Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

62139336 .. 62143917

Gene Structure 4582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTGAGAGAAGTATATTCCAGAATGCTGATACATACTGGTTTCTAATAAATGGTATTTGCAAGGTTGGAGAGATGGGGCTGGCAATGCAATATGTTAATGAGATGCAGAACAAGGGATTTGAATTAGACAATCATGACTGCAACATCTTGGCTGATGGTTTTCGCAGCAAAGGGATGACCAACGAGCTTTTTGAGTTACATGCGTTGATGGAGAAAAAAAGTTCTAAAGCTAATGGCTTTAAACAGAAGAAAAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

6.72

Isoelectric Point (pI)

14.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	10 - 55	6.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	2 cut(s)	190, 233
AluI	AGCT	2 cut(s)	190, 233
ApeKI	GCWGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	70, 152, 205
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	136
CviAII	CATG	2 cut(s)	137, 203
CviJI	RGCY	6 cut(s)	5, 82, 155, 190, 233, 240
CviKI_1	RGCY	6 cut(s)	5, 82, 155, 190, 233, 240
DdeI	CTNAG	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	244
FaeI	CATG	2 cut(s)	140, 206
FaiI	YATR	5 cut(s)	17, 37, 96, 138, 204
FatI	CATG	2 cut(s)	136, 202
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	140, 206
Hpy188III	TCNNGA	2 cut(s)	22, 137
HpyCH4V	TGCA	4 cut(s)	63, 91, 109, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	140, 206
LpnPI	CCDG	3 cut(s)	25, 35, 68
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	49
MseI	TTAA	2 cut(s)	99, 243
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	140, 206
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	99, 243
SatI	GCNGC	1 cut(s)	169
SetI	ASST	3 cut(s)	69, 192, 235
SfaNI	GCATC	1 cut(s)	96
SgeI	CNNG	9 cut(s)	34, 52, 76, 95, 127, 149, 163, 199, 215
Sse9I	AATT	1 cut(s)	125
TasI	AATT	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	99, 243
Tru9I	TTAA	2 cut(s)	99, 243
TseI	GCWGC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.