RLG00000019928

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006036
Physical Location & Seq
Forward (+)
58682015 .. 58682514
500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019928

Sequence Viewer

Length: 429 bp
ATGTCCTCTAGCCGGGATGGGCACAAGGAGGATTTTGTCGGAATTGGTTGGAGGATGCGACCAGCAAGAGGACGTCTCAAAGCTCTTAAAGACTGTGACAGACTTAAGGAAGAAGATCAAAATTGGTGTCGCCAATCTTTGGCGTGGGATGGGGTGAGAGCGCTGAAGAGAAGGGCGACTTTGGTTCGACTTTGGATGGGTGCTGATGGCGGCGAAGGGCCCCTCGGAGTTGAGGTTTTCCAGACTACCAGGGCTCGACCCACAACAATGATTGATGTCATGTTACAATCTGCCCCGATGACAGTGATGAGCGGCACACACGGAGTGATGGCGGTGAACATGGCTGCCATCACTGATGAGGCAGGAAGAAGAGGGCTTGGCTCAAGTTGGGTGGCCCAAGTCCTTTTGGAGGCCCAAATCAATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.64

Weight (kDa)

9.58

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 3 cut(s) 210, 312, 332
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 73
AdeI CACNNNGTG 1 cut(s) 325
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 4 cut(s) 12, 68, 139, 409
AflII CTTAAG 1 cut(s) 104
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 80
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 3 cut(s) 218, 393, 411
ApaI GGGCCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 4 cut(s) 218, 219, 394, 412
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 166, 346
BaeGI GKGCMC 2 cut(s) 24, 222
BanII GRGCYC 2 cut(s) 222, 256
BbvI GCAGC 1 cut(s) 331
BccI CCATC 6 cut(s) 11, 143, 190, 200, 322, 356
BciT130I CCWGG 1 cut(s) 250
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 164
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 3 cut(s) 211, 313, 345
BlsI GCNGC 3 cut(s) 212, 314, 346
Bme1390I CCNGG 2 cut(s) 14, 250
BmgT120I GGNCC 4 cut(s) 218, 219, 394, 412
BmiI GGNNCC 2 cut(s) 220, 221
BmrFI CCNGG 2 cut(s) 14, 250
BmsI GCATC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 223, 249
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 68, 139, 409
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 223, 249
BseGI GGATG 4 cut(s) 22, 60, 154, 201
BseLI CCNNNNNNNGG 4 cut(s) 12, 68, 139, 409
BseSI GKGCMC 2 cut(s) 24, 222
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 3 cut(s) 220, 395, 413
BsiSI CCGG 1 cut(s) 13
BslI CCNNNNNNNGG 4 cut(s) 12, 68, 139, 409
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 3 cut(s) 220, 395, 413
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 24, 222, 256
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 210, 312, 332
BspANI GGCC 3 cut(s) 220, 395, 413
BspLI GGNNCC 2 cut(s) 220, 221
BspTI CTTAAG 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 223, 249
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 95, 304
Bst6I CTCTTC 2 cut(s) 161, 364
BstACI GRCGYC 1 cut(s) 73
BstAFI CTTAAG 1 cut(s) 104
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 4 cut(s) 22, 60, 154, 201
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 12, 248
BstSLI GKGCMC 2 cut(s) 24, 222
BstV1I GCAGC 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 422
BsuRI GGCC 3 cut(s) 220, 395, 413
BtsCI GGATG 4 cut(s) 22, 60, 154, 201
BtsIMutI CAGTG 2 cut(s) 309, 351
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 4 cut(s) 218, 219, 394, 412
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 2 cut(s) 280, 340
CviJI RGCY 9 cut(s) 12, 83, 220, 254, 344, 376, 381, 395, 413
CviKI_1 RGCY 9 cut(s) 12, 83, 220, 254, 344, 376, 381, 395, 413
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 161, 364
EarI CTCTTC 2 cut(s) 161, 364
Eco24I GRGCYC 2 cut(s) 222, 256
Eco47III AGCGCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 218, 219
EcoRII CCWGG 1 cut(s) 248
EcoT38I GRGCYC 2 cut(s) 222, 256
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 2 cut(s) 283, 343
FaiI YATR 2 cut(s) 281, 341
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FatI CATG 2 cut(s) 279, 339
Fnu4HI GCNGC 3 cut(s) 211, 313, 345
FokI GGATG 4 cut(s) 29, 67, 161, 208
FriOI GRGCYC 2 cut(s) 222, 256
Fsp4HI GCNGC 3 cut(s) 211, 313, 345
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 211, 313, 345
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 220, 395, 413
HapII CCGG 1 cut(s) 13
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 2 cut(s) 283, 343
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HpaII CCGG 1 cut(s) 13
HphI GGTGA 2 cut(s) 166, 346
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 41, 227
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 165, 209
HpyCH4III ACNGT 2 cut(s) 95, 304
HpyCH4IV ACGT 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 2 cut(s) 283, 343
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 26, 75, 235, 254, 262, 348
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 95, 282
MalI GATC 1 cut(s) 117
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 115
MboII GAAGA 5 cut(s) 122, 125, 178, 378, 381
MhlI GDGCHC 3 cut(s) 24, 222, 256
MluCI AATT 2 cut(s) 42, 121
MmeI TCCRAC 2 cut(s) 19, 29
MnlI CCTC 9 cut(s) 16, 22, 45, 62, 226, 233, 352, 365, 403
MseI TTAA 2 cut(s) 87, 105
MslI CAYNNNNRTG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 14, 250
MvaI CCWGG 1 cut(s) 250
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 283, 343
NlaIV GGNNCC 2 cut(s) 220, 221
NmuCI GTSAC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 3 cut(s) 212, 314, 346
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 220, 221
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 4 cut(s) 218, 219, 394, 412
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 87, 105
SatI GCNGC 3 cut(s) 211, 313, 345
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 4 cut(s) 218, 219, 394, 412
ScrFI CCNGG 2 cut(s) 14, 250
SduI GDGCHC 3 cut(s) 24, 222, 256
SetI ASST 3 cut(s) 76, 85, 237
SfaNI GCATC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 104, 382
SmoI CTYRAG 2 cut(s) 104, 382
Sse9I AATT 2 cut(s) 42, 121
SsiI CCGC 3 cut(s) 210, 312, 332
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 12, 248
TaaI ACNGT 2 cut(s) 95, 304
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 187, 256
TasI AATT 2 cut(s) 42, 121
TauI GCSGC 2 cut(s) 213, 315
Tru1I TTAA 2 cut(s) 87, 105
Tru9I TTAA 2 cut(s) 87, 105
TscAI CASTG 2 cut(s) 309, 358
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 309, 358
Van91I CCANNNNNTGG 1 cut(s) 139
Vha464I CTTAAG 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 407
XspI CTAG 1 cut(s) 9
ZraI GACGTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.