Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Reverse (-)

11680130 .. 11681473

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1124300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTCGCTCCAAAACGTCCTCAGAACCCTCAAAACTGTGAAAATAACGCCCGCCAGACTCTATCAAGAATTCACAGAACTCATCTCCACACCCCCAAAACCTCTCGAAGCCACCACCATCACCCTCCTCTCCAACCTCAACCGCAACTCCCTCCGCTTCATTCTCTCCGACCCCAAATTCAGAACCTCCAAATGTTTGCTTTTCTTCAACTTCCTCCTCAAAAACCAATCTTTAATCTCCTTCAAGATCGACCTCCATGCCCACTTGACCATCCTCTGCAGGCTTCTCCAGACAAGAAAGTTCGACGATGCCGAGGAAATCCTCAGATATGTCTCCGTTGATGAAAATAACAGGTACCCTTTTCATGTAATTGCTTCTGCTGTTGAAATTTGCTGCCTTGAACCTAGAGTTAGAGCCAAATTGTTCAATTCCATGCTTAAAGTGTATTCGGATTGCGAAAATTGGGACCGGGTTTTGGAGACTTTTGATCACATGAGGAATAATGGGATCCGGATTGATGAGAGAACTTGTACTGTGCATTTGGTTACTCTTATTAGATGTGATGAGGTGCAAAAGGGTTTGGGTTTCTTGTATCGGCTGCGCGAATCGGGCACTGAGGTTTCGGTTTATTCTTTAACGGTTGTGGTGGATGGGTTATGTAGGAGTGGGGAGATTAGAAGGAGTAGAGAGTTGGTGGAGGAGATGGTGAGGAGAGGGACTAAACCCAATATCATTACATTCAATACAATGGTGGATGCTTGTGCTAAGAGATGGAACTTTGTAGAGTTGGATAGGGTTTTGCTTTTGATGGAGAAGGAAGGAGTGGCGCTCGATATCAAGACGTATCAGTTCTTGATTGATGGGTTCACAAGCGCAGGGAAGGTAGAAGAAGCTGAGAGGCTGGTTGGGGAGATGCATGATAAAGGATTGAAAGTGAACACTCATTTGTACAATTTGATAATAAGTGGCTATTCTAGGTTGAGGTCTGTGGATAGTGCGATTTCTTCATTTTGTACAATGGATGAGAGAAGTGTAGTCCCGAACGCTGATACGTACTGGGCTCTAATAAGGGGCCTTTGCAGGGCTGGAGAGACGGGACTGGCAATGAAGTATGTACTTGAGATGCAGAGCAAGGGGTTTGAATTGGACAGTGTTATATTGAATAGCTTGATTGATGGACTTCACAACAAAGAGATGATTTATGAAGCTCTTGAGTTGCAACTGTTGATGGAGCAAATAGTTTTGAATGCTGATTCATCTGCGTGGAAAAAAAAGGTAAATGGATCACTTAAATCGAATCAACCTGATCAGGCTGAGGAACCAAAAGAGGCTGTTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

448

Amino Acids

51.21

Weight (kDa)

6.74

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	208 - 256	4.7e-11	PPR repeat family
TPR_24	PF23276	235 - 337	5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	243 - 289	8.4e-08	PPR repeat family
PPR_3	PF13812	269 - 324	6.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	274 - 305	2.2e-06	PPR repeat
PPR_2	PF13041	278 - 315	8.9e-06	PPR repeat family
PPR_2	PF13041	313 - 361	1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	510
AciI	CCGC	3 cut(s)	51, 142, 154
AclWI	GGATC	3 cut(s)	502, 515, 1291
AcsI	RAATTY	3 cut(s)	68, 176, 387
AfaI	GTAC	6 cut(s)	356, 532, 950, 1015, 1055, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	475, 1081
AluBI	AGCT	3 cut(s)	893, 1167, 1208
AluI	AGCT	3 cut(s)	893, 1167, 1208
Alw26I	GTCTC	3 cut(s)	337, 473, 1085
AlwI	GGATC	3 cut(s)	502, 515, 1291
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	1 cut(s)	1072
ApeKI	GCWGC	2 cut(s)	393, 598
ApoI	RAATTY	3 cut(s)	68, 176, 387
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	3 cut(s)	603, 829, 875
AspS9I	GGNCC	2 cut(s)	466, 1072
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	112, 718
AvaII	GGWCC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	1063
BbvCI	CCTCAGC	1 cut(s)	1314
BbvI	GCAGC	2 cut(s)	380, 585
BccI	CCATC	9 cut(s)	125, 278, 644, 697, 765, 802, 854, 1169, 1222
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BclI	TGATCA	2 cut(s)	487, 1306
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	337, 473, 1085
BfaI	CTAG	2 cut(s)	405, 975
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	830
BisI	GCNGC	2 cut(s)	394, 599
BlsI	GCNGC	2 cut(s)	395, 600
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	466, 1072
BmiI	GGNNCC	5 cut(s)	356, 467, 509, 1073, 1320
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	1066
BmsI	GCATC	4 cut(s)	298, 745, 903, 1113
BmuI	ACTGGG	1 cut(s)	1066
BplI	GAGNNNNNCTC	2 cut(s)	813, 845
BpmI	CTGGAG	2 cut(s)	272, 1107
Bpu10I	CCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	2 cut(s)	1139, 1232
BpuMI	CCSGG	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	1053
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 1081
Bse1I	ACTGG	2 cut(s)	1061, 1104
Bse3DI	GCAATG	1 cut(s)	1110
BseAI	TCCGGA	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	4 cut(s)	270, 655, 760, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	475, 1081
BseMI	GCAATG	1 cut(s)	1110
BseMII	CTCAG	5 cut(s)	34, 337, 606, 885, 1305
BseNI	ACTGG	2 cut(s)	1061, 1104
BseRI	GAGGAG	4 cut(s)	116, 206, 713, 724
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	380, 585
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	1074
BshNI	GGYRCC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	469, 511
BslFI	GGGAC	4 cut(s)	479, 730, 1022, 1110
BslI	CCNNNNNNNGG	2 cut(s)	475, 1081
BsmAI	GTCTC	3 cut(s)	337, 473, 1085
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	4 cut(s)	479, 730, 1022, 1110
BsmI	GAATGC	1 cut(s)	1252
BsnI	GGCC	1 cut(s)	1074
Bsp1286I	GDGCHC	2 cut(s)	614, 1063
Bsp13I	TCCGGA	1 cut(s)	510
Bsp1407I	TGTACA	2 cut(s)	948, 1013
Bsp143I	GATC	5 cut(s)	246, 487, 507, 1283, 1306
BspACI	CCGC	3 cut(s)	51, 142, 154
BspANI	GGCC	1 cut(s)	1074
BspCNI	CTCAG	5 cut(s)	33, 336, 607, 886, 1306
BspEI	TCCGGA	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	5 cut(s)	356, 467, 509, 1073, 1320
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	3 cut(s)	502, 515, 1291
BspT107I	GGYRCC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	1110
BsrGI	TGTACA	2 cut(s)	948, 1013
BsrI	ACTGG	2 cut(s)	1061, 1104
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	246, 487, 507, 1283, 1306
Bst4CI	ACNGT	5 cut(s)	37, 535, 640, 1151, 1224
BstAUI	TGTACA	2 cut(s)	948, 1013
BstBAI	YACGTR	1 cut(s)	1053
BstC8I	GCNNGC	2 cut(s)	51, 281
BstDEI	CTNAG	6 cut(s)	20, 323, 615, 765, 894, 1314
BstF5I	GGATG	4 cut(s)	270, 655, 760, 1027
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	3 cut(s)	603, 829, 875
BstKTI	GATC	5 cut(s)	249, 490, 510, 1286, 1309
BstMAI	GTCTC	3 cut(s)	337, 473, 1085
BstMBI	GATC	5 cut(s)	246, 487, 507, 1283, 1306
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	614
BstSNI	TACGTA	1 cut(s)	1053
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	380, 585
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	1074
BtsCI	GGATG	4 cut(s)	270, 655, 760, 1027
BtsIMutI	CAGTG	2 cut(s)	612, 1156
Cac8I	GCNNGC	2 cut(s)	51, 281
CfoI	GCGC	3 cut(s)	603, 829, 875
Cfr13I	GGNCC	2 cut(s)	466, 1072
Csp6I	GTAC	6 cut(s)	355, 531, 949, 1014, 1054, 1115
CviAII	CATG	5 cut(s)	257, 365, 433, 493, 917
CviQI	GTAC	6 cut(s)	355, 531, 949, 1014, 1054, 1115
DdeI	CTNAG	6 cut(s)	20, 323, 615, 765, 894, 1314
DpnI	GATC	5 cut(s)	248, 489, 509, 1285, 1308
DpnII	GATC	5 cut(s)	246, 487, 507, 1283, 1306
Eco105I	TACGTA	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	1063
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	1072
EcoRI	GAATTC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	918
EcoT38I	GRGCYC	1 cut(s)	1063
Esp3I	CGTCTC	1 cut(s)	1085
FaeI	CATG	5 cut(s)	260, 368, 436, 496, 920
FaqI	GGGAC	4 cut(s)	479, 730, 1022, 1110
FatI	CATG	5 cut(s)	256, 364, 432, 492, 916
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	2 cut(s)	487, 1306
Fnu4HI	GCNGC	2 cut(s)	394, 599
FokI	GGATG	4 cut(s)	257, 662, 767, 1034
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	2 cut(s)	394, 599
FspBI	CTAG	2 cut(s)	405, 975
GlaI	GCGC	3 cut(s)	602, 828, 874
GluI	GCNGC	2 cut(s)	394, 599
GsuI	CTGGAG	2 cut(s)	272, 1107
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	1 cut(s)	1074
HapII	CCGG	2 cut(s)	469, 511
HhaI	GCGC	3 cut(s)	603, 829, 875
Hin1II	CATG	5 cut(s)	260, 368, 436, 496, 920
Hin6I	GCGC	3 cut(s)	601, 827, 873
HinP1I	GCGC	3 cut(s)	601, 827, 873
HinfI	GANTC	4 cut(s)	57, 605, 1253, 1297
HpaII	CCGG	2 cut(s)	469, 511
HphI	GGTGA	2 cut(s)	112, 718
Hpy166II	GTNNAC	2 cut(s)	867, 937
Hpy188I	TCNGA	5 cut(s)	23, 169, 182, 326, 451
Hpy188III	TCNNGA	9 cut(s)	65, 104, 244, 289, 511, 838, 853, 1039, 1211
Hpy8I	GTNNAC	2 cut(s)	867, 937
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	5 cut(s)	250, 672, 808, 812, 874
HpyCH4III	ACNGT	5 cut(s)	37, 535, 640, 1151, 1224
HpyCH4IV	ACGT	3 cut(s)	15, 842, 1052
HpyCH4V	TGCA	7 cut(s)	279, 538, 571, 916, 1080, 1126, 1219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	6 cut(s)	20, 323, 615, 765, 894, 1314
HpySE526I	ACGT	3 cut(s)	15, 842, 1052
Hsp92II	CATG	5 cut(s)	260, 368, 436, 496, 920
HspAI	GCGC	3 cut(s)	601, 827, 873
Kpn2I	TCCGGA	1 cut(s)	510
KpnI	GGTACC	1 cut(s)	358
Ksp22I	TGATCA	2 cut(s)	487, 1306
Kzo9I	GATC	5 cut(s)	246, 487, 507, 1283, 1306
LmnI	GCTCC	2 cut(s)	12, 1231
Lsp1109I	GCAGC	2 cut(s)	380, 585
LweI	GCATC	4 cut(s)	298, 745, 903, 1113
MaeI	CTAG	2 cut(s)	405, 975
MaeII	ACGT	3 cut(s)	15, 842, 1052
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	5 cut(s)	248, 489, 509, 1285, 1308
MboI	GATC	5 cut(s)	246, 487, 507, 1283, 1306
MboII	GAAGA	3 cut(s)	196, 899, 996
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	614, 1063
MluCI	AATT	9 cut(s)	68, 176, 369, 387, 419, 427, 460, 952, 1142
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	3 cut(s)	156, 192, 768
Mph1103I	ATGCAT	1 cut(s)	918
MroI	TCCGGA	1 cut(s)	510
MseI	TTAA	4 cut(s)	233, 438, 635, 1290
MslI	CAYNNNNRTG	1 cut(s)	1261
MspI	CCGG	2 cut(s)	469, 511
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	1252
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	246, 487, 507, 1283, 1306
NlaIII	CATG	5 cut(s)	260, 368, 436, 496, 920
NlaIV	GGNNCC	5 cut(s)	356, 467, 509, 1073, 1320
NmeAIII	GCCGAG	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	1252
PfeI	GAWTC	3 cut(s)	605, 1253, 1297
PkrI	GCNGC	2 cut(s)	395, 600
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	1053
PspN4I	GGNNCC	5 cut(s)	356, 467, 509, 1073, 1320
PspPI	GGNCC	2 cut(s)	466, 1072
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	6 cut(s)	356, 532, 950, 1015, 1055, 1116
RsaNI	GTAC	6 cut(s)	355, 531, 949, 1014, 1054, 1115
RseI	CAYNNNNRTG	1 cut(s)	1261
SaqAI	TTAA	4 cut(s)	233, 438, 635, 1290
SatI	GCNGC	2 cut(s)	394, 599
Sau3AI	GATC	5 cut(s)	246, 487, 507, 1283, 1306
Sau96I	GGNCC	2 cut(s)	466, 1072
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	614, 1063
SfaNI	GCATC	4 cut(s)	298, 745, 903, 1113
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	1261
SmlI	CTYRAG	2 cut(s)	1118, 1211
SmoI	CTYRAG	2 cut(s)	1118, 1211
SnaBI	TACGTA	1 cut(s)	1053
Sse9I	AATT	9 cut(s)	68, 176, 369, 387, 419, 427, 460, 952, 1142
SsiI	CCGC	3 cut(s)	51, 142, 154
SspMI	CTAG	2 cut(s)	405, 975
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	5 cut(s)	37, 535, 640, 1151, 1224
TaiI	ACGT	3 cut(s)	18, 845, 1055
TaqI	TCGA	5 cut(s)	105, 249, 303, 831, 1295
TasI	AATT	9 cut(s)	68, 176, 369, 387, 419, 427, 460, 952, 1142
TatI	WGTACW	4 cut(s)	530, 948, 1013, 1114
TfiI	GAWTC	3 cut(s)	605, 1253, 1297
Tru1I	TTAA	4 cut(s)	233, 438, 635, 1290
Tru9I	TTAA	4 cut(s)	233, 438, 635, 1290
TscAI	CASTG	2 cut(s)	619, 1156
TseI	GCWGC	2 cut(s)	393, 598
TspDTI	ATGAA	7 cut(s)	148, 353, 357, 996, 1121, 1218, 1245
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	619, 1156
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	3 cut(s)	68, 176, 387
XspI	CTAG	2 cut(s)	405, 975
Zsp2I	ATGCAT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.