Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Reverse (-)

7618741 .. 7620093

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTCATTCCAGAACGTCCTCAGAACCCTCAATACTGTCAAAAGAACACCCGTCAGACCCTATCAAGAATTCATAGAATTAATTTCTAAAACCCCAGAAACTGCAACTTCAAAACCCCTCAATACCACAATCATATCCCTCCTCTCCAAGCTCAAACCCAACTTTCTCAACCTCATTCTCTCAGACCCCAAATTCAAATGCTCCAGATGCTTGCTTTTCTTCAACTTCCTCCTAAAAAACCAGTCCTTTATCTCATTCAAGATTGACCTCCATGCCCACTTAACCCTCATTTGCAGGCTTCTCAAGGCAAGAAAGTTCACTGAAGCTGAGGAAATTTTCAAATGTATCTCAGTTGATGAAAATTCCAGGTACCCTTTTTCTGTTATTGCTTCTGCTGCTGAAATTTGCTGTCTTGAACCTAGAGTCAAAGCGAAATTGTTCAATTTGATGATTAAAGTTTATTCGGATAGTGAAAATTTCAAGCAAGTTTTTGAGACTCTTGATTTTATGAAGAGTAATGGGATTCAGATTGATGAGAGGACTTGTACTGTGCATTTGCTTGCTCTCAACAGGAGAGATGAGGTGCAAAAGGGTTTAGATTTCTTTTATCGATTGCTCGAATCGGGCACTAAGGTCTCAGTATATTCTTTGACAGTTATGGTAGATGGGCTGTGTAGGAGTGGGGAGATTAAAAGGAGTAGAGAGTTAGTGGAGGAAATGGTGAGTATAGGAACTAAACCCAATATCATTACATTCAACACAATTGTGGATGCTTGTGCTAAGAGATGGAACTTTCCAGAGTTGGATCTGATATTGCTTGTGATGGAAAAGGAAGGAATGGCATTCGATATCAAGACGTATCAGTTCTTGATTGATGGGTTCGCGAGTTCTGGAAAGGTTGAAGAAGCTGAAAGGTTGGTTGGGGAGATGCATGATAAAGGATTGAAAGTGAACACGCATTCATACAATTTGATAATAAATGGCTATTGTAGATTGGGGTCTATGGAAAGTGCTCATTCTTTATTTCGTAAGATGGCTGAGAGAAGTACATTCCAGAATGCTGATACGTACTGGGCTCTAATAAATGGTTTTTGCAAGGTTGGGGCGCTGGGGCTGGCAATGGAATATTTAAATGAGATGCAGAAGAAGGGGATTGAATTGGACAATGTTATCTTGAATATATTGATTGATGGTCTTTGCAACAAAGGGATGGCTGATGAAGCTTTTCAGTTGCAGGCATTGATGGTGAAAAAAGCTTTTAATGCTGATTTGTCTGGGTGTAAAGAGACAGTAAATGGATTATCTAAATTGAATCAGGCTGAGGAAGCAAATGAGGATGCCGGACCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

451

Amino Acids

50.98

Weight (kDa)

7.46

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	884
AclWI	GGATC	1 cut(s)	813
AcsI	RAATTY	6 cut(s)	68, 191, 333, 361, 402, 475
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	4 cut(s)	371, 547, 1048, 1070
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	5 cut(s)	151, 326, 908, 1223, 1256
AluI	AGCT	5 cut(s)	151, 326, 908, 1223, 1256
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	3 cut(s)	488, 640, 1280
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	6 cut(s)	68, 191, 333, 361, 402, 475
AseI	ATTAAT	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	437, 1224
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	1108
AspS9I	GGNCC	1 cut(s)	1343
AsuHPI	GGTGA	2 cut(s)	733, 1258
AvaII	GGWCC	1 cut(s)	1343
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	1078
Bbv12I	GWGCWC	1 cut(s)	1015
BbvCI	CCTCAGC	2 cut(s)	327, 1320
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	8 cut(s)	659, 780, 817, 869, 1027, 1184, 1204, 1237
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	3 cut(s)	488, 640, 1280
BfaI	CTAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	1109
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	1343
BmgT120I	GGNCC	1 cut(s)	1343
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	1081
BmsI	GCATC	5 cut(s)	197, 760, 918, 1128, 1327
BmuI	ACTGGG	1 cut(s)	1081
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	2 cut(s)	327, 1320
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	610
BsaAI	YACGTR	1 cut(s)	1068
BsaI	GGTCTC	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	241, 1076
Bse3DI	GCAATG	1 cut(s)	1125
BseBI	CCWGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	610
BseGI	GGATG	3 cut(s)	775, 1215, 1342
BseMI	GCAATG	1 cut(s)	1125
BseMII	CTCAG	7 cut(s)	34, 195, 318, 363, 651, 1029, 1311
BseNI	ACTGG	2 cut(s)	241, 1076
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	1108
Bsh1236I	CGCG	1 cut(s)	884
BshNI	GGYRCC	1 cut(s)	369
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiSI	CCGG	1 cut(s)	1341
BsmAI	GTCTC	3 cut(s)	488, 640, 1280
BsmI	GAATGC	3 cut(s)	842, 958, 1063
Bso31I	GGTCTC	1 cut(s)	640
Bsp1286I	GDGCHC	3 cut(s)	629, 1015, 1078
Bsp143I	GATC	1 cut(s)	805
Bsp68I	TCGCGA	1 cut(s)	884
BspCNI	CTCAG	7 cut(s)	33, 194, 319, 362, 650, 1030, 1312
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	1125
BsrI	ACTGG	2 cut(s)	241, 1076
BssMI	GATC	1 cut(s)	805
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	4 cut(s)	37, 550, 655, 1291
Bst6I	CTCTTC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	1068
BstC8I	GCNNGC	5 cut(s)	212, 296, 561, 1116, 1236
BstDEI	CTNAG	9 cut(s)	20, 181, 327, 349, 630, 637, 780, 1038, 1320
BstF5I	GGATG	3 cut(s)	775, 1215, 1342
BstFNI	CGCG	1 cut(s)	884
BstH2I	RGCGCY	1 cut(s)	1109
BstHHI	GCGC	1 cut(s)	1108
BstKTI	GATC	1 cut(s)	808
BstMAI	GTCTC	3 cut(s)	488, 640, 1280
BstMBI	GATC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 395, 1220, 1262, 1325
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	629
BstSNI	TACGTA	1 cut(s)	1068
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	610
BtsCI	GGATG	3 cut(s)	775, 1215, 1342
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	1 cut(s)	884
Cac8I	GCNNGC	5 cut(s)	212, 296, 561, 1116, 1236
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	1108
Cfr13I	GGNCC	1 cut(s)	1343
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	4 cut(s)	370, 546, 1047, 1069
CviAII	CATG	2 cut(s)	272, 932
CviQI	GTAC	4 cut(s)	370, 546, 1047, 1069
DdeI	CTNAG	9 cut(s)	20, 181, 327, 349, 630, 637, 780, 1038, 1320
DpnI	GATC	1 cut(s)	807
DpnII	GATC	1 cut(s)	805
DraI	TTTAAA	1 cut(s)	1131
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Eco105I	TACGTA	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	1078
Eco31I	GGTCTC	1 cut(s)	640
Eco32I	GATATC	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	1343
Eco57I	CTGAAG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	850
EcoT22I	ATGCAT	1 cut(s)	933
EcoT38I	GRGCYC	1 cut(s)	1078
FaeI	CATG	2 cut(s)	275, 935
FatI	CATG	2 cut(s)	271, 931
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	3 cut(s)	782, 1222, 1349
FriOI	GRGCYC	1 cut(s)	1078
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	1107
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	1109
HapII	CCGG	1 cut(s)	1341
HhaI	GCGC	1 cut(s)	1108
Hin1II	CATG	2 cut(s)	275, 935
Hin6I	GCGC	1 cut(s)	1106
HinP1I	GCGC	1 cut(s)	1106
HindIII	AAGCTT	2 cut(s)	1221, 1254
HinfI	GANTC	5 cut(s)	423, 496, 523, 620, 1312
HpaII	CCGG	1 cut(s)	1341
HphI	GGTGA	2 cut(s)	733, 1258
Hpy166II	GTNNAC	2 cut(s)	318, 952
Hpy188I	TCNGA	6 cut(s)	23, 56, 184, 466, 528, 810
Hpy8I	GTNNAC	2 cut(s)	318, 952
HpyAV	CCTTC	2 cut(s)	827, 1141
HpyCH4III	ACNGT	4 cut(s)	37, 550, 655, 1291
HpyCH4IV	ACGT	3 cut(s)	15, 857, 1067
HpyCH4V	TGCA	9 cut(s)	104, 294, 553, 586, 931, 1095, 1141, 1200, 1234
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 395, 1220, 1262, 1325
HpyF3I	CTNAG	9 cut(s)	20, 181, 327, 349, 630, 637, 780, 1038, 1320
HpySE526I	ACGT	3 cut(s)	15, 857, 1067
Hsp92II	CATG	2 cut(s)	275, 935
HspAI	GCGC	1 cut(s)	1106
KpnI	GGTACC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	805
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	5 cut(s)	197, 760, 918, 1128, 1327
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	15, 857, 1067
MalI	GATC	1 cut(s)	807
MboI	GATC	1 cut(s)	805
MboII	GAAGA	4 cut(s)	211, 523, 914, 1156
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	3 cut(s)	629, 1015, 1078
MlyI	GAGTC	2 cut(s)	432, 490
MmeI	TCCRAC	1 cut(s)	783
Mph1103I	ATGCAT	1 cut(s)	933
MroXI	GAANNNNTTC	2 cut(s)	437, 1224
MseI	TTAA	6 cut(s)	80, 281, 453, 690, 1130, 1260
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	1 cut(s)	1341
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	3 cut(s)	842, 958, 1063
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	5 cut(s)	207, 395, 1220, 1262, 1325
NdeII	GATC	1 cut(s)	805
NlaIII	CATG	2 cut(s)	275, 935
NlaIV	GGNNCC	1 cut(s)	371
NruI	TCGCGA	1 cut(s)	884
NsiI	ATGCAT	1 cut(s)	933
OliI	CACNNNNGTG	1 cut(s)	764
PctI	GAATGC	3 cut(s)	842, 958, 1063
PdmI	GAANNNNTTC	2 cut(s)	437, 1224
PfeI	GAWTC	3 cut(s)	523, 620, 1312
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	2 cut(s)	431, 490
PpsI	GAGTC	2 cut(s)	431, 490
Ppu21I	YACGTR	1 cut(s)	1068
PshBI	ATTAAT	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	1343
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	805
RruI	TCGCGA	1 cut(s)	884
RsaI	GTAC	4 cut(s)	371, 547, 1048, 1070
RsaNI	GTAC	4 cut(s)	370, 546, 1047, 1069
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	6 cut(s)	80, 281, 453, 690, 1130, 1260
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	805
Sau96I	GGNCC	1 cut(s)	1343
SchI	GAGTC	2 cut(s)	432, 490
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	3 cut(s)	629, 1015, 1078
SfaNI	GCATC	5 cut(s)	197, 760, 918, 1128, 1327
SinI	GGWCC	1 cut(s)	1343
SmiI	ATTTAAAT	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SnaBI	TACGTA	1 cut(s)	1068
SspI	AATATT	1 cut(s)	1127
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	365
SwaI	ATTTAAAT	1 cut(s)	1131
TaaI	ACNGT	4 cut(s)	37, 550, 655, 1291
TaiI	ACGT	3 cut(s)	18, 860, 1070
TaqI	TCGA	3 cut(s)	610, 618, 846
TatI	WGTACW	2 cut(s)	545, 1046
TfiI	GAWTC	3 cut(s)	523, 620, 1312
Tru1I	TTAA	6 cut(s)	80, 281, 453, 690, 1130, 1260
Tru9I	TTAA	6 cut(s)	80, 281, 453, 690, 1130, 1260
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	5 cut(s)	61, 372, 524, 951, 1233
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	1343
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	6 cut(s)	68, 191, 333, 361, 402, 475
XmnI	GAANNNNTTC	2 cut(s)	437, 1224
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.