Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Reverse (-)

36486391 .. 36491660

Gene Structure 5270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0310700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTATAGCAATTTCAAAGAGCAGGCTATAGAGTACGTGAAGCAAGCCGTCCATGAAGACAACAGTGGAAACTACGCAAAGGCCTTTCCTTTGTACATGAACGCTCTCGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCACCGAGTATTTGCGCCGGGCCGAGGAGATTCGGGCCGTTTTGGACGACGGCGGGCCCGGCCCGGCCTCCAACGGCGACGCGGCGGTCGCGACCAGGCCCAAGACCAAGCCCAAGGACGGGGAAGGCGGCGACGGGGAGGATCCGGAGCAGGCCAAGCTCCGGGCTGGGCTTAATTCGGCGATTATAAGGGAAAAGCCCAATGTCAAGTGGAATGATGTGGCGGGTCTTGAGAGCGCTAAGCAGGCTTTGCAAGAGGCCGTGATATTGCCGGTCAAGTTCCCTCAGTTCTTTACTGGCAAGAGACGACCATGGAGGGCTTTTCTATTGTATGGTCCTCCTGGAACTGGAAAGTCTTACTTGGCCAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTCAGTATTTCCTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAGAGTGAGAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGATAGTGCCCCATCCATCATCTTCGTTGATGAAATAGATTCCTTATGTGGGACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAGACAGAACTTCTTGTGCAGATGCAGGGTGTGGGAACCAATGACCAAAAAGTTCTTGTTCTTGCAGCGACAAATACTCCCTATGCATTAGACCAGGCCATTCGAAGACGTTTTGACAAGCGTATTTACATTCCCCTTCCAGATGCAAAGGCTCGACAGCATATATTCAAAGTCCACTTGGGAGATACTCCTCACAACTTGACAGAAAGTGATTTTGAAAGCTTAGGTTTCAAAACTGAGGGATTTTCGGGTTCAGATATTTCTGTTTGTGTCAAGGATGTTCTTTTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTTTTCAAGAATTCTGATAATATGTTCATACCTTGTGGACCAAAGCAACCGGGTGCTGTCCAAATCACCATGCAGGAGTTGGCAGCTCAAGGACTAGCTTCACAGATCCTTCCACCTCCCATCACAAAAACAGATTTTGATAAGGTACTTGCTAGACAGAGGCCTACTGTGAGCAAAGGGGACCTTGAAGTCCATGAAAGGTTCACGAAAGAATTTGGAGAGGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090615 GO:0090617 GO:0097159 GO:0140053 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

433

Amino Acids

48.14

Weight (kDa)

6.65

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIT	PF04212	7 - 70	2.8e-21	MIT (microtubule interacting and transport) domain
AAA	PF00004	167 - 296	2.3e-43	ATPase family associated with various cellular activities (AAA)
Vps4_C	PF09336	367 - 430	6.6e-22	Vps4 C terminal oligomerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AasI	GACNNNNNNGTC	2 cut(s)	260, 1259
AccII	CGCG	3 cut(s)	257, 266, 712
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	5 cut(s)	228, 257, 260, 303, 398
AclWI	GGATC	3 cut(s)	311, 324, 1171
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	173, 1081, 1283
AcuI	CTGAAG	2 cut(s)	573, 576
AfaI	GTAC	6 cut(s)	35, 95, 113, 134, 1047, 1218
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	6 cut(s)	199, 293, 294, 336, 521, 705
AflIII	ACRYGT	1 cut(s)	710
AjnI	CCWGG	4 cut(s)	269, 514, 594, 843
AluBI	AGCT	7 cut(s)	334, 560, 628, 737, 972, 1157, 1169
AluI	AGCT	7 cut(s)	334, 560, 628, 737, 972, 1157, 1169
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	3 cut(s)	311, 324, 1171
Ama87I	CYCGRG	2 cut(s)	107, 654
Aor13HI	TCCGGA	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	412
ApaI	GGGCCC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	815, 1154
ApoI	RAATTY	3 cut(s)	173, 1081, 1283
AspLEI	GCGC	2 cut(s)	192, 413
AspS9I	GGNCC	9 cut(s)	195, 210, 230, 231, 236, 273, 509, 1109, 1252
AsuC2I	CCSGG	5 cut(s)	194, 234, 239, 338, 1122
AsuHPI	GGTGA	3 cut(s)	169, 626, 1129
AsuII	TTCGAA	1 cut(s)	853
AvaI	CYCGRG	2 cut(s)	107, 654
AvaII	GGWCC	3 cut(s)	509, 1109, 1252
BaeGI	GKGCMC	2 cut(s)	234, 667
BalI	TGGCCA	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	571, 603
BbsI	GAAGAC	2 cut(s)	63, 862
BbvI	GCAGC	2 cut(s)	827, 1166
BccI	CCATC	4 cut(s)	604, 676, 680, 1199
BceAI	ACGGC	5 cut(s)	32, 197, 241, 265, 419
BciT130I	CCWGG	4 cut(s)	271, 516, 596, 845
BcnI	CCSGG	5 cut(s)	194, 234, 239, 338, 1122
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	4 cut(s)	629, 741, 1166, 1224
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	4 cut(s)	258, 304, 816, 1155
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	4 cut(s)	259, 305, 817, 1156
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	9 cut(s)	194, 234, 239, 271, 338, 516, 596, 845, 1122
Bme18I	GGWCC	3 cut(s)	509, 1109, 1252
BmeT110I	CYCGRG	2 cut(s)	107, 654
BmgT120I	GGNCC	9 cut(s)	195, 210, 230, 231, 236, 273, 509, 1109, 1252
BmiI	GGNNCC	4 cut(s)	232, 318, 787, 1253
BmrFI	CCNGG	9 cut(s)	194, 234, 239, 271, 338, 516, 596, 845, 1122
BmsI	GCATC	3 cut(s)	762, 883, 1051
BpiI	GAAGAC	2 cut(s)	63, 862
Bpu10I	CCTNAGC	1 cut(s)	973
Bpu1102I	GCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	3 cut(s)	113, 425, 1143
BpuMI	CCSGG	5 cut(s)	194, 234, 239, 338, 1122
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	4 cut(s)	198, 288, 485, 540
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	811, 841
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 293, 294, 336, 521, 705
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	2 cut(s)	475, 526
Bse3DI	GCAATG	1 cut(s)	730
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	4 cut(s)	271, 516, 596, 845
BseDI	CCNNGG	4 cut(s)	198, 288, 485, 540
BseGI	GGATG	3 cut(s)	615, 668, 1033
BseLI	CCNNNNNNNGG	6 cut(s)	199, 293, 294, 336, 521, 705
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	473, 978
BseNI	ACTGG	2 cut(s)	475, 526
BseRI	GAGGAG	2 cut(s)	215, 930
BseSI	GKGCMC	2 cut(s)	234, 667
BseXI	GCAGC	2 cut(s)	827, 1166
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	788
Bsh1236I	CGCG	3 cut(s)	257, 266, 712
Bsh1285I	CGRYCG	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	264
BsiHKCI	CYCGRG	2 cut(s)	107, 654
BsiSI	CCGG	7 cut(s)	193, 234, 239, 320, 337, 446, 1121
BslFI	GGGAC	2 cut(s)	721, 1265
BslI	CCNNNNNNNGG	6 cut(s)	199, 293, 294, 336, 521, 705
BsmAI	GTCTC	1 cut(s)	472
BsmBI	CGTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	721, 1265
BsoBI	CYCGRG	2 cut(s)	107, 654
Bsp119I	TTCGAA	1 cut(s)	853
Bsp120I	GGGCCC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	234, 667
Bsp13I	TCCGGA	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	150, 316, 1176
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp19I	CCATGG	1 cut(s)	485
Bsp68I	TCGCGA	1 cut(s)	266
BspACI	CCGC	5 cut(s)	228, 257, 260, 303, 398
BspCNI	CTCAG	2 cut(s)	472, 979
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	3 cut(s)	257, 266, 712
BspLI	GGNNCC	4 cut(s)	232, 318, 787, 1253
BspPI	GGATC	3 cut(s)	311, 324, 1171
BspT104I	TTCGAA	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	475, 526
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	4 cut(s)	198, 288, 485, 540
BssMI	GATC	3 cut(s)	150, 316, 1176
BssT1I	CCWWGG	3 cut(s)	288, 485, 540
Bst2UI	CCWGG	4 cut(s)	271, 516, 596, 845
Bst4CI	ACNGT	2 cut(s)	65, 1240
Bst6I	CTCTTC	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	5 cut(s)	24, 45, 230, 327, 420
BstDEI	CTNAG	5 cut(s)	147, 414, 459, 973, 987
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	615, 668, 1033
BstFNI	CGCG	3 cut(s)	257, 266, 712
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	2 cut(s)	192, 413
BstKTI	GATC	3 cut(s)	153, 319, 1179
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	3 cut(s)	150, 316, 1176
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	6 cut(s)	234, 263, 331, 419, 424, 557
BstNI	CCWGG	4 cut(s)	271, 516, 596, 845
BstSCI	CCNGG	9 cut(s)	192, 232, 237, 269, 336, 514, 594, 843, 1120
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	2 cut(s)	234, 667
BstUI	CGCG	3 cut(s)	257, 266, 712
BstV1I	GCAGC	2 cut(s)	827, 1166
BstV2I	GAAGAC	2 cut(s)	63, 862
BstX2I	RGATCY	2 cut(s)	316, 1176
BstYI	RGATCY	2 cut(s)	316, 1176
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	615, 668, 1033
BtsIMutI	CAGTG	1 cut(s)	70
BtuMI	TCGCGA	1 cut(s)	266
Cac8I	GCNNGC	5 cut(s)	24, 45, 230, 327, 420
CfoI	GCGC	2 cut(s)	192, 413
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	9 cut(s)	195, 210, 230, 231, 236, 273, 509, 1109, 1252
CseI	GACGC	2 cut(s)	263, 718
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	6 cut(s)	34, 94, 112, 133, 1046, 1217
CviAII	CATG	6 cut(s)	53, 97, 486, 1066, 1141, 1265
CviQI	GTAC	6 cut(s)	34, 94, 112, 133, 1046, 1217
DdeI	CTNAG	5 cut(s)	147, 414, 459, 973, 987
DpnI	GATC	3 cut(s)	152, 318, 1178
DpnII	GATC	3 cut(s)	150, 316, 1176
DrdI	GACNNNNNNGTC	2 cut(s)	260, 1259
DseDI	GACNNNNNNGTC	2 cut(s)	260, 1259
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
Eco130I	CCWWGG	3 cut(s)	288, 485, 540
Eco147I	AGGCCT	2 cut(s)	83, 1234
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	509, 1109, 1252
Eco47III	AGCGCT	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	573, 576
Eco88I	CYCGRG	2 cut(s)	107, 654
EcoO109I	RGGNCCY	1 cut(s)	1252
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	4 cut(s)	269, 514, 594, 843
EcoT14I	CCWWGG	3 cut(s)	288, 485, 540
EcoT22I	ATGCAT	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	3 cut(s)	288, 485, 540
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	6 cut(s)	56, 100, 489, 1069, 1144, 1268
FalI	AAGNNNNNCTT	4 cut(s)	518, 550, 1239, 1271
FaqI	GGGAC	2 cut(s)	721, 1265
FatI	CATG	6 cut(s)	52, 96, 485, 1065, 1140, 1264
FauI	CCCGC	2 cut(s)	221, 391
Fnu4HI	GCNGC	4 cut(s)	258, 304, 816, 1155
FokI	GGATG	3 cut(s)	622, 655, 1040
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	258, 304, 816, 1155
FspBI	CTAG	4 cut(s)	629, 741, 1166, 1224
GlaI	GCGC	2 cut(s)	191, 412
GluI	GCNGC	4 cut(s)	258, 304, 816, 1155
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	414
HapII	CCGG	7 cut(s)	193, 234, 239, 320, 337, 446, 1121
HgaI	GACGC	2 cut(s)	263, 718
HhaI	GCGC	2 cut(s)	192, 413
Hin1II	CATG	6 cut(s)	56, 100, 489, 1069, 1144, 1268
Hin6I	GCGC	2 cut(s)	190, 411
HinP1I	GCGC	2 cut(s)	190, 411
HindIII	AAGCTT	2 cut(s)	735, 970
HinfI	GANTC	4 cut(s)	205, 563, 695, 747
HpaII	CCGG	7 cut(s)	193, 234, 239, 320, 337, 446, 1121
HphI	GGTGA	3 cut(s)	169, 626, 1129
Hpy166II	GTNNAC	3 cut(s)	925, 1109, 1275
Hpy188I	TCNGA	3 cut(s)	592, 1006, 1087
Hpy8I	GTNNAC	3 cut(s)	925, 1109, 1275
Hpy99I	CGWCG	3 cut(s)	227, 257, 311
HpyAV	CCTTC	5 cut(s)	293, 713, 896, 1190, 1289
HpyCH4III	ACNGT	2 cut(s)	65, 1240
HpyCH4IV	ACGT	2 cut(s)	36, 859
HpyCH4V	TGCA	8 cut(s)	427, 551, 769, 775, 815, 836, 896, 1144
HpyF10VI	GCNNNNNNNGC	6 cut(s)	234, 263, 331, 419, 424, 557
HpyF3I	CTNAG	5 cut(s)	147, 414, 459, 973, 987
HpySE526I	ACGT	2 cut(s)	36, 859
Hsp92II	CATG	6 cut(s)	56, 100, 489, 1069, 1144, 1268
HspAI	GCGC	2 cut(s)	190, 411
Kpn2I	TCCGGA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	150, 316, 1176
LmnI	GCTCC	2 cut(s)	322, 339
Lsp1109I	GCAGC	2 cut(s)	827, 1166
LweI	GCATC	3 cut(s)	762, 883, 1051
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	4 cut(s)	629, 741, 1166, 1224
MaeII	ACGT	2 cut(s)	36, 859
MalI	GATC	3 cut(s)	152, 318, 1178
MboI	GATC	3 cut(s)	150, 316, 1176
MboII	GAAGA	5 cut(s)	68, 151, 579, 670, 867
MflI	RGATCY	2 cut(s)	316, 1176
MhlI	GDGCHC	2 cut(s)	234, 667
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	5 cut(s)	10, 173, 349, 1081, 1283
MluI	ACGCGT	1 cut(s)	710
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	838
MroI	TCCGGA	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	539
MspI	CCGG	7 cut(s)	193, 234, 239, 320, 337, 446, 1121
MspR9I	CCNGG	9 cut(s)	194, 234, 239, 271, 338, 516, 596, 845, 1122
MvaI	CCWGG	4 cut(s)	271, 516, 596, 845
MvnI	CGCG	3 cut(s)	257, 266, 712
MwoI	GCNNNNNNNGC	6 cut(s)	234, 263, 331, 419, 424, 557
NciI	CCSGG	5 cut(s)	194, 234, 239, 338, 1122
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	3 cut(s)	150, 316, 1176
NlaIII	CATG	6 cut(s)	56, 100, 489, 1069, 1144, 1268
NlaIV	GGNNCC	4 cut(s)	232, 318, 787, 1253
NmeAIII	GCCGAG	1 cut(s)	223
NruI	TCGCGA	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	838
NspV	TTCGAA	1 cut(s)	853
PaeR7I	CTCGAG	2 cut(s)	107, 654
PceI	AGGCCT	2 cut(s)	83, 1234
PfeI	GAWTC	3 cut(s)	205, 695, 747
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	259, 305, 817, 1156
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	1252
PsiI	TTATAA	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	1252
Psp6I	CCWGG	4 cut(s)	269, 514, 594, 843
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	4 cut(s)	269, 514, 594, 843
PspN4I	GGNNCC	4 cut(s)	232, 318, 787, 1253
PspOMI	GGGCCC	1 cut(s)	230
PspPI	GGNCC	9 cut(s)	195, 210, 230, 231, 236, 273, 509, 1109, 1252
PspPPI	RGGWCCY	1 cut(s)	1252
PsuI	RGATCY	2 cut(s)	316, 1176
RruI	TCGCGA	1 cut(s)	266
RsaI	GTAC	6 cut(s)	35, 95, 113, 134, 1047, 1218
RsaNI	GTAC	6 cut(s)	34, 94, 112, 133, 1046, 1217
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	258, 304, 816, 1155
Sau3AI	GATC	3 cut(s)	150, 316, 1176
Sau96I	GGNCC	9 cut(s)	195, 210, 230, 231, 236, 273, 509, 1109, 1252
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	9 cut(s)	194, 234, 239, 271, 338, 516, 596, 845, 1122
SduI	GDGCHC	2 cut(s)	234, 667
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	3 cut(s)	762, 883, 1051
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	2 cut(s)	107, 654
SfuI	TTCGAA	1 cut(s)	853
SinI	GGWCC	3 cut(s)	509, 1109, 1252
SlaI	CTCGAG	2 cut(s)	107, 654
SmlI	CTYRAG	5 cut(s)	107, 128, 404, 654, 1158
SmoI	CTYRAG	5 cut(s)	107, 128, 404, 654, 1158
Sse9I	AATT	5 cut(s)	10, 173, 349, 1081, 1283
SseBI	AGGCCT	2 cut(s)	83, 1234
SsiI	CCGC	5 cut(s)	228, 257, 260, 303, 398
SspMI	CTAG	4 cut(s)	629, 741, 1166, 1224
StuI	AGGCCT	2 cut(s)	83, 1234
StyD4I	CCNGG	9 cut(s)	192, 232, 237, 269, 336, 514, 594, 843, 1120
StyI	CCWWGG	3 cut(s)	288, 485, 540
TaaI	ACNGT	2 cut(s)	65, 1240
TaiI	ACGT	2 cut(s)	39, 862
TaqI	TCGA	4 cut(s)	108, 655, 853, 904
TasI	AATT	5 cut(s)	10, 173, 349, 1081, 1283
TatI	WGTACW	2 cut(s)	93, 111
TauI	GCSGC	2 cut(s)	260, 306
TfiI	GAWTC	3 cut(s)	205, 695, 747
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	815, 1154
TspDTI	ATGAA	5 cut(s)	69, 113, 702, 1087, 1281
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	3 cut(s)	509, 1109, 1252
XapI	RAATTY	3 cut(s)	173, 1081, 1283
XbaI	TCTAGA	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XhoI	CTCGAG	2 cut(s)	107, 654
XspI	CTAG	4 cut(s)	629, 741, 1166, 1224
ZrmI	AGTACT	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.