTTC	1 cut(s)	1000
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BalI	TGGCCA	1 cut(s)	1217
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	893
BauI	CACGAG	1 cut(s)	886
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	893, 1018
BbvI	GCAGC	3 cut(s)	94, 1215, 1327
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	643
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	3 cut(s)	108, 1204, 1316
BlsI	GCNGC	3 cut(s)	109, 1205, 1317
Bme1390I	CCNGG	2 cut(s)	370, 895
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	370, 895
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	441, 921, 1131
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	643
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bse1I	ACTGG	3 cut(s)	244, 637, 1079
Bse3DI	GCAATG	2 cut(s)	387, 1128
BseBI	CCWGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	876
BseGI	GGATG	3 cut(s)	177, 678, 1218
BseMI	GCAATG	2 cut(s)	387, 1128
BseMII	CTCAG	2 cut(s)	198, 211
BseNI	ACTGG	3 cut(s)	244, 637, 1079
BseRI	GAGGAG	2 cut(s)	134, 224
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	94, 1215, 1327
BsgI	GTGCAG	2 cut(s)	155, 734
BshFI	GGCC	1 cut(s)	1217
BshNI	GGYRCC	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	876
BsiHKAI	GWGCWC	2 cut(s)	893, 1018
BsiSI	CCGG	1 cut(s)	894
BsmAI	GTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	1 cut(s)	1217
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	632, 893, 1018
Bsp1407I	TGTACA	1 cut(s)	1324
Bsp143I	GATC	3 cut(s)	318, 358, 873
BspACI	CCGC	1 cut(s)	1040
BspANI	GGCC	1 cut(s)	1217
BspCNI	CTCAG	2 cut(s)	197, 210
BspDI	ATCGAT	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	387, 1128
BsrGI	TGTACA	1 cut(s)	1324
BsrI	ACTGG	3 cut(s)	244, 637, 1079
BssMI	GATC	3 cut(s)	318, 358, 873
BssNAI	GTATAC	1 cut(s)	967
BssSI	CACGAG	1 cut(s)	886
Bst1107I	GTATAC	1 cut(s)	967
Bst2BI	CACGAG	1 cut(s)	886
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	37, 518
BstAUI	TGTACA	1 cut(s)	1324
BstC8I	GCNNGC	3 cut(s)	299, 1119, 1320
BstDEI	CTNAG	3 cut(s)	184, 197, 783
BstF5I	GGATG	3 cut(s)	177, 678, 1218
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	321, 361, 876
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	3 cut(s)	318, 358, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	888, 1123
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	368, 893
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	3 cut(s)	94, 1215, 1327
BstV2I	GAAGAC	1 cut(s)	211
BstZ17I	GTATAC	1 cut(s)	967
Bsu15I	ATCGAT	1 cut(s)	876
BsuRI	GGCC	1 cut(s)	1217
BsuTUI	ATCGAT	1 cut(s)	876
BtsCI	GGATG	3 cut(s)	177, 678, 1218
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	3 cut(s)	299, 1119, 1320
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	876
Csp6I	GTAC	3 cut(s)	56, 373, 1325
CviAII	CATG	3 cut(s)	326, 935, 962
CviQI	GTAC	3 cut(s)	56, 373, 1325
DdeI	CTNAG	3 cut(s)	184, 197, 783
DpnI	GATC	3 cut(s)	320, 360, 875
DpnII	GATC	3 cut(s)	318, 358, 873
DraI	TTTAAA	1 cut(s)	1279
EaeI	YGGCCR	1 cut(s)	1215
EciI	GGCGGA	1 cut(s)	1055
Ecl136II	GAGCTC	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	891
EcoRI	GAATTC	2 cut(s)	68, 866
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	936
EcoT38I	GRGCYC	1 cut(s)	893
FaeI	CATG	3 cut(s)	329, 938, 965
FatI	CATG	3 cut(s)	325, 934, 961
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	3 cut(s)	108, 1204, 1316
FokI	GGATG	3 cut(s)	164, 685, 1225
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	3 cut(s)	108, 1204, 1316
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	108, 1204, 1316
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	1217
HapII	CCGG	1 cut(s)	894
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	329, 938, 965
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	3 cut(s)	124, 286, 526
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	3 cut(s)	268, 463, 967
Hpy188I	TCNGA	5 cut(s)	23, 187, 469, 531, 802
Hpy188III	TCNNGA	8 cut(s)	65, 416, 856, 871, 886, 1007, 1057, 1172
Hpy8I	GTNNAC	3 cut(s)	268, 463, 967
HpyAV	CCTTC	3 cut(s)	309, 830, 892
HpyCH4III	ACNGT	2 cut(s)	37, 518
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	888, 1123
HpyF3I	CTNAG	3 cut(s)	184, 197, 783
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	329, 938, 965
HspAI	GCGC	1 cut(s)	201
KpnI	GGTACC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	318, 358, 873
LmnI	GCTCC	3 cut(s)	12, 115, 896
Lsp1109I	GCAGC	3 cut(s)	94, 1215, 1327
LweI	GCATC	3 cut(s)	441, 921, 1131
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	1233
MalI	GATC	3 cut(s)	320, 360, 875
MboI	GATC	3 cut(s)	318, 358, 873
MboII	GAAGA	4 cut(s)	211, 214, 917, 1297
MhlI	GDGCHC	3 cut(s)	632, 893, 1018
MlsI	TGGCCA	1 cut(s)	1217
MluNI	TGGCCA	1 cut(s)	1217
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	786, 1084
Mox20I	TGGCCA	1 cut(s)	1217
Mph1103I	ATGCAT	1 cut(s)	936
MroXI	GAANNNNTTC	1 cut(s)	1000
MscI	TGGCCA	1 cut(s)	1217
MseI	TTAA	5 cut(s)	456, 738, 1134, 1278, 1336
Msp20I	TGGCCA	1 cut(s)	1217
MspA1I	CMGCKG	3 cut(s)	107, 659, 1322
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	2 cut(s)	370, 895
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	2 cut(s)	888, 1123
NciI	CCSGG	1 cut(s)	895
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	3 cut(s)	318, 358, 873
NlaIII	CATG	3 cut(s)	329, 938, 965
NlaIV	GGNNCC	1 cut(s)	374
NmeAIII	GCCGAG	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	936
NspI	RCATGY	1 cut(s)	329
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	1000
PfeI	GAWTC	2 cut(s)	124, 526
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	109, 1205, 1317
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	374
PsrI	GAACNNNNNNTAC	2 cut(s)	985, 1017
PvuII	CAGCTG	3 cut(s)	107, 659, 1322
RsaI	GTAC	3 cut(s)	57, 374, 1326
RsaNI	GTAC	3 cut(s)	56, 373, 1325
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	5 cut(s)	456, 738, 1134, 1278, 1336
SatI	GCNGC	3 cut(s)	108, 1204, 1316
Sau3AI	GATC	3 cut(s)	318, 358, 873
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	370, 895
SduI	GDGCHC	3 cut(s)	632, 893, 1018
SfaNI	GCATC	3 cut(s)	441, 921, 1131
SsiI	CCGC	1 cut(s)	1040
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	2 cut(s)	368, 893
TaaI	ACNGT	2 cut(s)	37, 518
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	483, 876
TatI	WGTACW	1 cut(s)	1324
TfiI	GAWTC	2 cut(s)	124, 526
Tru1I	TTAA	5 cut(s)	456, 738, 1134, 1278, 1336
Tru9I	TTAA	5 cut(s)	456, 738, 1134, 1278, 1336
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	3 cut(s)	107, 1203, 1315
TspDTI	ATGAA	2 cut(s)	584, 879
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	4 cut(s)	68, 364, 478, 866
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	1 cut(s)	1000
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.