Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

62138279 .. 62139334

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGTTCCACAACGTCCTCCGAACCCTGAAAACTGTGAAAGTAAGAACCCAAGTACCCTTTCAAGAATTCTGTGAACTAATCTCTGCAATCCCAAGTCCCTCAGCTGCTCCAAAACCCTTGAATCCCACCACCATTTCCCTCCTGTCCAAGCTCAACCCCAACTCTCTGCACCTCATCCTCTCAGAACCCACACTCAGCGCCTCCAAATGCCTTGTCTTCTTCAACTTCCTCCTCAAAAACCAGTCCTTTATCTCATTCAAACTTGACCTCCAAGCCCACTTGACTCTCATTTGCAGGCTTATCAGGGCAAGAAAGATCACACTTGCGGAGCAAGTTTTCAAGTCCATCTCGGTTGATCAAAATTCCAGGTACCCATTTCGTGCCATTGCTTCTTGTGTTGAACTGTGTTGTCTTGAACCTGTGGTTGAAGCCAAGTTGTTCAATTTGATGCTTAAAATTTACTCTGATATCAAAAATTTCGATGGAGGTTTGGAGGCTTTTGATCACATCAAGAGTATTGGGATTCGGATAGATGAGAGGACATATAATTTTTTTTCGGTTGCTATGAACAGAGCTGGTGAGGTGGAAAAGGGTATAGATTTCTTGTATAGATTGTTATATTCGGGCACTGGGGTCTCTGTGTATTGTTTGACAGCTGTGGTGGAGGGGATGTGTAGGAATGGAGAGATTAGAAGGAGTAGAGAGTTGGTGCAGGAAATGGCTAGTAGAGGAATTAAACCCAATATCATCACATTCAATATAATGGTGGAAGCTTGTGCTAAGAGATGGAACTTTTCGGAGTTGGATTTGATTTTGCCTCTGATGGAAAAGGAAGGAGTTGCATTTGATGTCAAGACATATGAATTCTTGATCGATGGCTTCACGAGCTCCGGGAAGGTAGAAGAAGCGAAAGATTGGTTGGGGAGATGCATGACAAGGGATGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

317

Amino Acids

35.88

Weight (kDa)

8.74

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	213 - 263	1.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	214 - 262	8.6e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AciI	CCGC	1 cut(s)	329
AcsI	RAATTY	5 cut(s)	68, 364, 459, 478, 866
AfaI	GTAC	2 cut(s)	57, 374
AjnI	CCWGG	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	4 cut(s)	45, 77, 905, 937
AluBI	AGCT	6 cut(s)	107, 154, 578, 659, 776, 891
AluI	AGCT	6 cut(s)	107, 154, 578, 659, 776, 891
Alw21I	GWGCWC	1 cut(s)	893
Alw26I	GTCTC	1 cut(s)	643
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	5 cut(s)	68, 364, 459, 478, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	893
BauI	CACGAG	1 cut(s)	886
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	893
BbvCI	CCTCAGC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	6 cut(s)	356, 479, 783, 820, 872, 938
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	2 cut(s)	358, 505
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	370, 895
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	370, 895
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	441, 920
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	643
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 659, 689
Bse1I	ACTGG	2 cut(s)	244, 637
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	876
BseGI	GGATG	3 cut(s)	177, 678, 949
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	117, 198, 211
BseNI	ACTGG	2 cut(s)	244, 637
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	2 cut(s)	155, 734
BshNI	GGYRCC	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	893
BsiSI	CCGG	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	2 cut(s)	632, 893
Bsp143I	GATC	4 cut(s)	318, 358, 505, 873
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	3 cut(s)	116, 197, 210
BspDI	ATCGAT	1 cut(s)	876
BspLI	GGNNCC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	244, 637
BssMI	GATC	4 cut(s)	318, 358, 505, 873
BssSI	CACGAG	1 cut(s)	886
Bst2BI	CACGAG	1 cut(s)	886
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	37, 408
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	4 cut(s)	103, 184, 197, 783
BstF5I	GGATG	3 cut(s)	177, 678, 949
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	321, 361, 508, 876
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	318, 358, 505, 873
BstMWI	GCNNNNNNNGC	1 cut(s)	888
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	368, 893
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	876
BsuTUI	ATCGAT	1 cut(s)	876
BtsCI	GGATG	3 cut(s)	177, 678, 949
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	56, 373
CviAII	CATG	1 cut(s)	934
CviQI	GTAC	2 cut(s)	56, 373
DdeI	CTNAG	4 cut(s)	103, 184, 197, 783
DpnI	GATC	4 cut(s)	320, 360, 507, 875
DpnII	GATC	4 cut(s)	318, 358, 505, 873
Ecl136II	GAGCTC	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	893
Eco31I	GGTCTC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	891
EcoRI	GAATTC	2 cut(s)	68, 866
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	935
EcoT38I	GRGCYC	1 cut(s)	893
FaeI	CATG	1 cut(s)	937
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	933
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	2 cut(s)	358, 505
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	164, 685
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	204
HapII	CCGG	1 cut(s)	894
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	937
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	3 cut(s)	124, 286, 526
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	6 cut(s)	23, 187, 469, 531, 802, 825
Hpy188III	TCNNGA	6 cut(s)	65, 416, 514, 856, 871, 886
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	690, 830, 892
HpyCH4III	ACNGT	2 cut(s)	37, 408
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	6 cut(s)	89, 172, 297, 715, 845, 933
HpyF10VI	GCNNNNNNNGC	1 cut(s)	888
HpyF3I	CTNAG	4 cut(s)	103, 184, 197, 783
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	937
HspAI	GCGC	1 cut(s)	201
KpnI	GGTACC	1 cut(s)	376
Ksp22I	TGATCA	2 cut(s)	358, 505
Kzo9I	GATC	4 cut(s)	318, 358, 505, 873
LmnI	GCTCC	3 cut(s)	115, 331, 896
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	441, 920
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	1 cut(s)	15
MalI	GATC	4 cut(s)	320, 360, 507, 875
MboI	GATC	4 cut(s)	318, 358, 505, 873
MboII	GAAGA	3 cut(s)	211, 214, 917
MhlI	GDGCHC	2 cut(s)	632, 893
MluCI	AATT	8 cut(s)	68, 364, 445, 459, 478, 550, 735, 866
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	786
Mph1103I	ATGCAT	1 cut(s)	935
MseI	TTAA	2 cut(s)	456, 738
MspA1I	CMGCKG	2 cut(s)	107, 659
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	2 cut(s)	370, 895
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	888
NciI	CCSGG	1 cut(s)	895
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	4 cut(s)	318, 358, 505, 873
NlaIII	CATG	1 cut(s)	937
NlaIV	GGNNCC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	935
PfeI	GAWTC	2 cut(s)	124, 526
PfoI	TCCNGGA	1 cut(s)	893
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	374
PvuII	CAGCTG	2 cut(s)	107, 659
RsaI	GTAC	2 cut(s)	57, 374
RsaNI	GTAC	2 cut(s)	56, 373
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	2 cut(s)	456, 738
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	318, 358, 505, 873
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	370, 895
SduI	GDGCHC	2 cut(s)	632, 893
SfaNI	GCATC	2 cut(s)	441, 920
Sse9I	AATT	8 cut(s)	68, 364, 445, 459, 478, 550, 735, 866
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	2 cut(s)	368, 893
TaaI	ACNGT	2 cut(s)	37, 408
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	483, 876
TasI	AATT	8 cut(s)	68, 364, 445, 459, 478, 550, 735, 866
TfiI	GAWTC	2 cut(s)	124, 526
Tru1I	TTAA	2 cut(s)	456, 738
Tru9I	TTAA	2 cut(s)	456, 738
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	584, 879
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	5 cut(s)	68, 364, 459, 478, 866
XspI	CTAG	1 cut(s)	726
Zsp2I	ATGCAT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.