Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28050 |
| malus_domestica | MD03G1124300.v1.1 MD04G1147300.v1.1 |
| prunus_persica | Prupe.6G107000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071 |
| rosa_laevigata | RLG00000019928 RLG00000035191 RLG00000035192 |
| rosa_multiflora | Rmu_sc0000367.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00022520 Rroxscaffold_1G00022530 |
| rosa_rugosa | Rorug05G0310700 |
| rosa_samantha | Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100 |
| rosa_wichuraiana | Rw5G035710 Rw5G035720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 372 |
| AccB1I | GGYRCC | 1 cut(s) | 372 |
| AciI | CCGC | 1 cut(s) | 329 |
| AcsI | RAATTY | 3 cut(s) | 68, 364, 477 |
| AfaI | GTAC | 2 cut(s) | 57, 374 |
| AgsI | TTSAA | 9 cut(s) | 65, 124, 226, 262, 343, 404, 419, 431, 445 |
| AjnI | CCWGG | 1 cut(s) | 368 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 45, 77 |
| AluBI | AGCT | 2 cut(s) | 107, 154 |
| AluI | AGCT | 2 cut(s) | 107, 154 |
| ApeKI | GCWGC | 1 cut(s) | 107 |
| ApoI | RAATTY | 3 cut(s) | 68, 364, 477 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 201, 233 |
| Asp718I | GGTACC | 1 cut(s) | 372 |
| AspLEI | GCGC | 1 cut(s) | 203 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 39, 72 |
| BanI | GGYRCC | 1 cut(s) | 372 |
| BbsI | GAAGAC | 1 cut(s) | 211 |
| BbvCI | CCTCAGC | 1 cut(s) | 103 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 356, 478 |
| BciT130I | CCWGG | 1 cut(s) | 370 |
| BclI | TGATCA | 2 cut(s) | 358, 504 |
| BfoI | RGCGCY | 1 cut(s) | 204 |
| BisI | GCNGC | 1 cut(s) | 108 |
| BlsI | GCNGC | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 1 cut(s) | 370 |
| BmiI | GGNNCC | 1 cut(s) | 374 |
| BmrFI | CCNGG | 1 cut(s) | 370 |
| BmsI | GCATC | 1 cut(s) | 441 |
| BpiI | GAAGAC | 1 cut(s) | 211 |
| Bpu10I | CCTNAGC | 1 cut(s) | 103 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 255, 285 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| Bse3DI | GCAATG | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 370 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseMI | GCAATG | 1 cut(s) | 387 |
| BseMII | CTCAG | 3 cut(s) | 117, 198, 211 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseRI | GAGGAG | 2 cut(s) | 134, 224 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BsgI | GTGCAG | 1 cut(s) | 155 |
| BshNI | GGYRCC | 1 cut(s) | 372 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| Bsp143I | GATC | 3 cut(s) | 318, 358, 504 |
| BspACI | CCGC | 1 cut(s) | 329 |
| BspCNI | CTCAG | 3 cut(s) | 116, 197, 210 |
| BspLI | GGNNCC | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 1 cut(s) | 372 |
| BsrDI | GCAATG | 1 cut(s) | 387 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssMI | GATC | 3 cut(s) | 318, 358, 504 |
| Bst2UI | CCWGG | 1 cut(s) | 370 |
| Bst4CI | ACNGT | 1 cut(s) | 408 |
| BstC8I | GCNNGC | 1 cut(s) | 299 |
| BstDEI | CTNAG | 3 cut(s) | 103, 184, 197 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstH2I | RGCGCY | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 203 |
| BstKTI | GATC | 3 cut(s) | 321, 361, 507 |
| BstMBI | GATC | 3 cut(s) | 318, 358, 504 |
| BstNI | CCWGG | 1 cut(s) | 370 |
| BstSCI | CCNGG | 1 cut(s) | 368 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| Cac8I | GCNNGC | 1 cut(s) | 299 |
| CfoI | GCGC | 1 cut(s) | 203 |
| Csp6I | GTAC | 2 cut(s) | 56, 373 |
| CviJI | RGCY | 6 cut(s) | 107, 154, 278, 301, 434, 499 |
| CviKI_1 | RGCY | 6 cut(s) | 107, 154, 278, 301, 434, 499 |
| CviQI | GTAC | 2 cut(s) | 56, 373 |
| DdeI | CTNAG | 3 cut(s) | 103, 184, 197 |
| DpnI | GATC | 3 cut(s) | 320, 360, 506 |
| DpnII | GATC | 3 cut(s) | 318, 358, 504 |
| Eco32I | GATATC | 1 cut(s) | 472 |
| EcoRI | GAATTC | 1 cut(s) | 68 |
| EcoRII | CCWGG | 1 cut(s) | 368 |
| EcoRV | GATATC | 1 cut(s) | 472 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FbaI | TGATCA | 2 cut(s) | 358, 504 |
| Fnu4HI | GCNGC | 1 cut(s) | 108 |
| FokI | GGATG | 1 cut(s) | 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 108 |
| GlaI | GCGC | 1 cut(s) | 202 |
| GluI | GCNGC | 1 cut(s) | 108 |
| HaeII | RGCGCY | 1 cut(s) | 204 |
| HhaI | GCGC | 1 cut(s) | 203 |
| Hin6I | GCGC | 1 cut(s) | 201 |
| HinP1I | GCGC | 1 cut(s) | 201 |
| HinfI | GANTC | 3 cut(s) | 124, 286, 525 |
| Hpy166II | GTNNAC | 2 cut(s) | 77, 463 |
| Hpy188I | TCNGA | 4 cut(s) | 23, 187, 469, 530 |
| Hpy188III | TCNNGA | 3 cut(s) | 65, 416, 513 |
| Hpy8I | GTNNAC | 2 cut(s) | 77, 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 408 |
| HpyCH4IV | ACGT | 1 cut(s) | 15 |
| HpyCH4V | TGCA | 4 cut(s) | 10, 89, 172, 297 |
| HpyF3I | CTNAG | 3 cut(s) | 103, 184, 197 |
| HpySE526I | ACGT | 1 cut(s) | 15 |
| HspAI | GCGC | 1 cut(s) | 201 |
| KpnI | GGTACC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 2 cut(s) | 358, 504 |
| Kzo9I | GATC | 3 cut(s) | 318, 358, 504 |
| LmnI | GCTCC | 2 cut(s) | 115, 331 |
| LpnPI | CCDG | 7 cut(s) | 41, 257, 283, 292, 355, 382, 435 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 441 |
| MaeII | ACGT | 1 cut(s) | 15 |
| MalI | GATC | 3 cut(s) | 320, 360, 506 |
| MboI | GATC | 3 cut(s) | 318, 358, 504 |
| MboII | GAAGA | 2 cut(s) | 211, 214 |
| MluCI | AATT | 4 cut(s) | 68, 364, 445, 477 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MseI | TTAA | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 1 cut(s) | 370 |
| MvaI | CCWGG | 1 cut(s) | 370 |
| NdeII | GATC | 3 cut(s) | 318, 358, 504 |
| NlaIV | GGNNCC | 1 cut(s) | 374 |
| PfeI | GAWTC | 2 cut(s) | 124, 525 |
| PkrI | GCNGC | 1 cut(s) | 109 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| Psp6I | CCWGG | 1 cut(s) | 368 |
| PspGI | CCWGG | 1 cut(s) | 368 |
| PspN4I | GGNNCC | 1 cut(s) | 374 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| RsaI | GTAC | 2 cut(s) | 57, 374 |
| RsaNI | GTAC | 2 cut(s) | 56, 373 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 1 cut(s) | 108 |
| Sau3AI | GATC | 3 cut(s) | 318, 358, 504 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 1 cut(s) | 370 |
| SetI | ASST | 8 cut(s) | 18, 109, 156, 177, 273, 374, 424, 492 |
| SfaNI | GCATC | 1 cut(s) | 441 |
| Sse9I | AATT | 4 cut(s) | 68, 364, 445, 477 |
| SsiI | CCGC | 1 cut(s) | 329 |
| StyD4I | CCNGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 1 cut(s) | 408 |
| TaiI | ACGT | 1 cut(s) | 18 |
| TaqI | TCGA | 1 cut(s) | 482 |
| TasI | AATT | 4 cut(s) | 68, 364, 445, 477 |
| TfiI | GAWTC | 2 cut(s) | 124, 525 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TseI | GCWGC | 1 cut(s) | 107 |
| XapI | RAATTY | 3 cut(s) | 68, 364, 477 |